KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:48:13 2014 Check: 00 .. Name: ENSP00000308610/1-727 Len: 728 Check: 5061 Weight: 1.00 Name: ENSBTAP00000012886/1-727 Len: 728 Check: 918 Weight: 1.00 Name: ENSTTRP00000005422/1-727 Len: 728 Check: 7602 Weight: 1.00 Name: bmy_03763T0/1-534 Len: 728 Check: 1739 Weight: 1.00 Name: BACU010050/1-424 Len: 728 Check: 1737 Weight: 1.00 // 1 50 ENSP00000308610/1-727 MAFQKAVKGT ILVGGGALAT VLGLSQFAHY RRKQMNLAYV KAADCISEPV ENSBTAP00000012886/1-727 MAFQKAVKGT ILVGGGALAT VLGLSHFAHY KRKQVNLAFV EAADCISEPV ENSTTRP00000005422/1-727 MAFQKAVKGT ILVGGGALAT VLGLSQFAHY KRKQVNLAFV EAADYVSEPV bmy_03763T0/1-534 ---------- ---------- ---------- ---------- ---------- BACU010050/1-424 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000308610/1-727 NREPPSREAQ LLTLQNTSEF DILVIGGGAT GSGCALDAVT RGLKTALVER ENSBTAP00000012886/1-727 NREPPSREAQ ILTLKNTSEF DVLVIGGGAT GSGCALDAVT RGLKTALVER ENSTTRP00000005422/1-727 NREPPSREAQ ILTLKNTSEF DVLVIGGGAT GSGCALDAVT RGLKTALVER bmy_03763T0/1-534 ---------- ---------- ---------- ---------- ---------- BACU010050/1-424 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000308610/1-727 DDFSSGTSSR STKLIHGGVR YLQKAIMKLD IEQYRMVKEA LHERANLLEI ENSBTAP00000012886/1-727 DDFSSGTSSR STKLIHGGVR YLQKAIMKLD IEQYRMVKEA LHERANLLEI ENSTTRP00000005422/1-727 DDFSSGTSSR STKLIHGGVR YLQKAIMKLD IEQXXXXXXX XXXXXXXXXX bmy_03763T0/1-534 ---------- ---------- ---------- ---------- ---------- BACU010050/1-424 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000308610/1-727 APHLSAPLPI MLPVYKWWQL PYYWVGIKLY DLVAGSNCLK SSYVLSKSRA ENSBTAP00000012886/1-727 APHLSAPLPI MLPIYKWWQL PYYWVGIKLY DLVAGSNCLK SSYVLSKSRA ENSTTRP00000005422/1-727 XXXXXXXXXX XXXXXXWWQL PYYWVGIKLY DLVAGSNCLK SSYVLSKSRA bmy_03763T0/1-534 ---------- --MSDILLAV RSLWLEVTPV PPLMLSPA-- ---------- BACU010050/1-424 ---------- -------MQI K--------- ---------- ---------- 201 250 ENSP00000308610/1-727 LEHFPMLQKD KLVGAIVYYD GQHNDARMNL AIALTAARYG AATANYMEVV ENSBTAP00000012886/1-727 LEHFPMLQKD KLVGAIVYYD GQHNDARMNL AIALTAARYG AATANYMEVM ENSTTRP00000005422/1-727 LEHFPMLQKD KLVGAIVYYD GQHNDARMNL AIALTAARYG AATANYMEVM bmy_03763T0/1-534 ---------- ---------A GQHNDARMNL AIALTAARYG AATANYMEVV BACU010050/1-424 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000308610/1-727 SLLKKTDPQT GKVRVSGARC KDVLTGQEFD VRAKCVINAT GPFTDSVRKM ENSBTAP00000012886/1-727 SLLKKTDPQT GKERVSGARC KDVLTGEEFD VRAKCVINAT GPFTDTVRKM ENSTTRP00000005422/1-727 SLLKKTDPKT GKERVSGARC KDVLTGEEFD VRAKCVINAT GPFTDTVRKM bmy_03763T0/1-534 SLLKKTDPQT GKERVSGARC KDVLTGEEFD VRAKCVINAT GPFTDIVRRM BACU010050/1-424 ---------- ---------S KLQLISEIYD ---------- ---------- 301 350 ENSP00000308610/1-727 DDKDAAAICQ PSAGVHIVMP GYY-SPESMG LLDPATSDGR VIFFLPWQKM ENSBTAP00000012886/1-727 DDKDTTAICQ PSAGVHIVMP GYY-SPESMG LLDPATSDGR VIFFLPWQKM ENSTTRP00000005422/1-727 DDKDAAAICQ PSAGVHIVMP GYY-SPESMG LLDPATSDGR VIFFLPWQKM bmy_03763T0/1-534 DDKDAAAICQ PSAGVHIVMP GYY-SPESMG LLDPATSDGR VIFFLPWQKM BACU010050/1-424 ---------- ---------P SFYPSPESMG LLDPATSDGR VIFFLPWQKM 351 400 ENSP00000308610/1-727 TIAGTTDTPT DVTHHPIPSE EDINFILNEV RNYLSCDVEV RRGDVLAAWS ENSBTAP00000012886/1-727 TIAGTTDTPT DVTHHPIPSE EDINFILNEV RNYLSCDVEV RRGDVLAAWS ENSTTRP00000005422/1-727 TIAGTTDTPT DVTHHPIPSE EDINFILNEV RNYLSCDVEV RRGDVLAAWS bmy_03763T0/1-534 TIAGTTDTPT DITHHPIPSE EDINFILNEV RNYLSCDVEV RRGDVLAAWS BACU010050/1-424 TIAGTTDTPT DVTHHPIPSE EDINFILNEV RNYLSCDVEV RRGDVLAAWS 401 450 ENSP00000308610/1-727 GIRPLVTDPK SADTQSISRN HVVDISESGL ITIAGGKWTT YRSMAEDTIN ENSBTAP00000012886/1-727 GIRPLVTDPK SADTKSISRN HVVDISESGL ITIAGGKWTT YRSMAEDTIN ENSTTRP00000005422/1-727 GIRPLVTDPK SADTQSISRN HVVDISESGL ITIAGGKWTT YRSMAEDTIN bmy_03763T0/1-534 GIRPLVTDPK SADTQSISRN HVVDISESGL ITIAGGKWTT YRSMAEDTIN BACU010050/1-424 GIRPLVTDPK SADTQSISRN HVVDISESGL ITIAGGKWTT YRSMAEDTVN 451 500 ENSP00000308610/1-727 AAVKTHNLKA GPSRTVGLFL QGGKDWSPTL YIRLVQDYGL ESEVAQHLAA ENSBTAP00000012886/1-727 AAVKAHNLKA GPSRTVGLFL QGGKDWSPTL YIRLVQDYGL ESEVAQHLAA ENSTTRP00000005422/1-727 AAVKTHNLKA GPSKTVGLFL QGGKDWSPTL YIRLVQDYGL ESEVAQHLAA bmy_03763T0/1-534 AAVKTHNLKA GPSKTVGLFL QGGKDWSPTL YIRLVQDYGL ESEVAQHLAA BACU010050/1-424 AAVKTHNLKA GPSKTVGLFL QGGKDWSPTL YIRLVQDYGL ESEVAQHLAA 501 550 ENSP00000308610/1-727 TYGDKAFEVA KMASVTGKRW PIVGVRLVSE FPYIEAEVKY GIKEYACTAV ENSBTAP00000012886/1-727 TYGDKAFEVA KMASVTGKRW PIVGVRLVSE FPYIEAEVKY GIKEYACTAV ENSTTRP00000005422/1-727 TYGDKAFEVA KMASVTGKRW PIVGVRLVSE FPYIEAEVKY GIKEYACTAV bmy_03763T0/1-534 TYGDKAFEVA KMASVTGKRW PIVGVRLVSE FPYIEAEVKY GIKEYACTAV BACU010050/1-424 TYGDKAFEVA KMASVTGKRW PIVGVRLVSE FPYIEAEVKY GIKEYACTAV 551 600 ENSP00000308610/1-727 DMISRRTRLA FLNVQAAEEA LPRIVELMGR ELNWDDYKKQ EQLETARKFL ENSBTAP00000012886/1-727 DMISRRTRLA FLNVQAAEEA LPRIVELMGR ELNWDDSKKE EELETARKFL ENSTTRP00000005422/1-727 DMISRRTRLA FLNVQAAEEA LPRIVELMGR ELSWGDSKKK EELETARKFL bmy_03763T0/1-534 DMISRRTRLA FLNVQAAEEA LPRIVELMGR ELSWGDSKKK EELETAKKFL BACU010050/1-424 DMISRRTRLA FLNVQAAEEA LPRIVELMGR ELSWGDSKKK EELETAKKFL 601 650 ENSP00000308610/1-727 YYEMGYKSRS EQLTDRSEIS LLPSDIDRYK KRFHKFDADQ KGFITIVDVQ ENSBTAP00000012886/1-727 YYEMGYKSRS EQLTDRSEIS LLPSDIDRYK KRFHKFDADQ KGFITIVDVQ ENSTTRP00000005422/1-727 YYEMGYKSRS EQLTDHSEIS LLPSDIDRYK KRFHKFDADQ KGFITIVDVQ bmy_03763T0/1-534 YYEMGYKSRS EQLTDHSEIS LLPSDIDRYK KRFHKFDADQ KGFITTVDVQ BACU010050/1-424 YYEMGYKSRS EQLTDHSEIS LLPSDIDRYK KRFHKFDADQ KGFITTVDVQ 651 700 ENSP00000308610/1-727 RVLESINVQM DENTLHEILN EVDLNKNGQV ELNEFLQLMS AIQKGRVSGS ENSBTAP00000012886/1-727 RVLESIGVQM DENTLHEILN EVDLNKNGQV ELNEFLQLMS AIQKGRVSGS ENSTTRP00000005422/1-727 RVLESISVQM DENTLHEILN EVDLNKNGQV ELNEFLQLMS AVQKGRVSGS bmy_03763T0/1-534 RVLESISVQM DENTLHEILN EVDLNKNGQV ELNEFLQLMS AVQKGRVSGS BACU010050/1-424 RVLESISVQM DENTLHEILN EVDLNKNGQV ELNEFLQLMS AVQKGRVSGS 701 750 ENSP00000308610/1-727 RLAILMKTAE ENLDRRVPIP VDRSCGGL ENSBTAP00000012886/1-727 RLAILMKTAE ENLDRRVPIP VDRSCGGL ENSTTRP00000005422/1-727 RLAILMKTAE ENLDRRVPIP VDRSCGGL bmy_03763T0/1-534 RLAILMKTAE ENLDRRVPIP VDRSCGGL BACU010050/1-424 RLAILMKTAE ENLDRRVPIP VDRSCGGL