KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:48:04 2014 Check: 00 .. Name: BACU019132/1-338 Len: 358 Check: 6132 Weight: 1.00 Name: ENSP00000408025/1-338 Len: 358 Check: 6088 Weight: 1.00 Name: ENSBTAP00000012835/1-338 Len: 358 Check: 5230 Weight: 1.00 Name: bmy_11437T0/1-297 Len: 358 Check: 3108 Weight: 1.00 Name: ENSTTRP00000005853/1-276 Len: 358 Check: 5186 Weight: 1.00 // 1 50 BACU019132/1-338 MTDQAAFDTN IVTLTRFVME EGRKARGTGE MTQLLNSLCT AVKAISTAVR ENSP00000408025/1-338 MADQAPFDTD VNTLTRFVME EGRKARGTGE LTQLLNSLCT AVKAISSAVR ENSBTAP00000012835/1-338 MTDQAAFDTN IVTVTRFVME EGRKARGTGE MTQLLNSLCT AVKAISTAVR bmy_11437T0/1-297 MTDQAAFDTN IVTLTRFVME EGRKARGTGE MTQLLNSLCT AVKAISTAVR ENSTTRP00000005853/1-276 ---------- ---------- ---------- ---------- ---------- 51 100 BACU019132/1-338 KAGIAHLYGI AGSTNVTGDQ VKKLDVLSND LVINVLKSSF ATCVLVSEED ENSP00000408025/1-338 KAGIAHLYGI AGSTNVTGDQ VKKLDVLSND LVMNMLKSSF ATCVLVSEED ENSBTAP00000012835/1-338 KAGIAHLYGI AGTTNVTGDQ VKKLDVLSND LVVNVLKSSF ATCVLVSEED bmy_11437T0/1-297 KAGIAHLYGI AGSTNVTGDQ VKKLDVLSND LVINVLKSSF ATCVLVSEED ENSTTRP00000005853/1-276 -------YGI AGSTNMTGDQ VKKLDVLSND LVINVLKSSF ATCVLVSEED 101 150 BACU019132/1-338 KHAIIVEPEK RGKYVVCFDP LDGSSNIDCL VSIGTIFGIY RKISTGDPSE ENSP00000408025/1-338 KHAIIVEPEK RGKYVVCFDP LDGSSNIDCL VSVGTIFGIY RKKSTDEPSE ENSBTAP00000012835/1-338 EHAIIVEPEK RGKYVVCFDP LDGSSNIDCL VSIGTIFGIY KKISKDDPSE bmy_11437T0/1-297 KHAIIVEPEK R--------- ---------- ---------- --ISTDDPSE ENSTTRP00000005853/1-276 KHAIIVEPEK RGKYVVCFDP LDGSSNIDCL VSIGTIFGIY RKISTDDPSE 151 200 BACU019132/1-338 KDALQPGRNL VAAGYALYGS ATMLVLAMAN GVNCFMLDPV RDPRGSWVLR ENSP00000408025/1-338 KDALQPGRNL VAAGYALYGS ATMLVLAMDC GVNCFMLDPA ---IGEFILV ENSBTAP00000012835/1-338 KDALQPGRNL VAAGYALYGS ATMLVLAMAN GVNCFMLDPA ---IGEFILV bmy_11437T0/1-297 KDALQPGRNL VAAGYALYGS ATMLVLAMAN GVNCFMLDPA ---IGEFILV ENSTTRP00000005853/1-276 KDALQPGRNL VAAGYALYGS ATMLVLATAN GVNGFMLDPA ---IGEFILV 201 250 BACU019132/1-338 WWLIGKAPSK THTESLIRSS FRAIKRRETS VLPKY--HSV LSP------- ENSP00000408025/1-338 -----DKDVK IKKKGKIYSL NEGYARDFDP AVTEYIQRKK FPP------- ENSBTAP00000012835/1-338 -----DRDVK IKKKGSIYSL NEGYAKDFDP ALTEYVQRKK FPP------- bmy_11437T0/1-297 -----DRDVK IKKKGSIYSL NEGYTKDFHP AVAEYVQRKK LPPVSEGCGV ENSTTRP00000005853/1-276 -----DRDVK IKKKGSIYSL NEGYTKDFDP AVAEYVQRKK FPP------- 251 300 BACU019132/1-338 GVNLISYFDH YFAMKQISFL CNLFWSENAA LVF------- ----QLRLLY ENSP00000408025/1-338 -DNSAPYGAR YVG----SMV ADVHRTLVYG GIFLYPANKK SPNGKLRLLY ENSBTAP00000012835/1-338 -DNSAPYGAR YVG----SMV ADVHRTLVYG GIFMYPANKK SPSGKLRLLY bmy_11437T0/1-297 RDNSAPYGAR YVG----SMV ADVHRTL--- ---------- -----LRLLY ENSTTRP00000005853/1-276 -DNSAPYGAR YVG----SMV ADVHRTLVYG GIFLYPANR- ----KLRLLY 301 350 BACU019132/1-338 ECNPMAYVIE KAGGLATTGK EAVLDIVPTD IHQRAPIILG SPEDVTEFLE ENSP00000408025/1-338 ECNPMAYVME KAGGMATTGK EAVLDVIPTD IHQRAPVILG SPDDVLEFLK ENSBTAP00000012835/1-338 ECNPMAYVIE KAGGMATTGK ETVLDIVPTD IHQKSPIILG SPEDVTEFLE bmy_11437T0/1-297 ECNPMAYVIE KAGGLATTGK EAVLDIVPTD IHQRAPIILG SPEDVTEFLE ENSTTRP00000005853/1-276 ECNPMAYVME KAGGLATTGK EAVLDIVPTD IHQRAPIILG SPEDVTEFLE 351 400 BACU019132/1-338 LYKKHAAK ENSP00000408025/1-338 VYEKHSAQ ENSBTAP00000012835/1-338 IYKKHAAK bmy_11437T0/1-297 LYKKHAAK ENSTTRP00000005853/1-276 LYKKHAAK