KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:48:14 2014  Check: 00 ..

 Name: ENSP00000359378/1-231     Len:    260  Check:  9719  Weight:  1.00
 Name: bmy_06464T0/1-252         Len:    260  Check:  3691  Weight:  1.00
 Name: ENSBTAP00000012893/1-231  Len:    260  Check:  9220  Weight:  1.00
 Name: ENSTTRP00000015835/1-231  Len:    260  Check:  8472  Weight:  1.00

//


                          1                                                   50
ENSP00000359378/1-231     ---------- ---------- ---------M AVFLEAKDAH SVLKRFPRAN 
bmy_06464T0/1-252         MAVAPLCLGW VWSTGASGPL PIPGLSVTLS SVFLEAKNAH SVLKRFPRAN 
ENSBTAP00000012893/1-231  ---------- ---------- ---------M AVFLEAKNAH SILKRFPRAN 
ENSTTRP00000015835/1-231  ---------- ---------- ---------M AVFLEAKNAH SVLKRFPRAN 


                          51                                                 100
ENSP00000359378/1-231     EFLEELRQGT IERECMEEIC SYEEVKEVFE NKEKTMEFWK GYPNAVYSVR 
bmy_06464T0/1-252         EFLEELRQGT IERECMEEIC SYEEVKE--- -----MEFWK GYPNAVYSVR 
ENSBTAP00000012893/1-231  EFLEELRQGT IERECMEEVC SYEEVKEVFE DKEKTMEFWK GYPNAVYSVR 
ENSTTRP00000015835/1-231  EFLEELRQGT IERECMEEIC SYEEVKEVFE DKEKTMEFWK GYPNAVYSVR 


                          101                                                150
ENSP00000359378/1-231     DPSQSSDAMY VVVPLLGVAL LIVIALFIIW RCQLQKATRH HPSYAQNRYL 
bmy_06464T0/1-252         DPAQSSDAMY VVVPLLGVAL LIVIALFIIW RCQLQKATRH HPSYAQNRYL 
ENSBTAP00000012893/1-231  DPAQSSDAMY VVVPLLGVAL LIVIALFIIW RCQLQKATRH HPSYAQNRYL 
ENSTTRP00000015835/1-231  DPAQSSDAMY VVVPLLGVAL LIVIALFIIW RCQLQKATRH HPSYAQNRYL 


                          151                                                200
ENSP00000359378/1-231     ASRAGHTLPR VMVYRGTVHS QGEPSGHREA ANSPQVVLGP SRGGRTTVRL 
bmy_06464T0/1-252         ASRAGHSLPR VMVYRGTVHS QGETSGHRET GSPPQVVLGP SRGGRTTVRL 
ENSBTAP00000012893/1-231  ASRAGHSLPR VMVYRGTVHS QGEASGHRET GSHPQVVLGP SRGGRTTVRL 
ENSTTRP00000015835/1-231  ASRAGHSLPR VMVYRGTVHS QGEASGHREA GSPPQVVLGP SRGGRTTVRL 


                          201                                                250
ENSP00000359378/1-231     ESTLYLPELS LSRLSSTTPP PSYEEVTAPQ ESSSEEASVS YSDPPPKYEE 
bmy_06464T0/1-252         ESALYLPELS LSRLSSATPP PSYEEVTGPQ ESSGEEASVS YSDPPPKYEE 
ENSBTAP00000012893/1-231  ESTLYLPELS LSRLSSATPP PSYEEVTAPQ ESSSEEASVS YSDPPPKYEE 
ENSTTRP00000015835/1-231  ESTLYLPELS LSRLSSATPP PSYEEVTAPQ ESSSEEASVS YSDPPPKYEE 


                          251                                                300
ENSP00000359378/1-231     IVAANPGADK 
bmy_06464T0/1-252         IVAANPDSDK 
ENSBTAP00000012893/1-231  IVAANPGSDK 
ENSTTRP00000015835/1-231  IVAANPDSDK