KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:48:08 2014 Check: 00 .. Name: ENSBTAP00000012847/1-1217 Len: 1280 Check: 7175 Weight: 1.00 Name: ENSP00000324587/1-1265 Len: 1280 Check: 2971 Weight: 1.00 Name: ENSTTRP00000011218/1-1156 Len: 1280 Check: 4804 Weight: 1.00 Name: bmy_05457T0/1-1077 Len: 1280 Check: 8446 Weight: 1.00 Name: BACU004131/1-1211 Len: 1280 Check: 7375 Weight: 1.00 // 1 50 ENSBTAP00000012847/1-1217 MKVRLLRQLS AASRVKPPSG LQGPPQAHQF ISLLLEEYGA LCQAARTISS ENSP00000324587/1-1265 MKVRLLRQLS AAAKVKAPSG LQGPPQAHQF ISLLLEEYGA LCQAARSIST ENSTTRP00000011218/1-1156 ---------- ---------- ---------- ---------- ---------- bmy_05457T0/1-1077 ---------- ---------- ---------- ---------- ---------- BACU004131/1-1211 MKVRLLRQLS AASRVKSPSA LQGPPQAHQF ISLLLEEYGA LCQAARTIST 51 100 ENSBTAP00000012847/1-1217 FLGTLENEHL KKFQVTWELH NKHLFEDLVF SEPLLQSNLP ALVSQIRLGT ENSP00000324587/1-1265 FLGTLENEHL KKFQVTWELH NKHLFENLVF SEPLLQSNLP ALVSQIRLGT ENSTTRP00000011218/1-1156 -----ENEHL KKFQVTWELH NKHLFEDLVF SEPLLQSSLP ALVSQIRLGT bmy_05457T0/1-1077 ---------- ---------- ---------- ---------- ---------- BACU004131/1-1211 FLGTLENEHL KKFQVTWELH NKHLFEDLVF SEPLLQSSLP ALVSQIRLGT 101 150 ENSBTAP00000012847/1-1217 TTHDGCCEDT YSALLQRFQR SEEELRAVAA EWLQCQKRID AYVDEQMTMK ENSP00000324587/1-1265 TTHDTCSEDT YSTLLQRYQR SEEELRRVAE EWLECQKRID AYVDEQMTMK ENSTTRP00000011218/1-1156 TTHDTCNEDT YSTLLQRYQR SEEELRGVAE EWLECQKRID AYVDEQMTMK bmy_05457T0/1-1077 ---------- ---------- ---------- ---------- ------MTMK BACU004131/1-1211 TTHDTCNEDT YSTLLQRYQR SEEELRGVAE EWLECQKRID AYVDEQMTMK 151 200 ENSBTAP00000012847/1-1217 TKQRMLTEDW ELFKQRRFIE EQFTKKKAVA GENSFTDTMR HVLSSRLSVP ENSP00000324587/1-1265 TKQRMLTEDW ELFKQRRFIE EQLTNKKAVT GENNFTDTMR HMLSSRLSMP ENSTTRP00000011218/1-1156 TKQRMLTEDW ELFKQRRF-- EELTNKKAVA GENSFTDTMR HVLSSRLSMP bmy_05457T0/1-1077 TKQRMLTEDW ELFKQRRFVE EQLTNKKAVT GENSFTDTMR HVLSSRLSMP BACU004131/1-1211 TKQRMLTEDW ELFKQRRFVE EQLTNKKAVT GENSFTDTMR HVLSSRLSMP 201 250 ENSBTAP00000012847/1-1217 DCPNCNYRRR CACDDCSLSH ILTCGIMDPP VTGDIHIHQL PLPVDAAPDC ENSP00000324587/1-1265 DCPNCNYRRR CACDDCSLSH ILTCGIMDPP VTDDIHIHQL PLQVDPAPDY ENSTTRP00000011218/1-1156 DCPNCNYRRR CACDDCSLSH ILTCGIMDPP VTGDIHIHQL PLQVDSAPDY bmy_05457T0/1-1077 DCPNCNYRRR CACDDCSLSH ILTCGIMDAP VTGDIHVHQL PLQVDSAPDC BACU004131/1-1211 DCPNCNYRRR CACDDCSLSH ILTCGIMDPP VAGDIHIHQL PLQVDSAPDC 251 300 ENSBTAP00000012847/1-1217 LSEIRPPGVS SASSGSASSS PITVQQHPRL ILTDNGSAPT FCSDDEDVAP ENSP00000324587/1-1265 LAERSPPSVS SASSGSGSSS PITIQQHPRL ILTDSGSAPT FCSDDEDVAP ENSTTRP00000011218/1-1156 LSEMRPPSVS SASSGSGSSS PITVQQHPRL ILTDNGSAPT FCSDDEDVAP bmy_05457T0/1-1077 LSEMRPPSAS SASSGSGSSS PITVQQHPRL ILTDNGSAPT FCSDDEDVAP BACU004131/1-1211 LSEMRPPSVS SASSGSGSSS PITVQQHPRL ILTDNGSAPT FCSDDEDVAP 301 350 ENSBTAP00000012847/1-1217 LSAKFADIYP LSNYEDAEVV ASMNGVHGEL NGGGENLALK DE-------- ENSP00000324587/1-1265 LSAKFADIYP LSNYDDTEVV ANMNGIHSEL NGGGENMALK DE-------- ENSTTRP00000011218/1-1156 LSAKFADIYP LSNYDDAEVV ASMNGIHGEL NGGGENMALK DE-------- bmy_05457T0/1-1077 LSAKFADIYP LSNYDDAEVV ASMNGIHGEL NGGGENMALK DECKLQGLFL BACU004131/1-1211 LSAKFADIYP LSNYDDAEVV ASMNGIHGEL NGGGENMALK DE-------- 351 400 ENSBTAP00000012847/1-1217 -SPQVSSTSS SSSEADDEEA DGESSGEPPG APKEDTALGS GSPRKEESKV ENSP00000324587/1-1265 -SPQISSTSS SSSEADDEEA DGESSGEPPG APKEDGVLGS RSPRTEESKA ENSTTRP00000011218/1-1156 -SPQVSSTSS SSSEADDEEA DGESSGEPPG APKEDTALGD GSPGKEESKV bmy_05457T0/1-1077 KSPQVSSTSS SSSEADDEEA DGESSGEPPG APKEDTALGN GSPGKEESKV BACU004131/1-1211 ----VSSTSS SSSEVDDEEA DGESSGEPPG APKEDTALGN GSPGKEESKV 401 450 ENSBTAP00000012847/1-1217 DSPPPSYPAQ QAEQAPNTCE CHVCKQEASG LTPSAMAAGA LPPGHQFLSP ENSP00000324587/1-1265 DSPPPSYPTQ QAEQAPNTCE CHVCKQEASG LTPSAMTAGA LPPGHQFLSP ENSTTRP00000011218/1-1156 DSPPPSYSTQ QAEQAPNTCE CHVCKQEASG LTPSAVTAGA LPPGHQFLIP bmy_05457T0/1-1077 DSPPPSYSTQ QAEQAPNTCE CHVCKQEASG LTPSAVTAGA LPPGHQFLSP BACU004131/1-1211 DSPPPSYSTQ QAEQAPNTCE CHVCKQEASG LTPSAVTAGA LPPGHQFLSP 451 500 ENSBTAP00000012847/1-1217 EKPAHPALHL YPHIHGHVPL HAVPHLPRPL IHPTLYTAPP FTHSKALPPA ENSP00000324587/1-1265 EKPTHPALHL YPHIHGHVPL HTVPHLPRPL IHPTLYATPP FTHSKALPPA ENSTTRP00000011218/1-1156 EKPTHPALHL YPHIHGHVPL HAVPHLPRPL IHPTLYTAPP FTHSKALPPA bmy_05457T0/1-1077 EKPTHPALHL YPHIHGHVPL HAVPHLPRPL IHPTLYTAPP FTHSKALPPA BACU004131/1-1211 EKPTHPALHL YPHIHGHVPL HAVPHLPRPL IHPTLYTAPP FTHSKALPPA 501 550 ENSBTAP00000012847/1-1217 PVQNHTNKHQ VFSASLQDHI YPSCFGSTPE WTSSKFISLW GSEVMNDKNW ENSP00000324587/1-1265 PVQNHTNKHQ VFNASLQDHI YPSCFGNTPE WNSSKFISLW GSEVMNDKNW ENSTTRP00000011218/1-1156 PVQNHTNKHQ VFNASLQDHI YPSCFGNTPE WNSSKFISLW GSEVMNDKNW bmy_05457T0/1-1077 PVQNHTNKHQ VFNASLQDHI YPSCFGNTPE WNSSKFISLW GSEVMNDKNW BACU004131/1-1211 PVQNHTNKHQ VFNASLQDHI YPSCFGNTPE WNSSKFISLW GSEVMNDKNW 551 600 ENSBTAP00000012847/1-1217 NPGTYLPDTI SGSDLLGPTL SEARPEAPPP PSGSETAAVS DNKEKKGAAK ENSP00000324587/1-1265 NPGTFLPDTI SGSEILGPTL SETRPEALPP PSSNETPAVS DSKEKKNAAK ENSTTRP00000011218/1-1156 NPGTFLPDTI SGNDILGPTL SETRPEALPP PSSNETPAVP DSKEKKNAAK bmy_05457T0/1-1077 NPGTFLPDTI SGNDILGPTL SETRPEALPP PSSNETPAVP DSKEKKNAAK BACU004131/1-1211 NPGTFLPDTI SGNDILGPTL SETRPEALPP PSSNETPAVP DSKEKKNAAK 601 650 ENSBTAP00000012847/1-1217 KKCLYNFQDA FMEANKVVMA TSSATSSVSC TATTVQSSSS QFRVSSRRPP ENSP00000324587/1-1265 KKCLYNFQDA FMEANKVVMA TSSATSSVSC TATTVQSSNS QFRVSSKRPP ENSTTRP00000011218/1-1156 KKCLYNFQDA FMEANKVVMA TSSATSSVSC TATTVQSSNS QFRVSSKRPP bmy_05457T0/1-1077 KKCLYNFQDA FMEANKVVMA TSSATSSVSC TATTVQSSNS QFRVSSKRPP BACU004131/1-1211 KKCLYNFQDA FMEANKVVMA TSSATSSVSC TATTVQSSNS QFRVSSKRPP 651 700 ENSBTAP00000012847/1-1217 SLGDVFHGIN KEDHRHGVPA APRSSPTGLA PLP-----AL APAALSAAST ENSP00000324587/1-1265 SVGDVFHGIS KEDHRHSAPA APRNSPTGLA PLPALSPAAL SPAALSPAST ENSTTRP00000011218/1-1156 SLGDVFHGIN KEDHRHGVPA APRNSPTGLV PLP-----AL PPAALSPASA bmy_05457T0/1-1077 SLGDVFHGXN KEDHRHGVPA APRNSPTGLV PLP-----AL PPAALSPASA BACU004131/1-1211 SLGDVFHGIN KEDHRHGVPA APRNSPTGLV PLP-----AL PPAALSPASA 701 750 ENSBTAP00000012847/1-1217 PHLANIAAVS FPKTAA-SPG FVESLKSFCP APVAPPPPTT DGSVSAPPSV ENSP00000324587/1-1265 PHLANLAAPS FPKTATTTPG FVDTRKSFCP APL---PPAT DGSISAPPSV ENSTTRP00000011218/1-1156 PHLASLAAPS FPKTAATSPG FADSRKSFCP APV---APTT DGSVSAPPSV bmy_05457T0/1-1077 PHLASLAAPS FPKTAATSPG FADSRKSFCP APV---APTT DGSVSAPPSV BACU004131/1-1211 PHLAGLAAPS FPKTAATSPG FADSRKSFCP APV---APTT DGSVSAPPSV 751 800 ENSBTAP00000012847/1-1217 CSDPDCEGHR CENGVYDPQQ DDGDESADED SCSEHSSSTS TSTNQKEGKY ENSP00000324587/1-1265 CSDPDCEGHR CENGVYDPQQ DDGDESADED SCSEHSSSTS TSTNQKEGKY ENSTTRP00000011218/1-1156 CSDPDCEGHR CESGVYDLQQ DDGDETAVED SCSEHSSSTS TSTNQKEGKY bmy_05457T0/1-1077 CSDPDCEGHR CENGVYDPQQ DDGDETADED SCSEHSSSTS TSTNQKEGKY BACU004131/1-1211 CSDPDCEGHR CENGVYDPQQ DDGDETADED SCSEHSSSTS TSTNQKEGKY 801 850 ENSBTAP00000012847/1-1217 CDCCYCEFFG HGGPPAAPTS RNYAEMREKL RLRLTKRKEE QPKKADQLSE ENSP00000324587/1-1265 CDCCYCEFFG HGGPPAAPTS RNYAEMREKL RLRLTKRKEE QPKKMDQISE ENSTTRP00000011218/1-1156 CDCCYCEFFG HGGPPAAPTS RNYAEMREKL RLRLTKRKEE QPKKTDQLSE bmy_05457T0/1-1077 CDCCYCEFFG HGGPPAAPTS RNYAEMREKL RLRLTKRKEE QPKKTDQLSE BACU004131/1-1211 CDCCYCEFFG HGGPPAAPTS RNYAEMREKL RLRLTKRKEE QPKKTDQLSE 851 900 ENSBTAP00000012847/1-1217 RESVVDHRRV EDLLQFINSS ETKPVSSTRA AKRARHKQRK LEEKARLEAE ENSP00000324587/1-1265 RESVVDHRRV EDLLQFINSS ETKPVSSTRA AKRARHKQRK LEEKARLEAE ENSTTRP00000011218/1-1156 RESVVDHRRV EDLLQFINSS ETKPVSSTRA AKRARHKQRK LEEKARLEAE bmy_05457T0/1-1077 RESVVDHRRV EDLLQFINSS ETKPVSSTRA AKRARHKQRK LEEKARLEAE BACU004131/1-1211 RESVVDHRRV EDLLQFINSS ETKPVSSTRA AKRARHKQRK LEEKARLEAE 901 950 ENSBTAP00000012847/1-1217 ARARGHLHLR EEQRRR---- ---ADDERLT EELQRLQELQ TLRAVKKKKK ENSP00000324587/1-1265 ARAREHLHLQ EEQRRREEEE DEEEEEDRFK EEFQRLQELQ KLRAVKKKKK ENSTTRP00000011218/1-1156 ARAREHLHLR AEERRR---- --EEEQQRLQ EELQRLQELQ KLRAVKKKKK bmy_05457T0/1-1077 ARAREHLHLR EEERRR---- -EEEEEERLK EELQRLQELQ KLRAVKKKKK BACU004131/1-1211 ARAREHLHLR EEERRR---- -EEEEEERLK EELQRLQELQ KLRAVKKKKK 951 1000 ENSBTAP00000012847/1-1217 ERLGKDCPKL DMLASSFQAA AESAPGAETI HNGSLEPTED PETSSPCPSR ENSP00000324587/1-1265 ERPSKDCPKL DMLTRNFQAA TESVPNSGNI HNGSLEQTEE PETSSHSPSR ENSTTRP00000011218/1-1156 ERPRKACPEL DMLARSLQAA AEAVPGSESM HNGSLEPSED PETSSRSPSR bmy_05457T0/1-1077 ERPSKDCPKL DMLARSFQAA TESAPNSDNI HNGSLEPTED PETSSRSPSR BACU004131/1-1211 ERPSKDCPKL DMLARSFQAA TESAPNSDNI HNGSLEPTED PETSSRSPSR 1001 1050 ENSBTAP00000012847/1-1217 HADHAGPGPG ADPSRHADPT EPVDAREAKR LLPKGISGEQ PEPLSFLLDM ENSP00000324587/1-1265 HMNHSEPRPG --LGADGDAA DPVDTRDSKF LLPKEVNGKQ HEPLSFFFDI ENSTTRP00000011218/1-1156 HVDHRDTGPG --PGADADTP DPVAARDSKL LLPKGVNGKQ QQPLSFLLDM bmy_05457T0/1-1077 HMDHRETGPG --PGADGDTT EAAASRDSKL LLAKGVNGKQ QEPLSFLLDM BACU004131/1-1211 HMDHRETGPG --PGADGDTT EPAAARDSKL LLPKGVNGKQ QEPLSFLLDM 1051 1100 ENSBTAP00000012847/1-1217 VHHHKGGAGP QKPRPGSKAA GEPARKPGES PRAPEGPARP RPQAEPKARV ENSP00000324587/1-1265 MQHHKEGNGK QKLRQTSKAS SEPARRPTEP PKATEGQSKP RAQTESKAKV ENSTTRP00000011218/1-1156 MHQHKEGNSK QKLKHSSKAG GEPARKPLEP PRASEAQPRP RPQAESKARV bmy_05457T0/1-1077 MHHHKEGSSK QKLKQTSKAG SEPARKPLEP PRASEAQPRP RPQAESKARV BACU004131/1-1211 MHHHKEGSSK QKLKQTSKAG SEPARKPLEP PRASEAQPRP RPQAESKARV 1101 1150 ENSBTAP00000012847/1-1217 LELPPLVGHR REETKANSNN SNRKQLNHVR EEKPGPGPTE PPVPSEPLQS ENSP00000324587/1-1265 VDLMSITEQK REERKVNSNN NNKKQLNHIK DEKSNPTPME PTSPGEHQQN ENSTTRP00000011218/1-1156 LDLTPLAEHR REERKVNSNN NNRKQLNHVR EEKPSPGPAE PAAPSEHPQS bmy_05457T0/1-1077 LDLTPLADHR REERKVNSNN NNRKQLNHVR EEKPSPGPAE PAASSEHPQG BACU004131/1-1211 LDLTPLAEHR REERKVNSNN NNRKQLNHVR EEKPSPGPAE PAAPSEHPQG 1151 1200 ENSBTAP00000012847/1-1217 GKPATAESPQ PKGRGRKSKK KKGERASSSI ---------- ---------- ENSP00000324587/1-1265 SKLVLAESPQ PKGKNKKNKK KKGDRVNNSI DGVSLLLPSL GYNGAILAHC ENSTTRP00000011218/1-1156 GKPAPADSPQ PKGKSKKSKK KKGDRGSGSI ---------- ---------- bmy_05457T0/1-1077 GKPAPADSPQ PKGKSKKSKK KKGDRGSSSI ---------- ---------- BACU004131/1-1211 GKPAPADSPQ PKGKSKKSKK KKGDRGSSSI ---------- ---------- 1201 1250 ENSBTAP00000012847/1-1217 ---------- ---------- -DDVFLPKDI DLDSVDMDET EREVEYFKRF ENSP00000324587/1-1265 NLRLPGSSDC AASASQVVGI TDDVFLPKDI DLDSVDMDET EREVEYFKRF ENSTTRP00000011218/1-1156 ---------- ---------- -DDVFLPKDI DLDSVDMDET EREVEYFKRF bmy_05457T0/1-1077 ---------- ---------- -DDVFLPKDI DLDSVDMDET EREVEYFKRF BACU004131/1-1211 ---------- ---------- -DDVFLPKDI DLDSVDMDET EREVEYFKRF 1251 1300 ENSBTAP00000012847/1-1217 CLFELRQQYF NYFFQKTHTY TQKRSSFQCH ENSP00000324587/1-1265 CLDSARQTRQ RLSINWSN-F SLKKATFAAH ENSTTRP00000011218/1-1156 CLDSARQTRQ RLSINWSN-F SLKKATFAAH bmy_05457T0/1-1077 CLDSARQTRQ RLSINWSN-F SLKKATFAAH BACU004131/1-1211 CLDSARQTRQ RLSINWSN-F SLKKATFAAH