KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:48:15 2014 Check: 00 .. Name: ENSTTRP00000013704/1-999 Len: 1395 Check: 4383 Weight: 1.00 Name: ENSBTAP00000012904/1-978 Len: 1395 Check: 2173 Weight: 1.00 Name: ENSP00000322542/1-998 Len: 1395 Check: 4392 Weight: 1.00 Name: bmy_00387T0/1-787 Len: 1395 Check: 8725 Weight: 1.00 Name: BACU012006/1-1354 Len: 1395 Check: 4038 Weight: 1.00 // 1 50 ENSTTRP00000013704/1-999 MAQVAMSTLP VEDEESSESR MVVTFLMSAL ESMCKELAKS KAEXXXXXXX ENSBTAP00000012904/1-978 MAQVAVSTLP VEDEESSESR MVVTFLMSAL ESMCKELAKS KAEVACIAVY ENSP00000322542/1-998 MAQVAMSTLP VEDEESSESR MVVTFLMSAL ESMCKELAKS KAEVACIAVY bmy_00387T0/1-787 MAQVAMSTLP VEDEESSESR MVVTFLMSAL ESMCKELAKS KAEVACIAVY BACU012006/1-1354 MAQVAMSTLP VEDEESSESR MVVTFLMSAL ESMCKELAKS KAEVACIAVY 51 100 ENSTTRP00000013704/1-999 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000012904/1-978 ETDVFVVGTE RGRAFVNTRK DFQKDFVKYC VEEEEKAAEM HKMKSTAQAN ENSP00000322542/1-998 ETDVFVVGTE RGRAFVNTRK DFQKDFVKYC VEEEEKAAEM HKMKSTTQAN bmy_00387T0/1-787 ETDVFVVGTE RGRAFVNTRK DFQKDFVKYC VEEEEKAAEM HKMKSTTQAN BACU012006/1-1354 ETDVFVVGTE RGRAFVNTRK DFQKDFVKYC VEEEEKAAEM HKMKSTTQAN 101 150 ENSTTRP00000013704/1-999 XXXXXXXXXX XXXXXXXXXX XXXXXKALGK STVVPVPYEK MLRDQSAVVV ENSBTAP00000012904/1-978 RMSVDAVEIE TLRKTVEDYF CFCYGKALGK STVVPVPYEK MLRDQSAVVV ENSP00000322542/1-998 RMSVDAVEIE TLRKTVEDYF CFCYGKALGK STVVPVPYEK MLRDQSAVVV bmy_00387T0/1-787 RMNVDAVEIE TLRKTVEDYF CFCYGKALGK STVVPVPYEK MLRDQSAVVV BACU012006/1-1354 RMNVDAVEIE TLRKTVEDYF CFCYGKALGK STVVPVPYEK MLRDQSAVVV 151 200 ENSTTRP00000013704/1-999 QGLPEGVSFK HPENYDLATL KWILENKAGI SFIIKRPFLE PKKLLGARVT ENSBTAP00000012904/1-978 QGLPEGVAFK HPENYDLATL KWILENKAGI SFIIKRPFLE PKKHLGGRVM ENSP00000322542/1-998 QGLPEGVAFK HPENYDLATL KWILENKAGI SFIIKRPFLE PKKHVGGRVM bmy_00387T0/1-787 QGLPEGVSFK HPENYDLATL KWILENKAGI SFIIKRPFLE PKKLLGGRVT BACU012006/1-1354 QGLPEGVSFK HPENYDLATL KWILENKAGI SFIIKRPFLE PKKLLGGRVT 201 250 ENSTTRP00000013704/1-999 VTDAERSMLS PGGSCGPIKV KTEPTEDSGI SLEMAAVTVK EESEDPDYYQ ENSBTAP00000012904/1-978 VTDAERSMIS PSGSCGPVKV KTEPSEDSGI SLEMAAVTVK EESEDPDYYQ ENSP00000322542/1-998 VTDADRSILS PGGSCGPIKV KTEPTEDSGI SLEMAAVTVK EESEDPDYYQ bmy_00387T0/1-787 VTDAERSMLS PGGSCGSIKV KTEPTEDSGI SLEMAAVTVK EESEDPDYYQ BACU012006/1-1354 VTDAERSMLS PGGSCGSIKV KTEPTEDSGI SLEMAAVTVK EESEDPDYYQ 251 300 ENSTTRP00000013704/1-999 YNIQAGPSET DDVDDKLPLS KSLQXXXXXX XXXXXXXXXX XXXXSTQHVP ENSBTAP00000012904/1-978 YNIQAGPSET DDVDDKLPLS KSLQGSHHSS EGNEGTEMEV PA-------- ENSP00000322542/1-998 YNIQAGPSET DDVDEKQPLS KPLQGSHHSS EGNEGTEMEV PAEDSTQHVP bmy_00387T0/1-787 YNI------- ---------- ---QGSHHSS EGNEGTEMEV PAEDSTQHVP BACU012006/1-1354 YNI------- ---------- ---QGSHHSS EGTEGTEMEV PA-------- 301 350 ENSTTRP00000013704/1-999 SETSEDPEVE VTIEDDDYSP PTKRPKSNEP PQPPVTEPAN AGKRKVREFN ENSBTAP00000012904/1-978 ---------- ---EDDDYPP PAKRPKSSEP PQPPVTEPAN AGKRKVREFN ENSP00000322542/1-998 SETSEDPEVE VTIEDDDYSP PSKRPKANEL PQPPVPEPAN AGKRKVREFN bmy_00387T0/1-787 SETSEDPEVE VTIEDDDYSP PTKRPKSNEP PQPPVTEPAN AGKRKVREFN BACU012006/1-1354 ---------- ---EDDDYSP PTKRPKSNEP PQPPVTEPAN AGKRKVREFN 351 400 ENSTTRP00000013704/1-999 FEKWNARITD LRKQVEELFE RKYAQAIKAK GPVTIPYPLF QSHVEDLYVE ENSBTAP00000012904/1-978 FEKWNARITD LRKQVEELFE RKYAQAIKAK GPVTIPYPLF QSHVEDLYVE ENSP00000322542/1-998 FEKWNARITD LRKQVEELFE RKYAQAIKAK GPVTIPYPLF QSHVEDLYVE bmy_00387T0/1-787 FEKWNARITD LRKQVEELFE RKYAQAIKAK GPVTIPYPLF QSHVEDLYVE BACU012006/1-1354 FEKWNARITD LRKQVEELFE RKYAQAIKAK GPVTIPYPLF QSHVEDLYVE 401 450 ENSTTRP00000013704/1-999 GLPEGIPFRR PSTYGIPRLE RILLAKERIR FVIKKHELLN STREDLQLDK ENSBTAP00000012904/1-978 GLPEGIPFRR PSTYGIPRLE RILLAKERIR FVIKKHELLN STREDLQLDK ENSP00000322542/1-998 GLPEGIPFRR PSTYGIPRLE RILLAKERIR FVIKKHELLN STREDLQLDK bmy_00387T0/1-787 GLPEGIPFRR PSTYGIPRLE RILLAKERIR FVIKKHELLN STREDLQLDK BACU012006/1-1354 GLPEGIPFRR PSTYGIPRLE RILLAKERIR FVIKKHELLN STREDLQLDK 451 500 ENSTTRP00000013704/1-999 PASGVKEEWY ARITKLRKMV DQLFCKKFAE ALGSTEAKAV PYQKFEAHPH ENSBTAP00000012904/1-978 PASGVKEEWY ARITKLRKMV DQLFCKKFAE ALGSTEAKAV PYQKFEAHPN ENSP00000322542/1-998 PASGVKEEWY ARITKLRKMV DQLFCKKFAE ALGSTEAKAV PYQKFEAHPN bmy_00387T0/1-787 PASGVKEEWY ARITKLRKMV DQLFCKKFAE ALGSTEAKAV PYQKFEAHPN BACU012006/1-1354 PASGVKEEWY ARITKLRKMV DQLFCKKFAE ALGSTEAKAV PYQKFEAHPN 501 550 ENSTTRP00000013704/1-999 DLYVEGLPEN IPFRSPSWYG IPRLEKIIQV GNRIKFVIKR PELLTHSTTE ENSBTAP00000012904/1-978 DLYVEGLPEN IPFRSPSWYG IPRLEKIIQV GNRIKFVIKR PELLTHSTTE ENSP00000322542/1-998 DLYVEGLPEN IPFRSPSWYG IPRLEKIIQV GNRIKFVIKR PELLTHSTTE bmy_00387T0/1-787 DLYVEGLPEN IPFRSPSWYG IPRLEKIIQV GNRIKFVIKR PELLTHSTTE BACU012006/1-1354 DLYVEGLPEN IPFRSPSWYG IPRLEKIIQV GNRIKFVIKR PELLTHSTTE 551 600 ENSTTRP00000013704/1-999 VTQPRTNTPX XXXXXXXXXX XXXXXXXXXX XXXXQALGLT EAVKVPYPVF ENSBTAP00000012904/1-978 VTQPRTNTPV KEDWNVRITK LRKQVEEIFN LKFAQALGLT EAVKVPYPVF ENSP00000322542/1-998 VTQPRTNTPV KEDWNVRITK LRKQVEEIFN LKFAQALGLT EAVKVPYPVF bmy_00387T0/1-787 VTQPRTNTPV KEDWNVRITK LRKQVEEIFN LKFAQALGLT EAVKVPYPVF BACU012006/1-1354 VTQPRTNTPV KEDWNVRITK LRKQVEEIFN LKFAQALGLT EAVKVPYPVF 601 650 ENSTTRP00000013704/1-999 ESNPEFLYVE GLPEGIPFRS PTWFGIPRLE RIVRGSNKIK FVVKKPELVI ENSBTAP00000012904/1-978 ESNPEFLYVE GLPEGIPFRS PTWFGIPRLE RIVRGSNKIK FVVKKPELVI ENSP00000322542/1-998 ESNPEFLYVE GLPEGIPFRS PTWFGIPRLE RIVRGSNKIK FVVKKPELVI bmy_00387T0/1-787 ESNPEFLYVE GLPEGIPFRS PTWFGIPRLE RIVRGSNKIK FVVKKPELVI BACU012006/1-1354 ESNPEFLYVE GLPEGIPFRS PTWFGIPRLE RIVRGSNKIK FVVKKPELVI 651 700 ENSTTRP00000013704/1-999 SYLPPGMASK INTKALQSPK RPRSPGSNSK VPEIEVTVEG PNNSNPQTSA ENSBTAP00000012904/1-978 SYLPPGMASK INTKALQSPK RPRSPGSNSK VPEIEVTVEG PNNSNPQTSA ENSP00000322542/1-998 SYLPPGMASK INTKALQSPK RPRSPGSNSK VPEIEVTVEG PNNNNPQTSA bmy_00387T0/1-787 SYLPPGMASK INTKALQSPK RPRSPGSNSK VPEIEVTVEG PNNSNPQTSA BACU012006/1-1354 SYLPPGMASK INTKALQSPK RPRSPGSNSK VPEIEVTVEG PNNSNPQTSA 701 750 ENSTTRP00000013704/1-999 VRTPTQTNGS NVPFKPRGRE FSFEAWNAKI TDLKQKVENL FNEKCGEALG ENSBTAP00000012904/1-978 VRTPTQTNGS NVPFKPRGRE FSFEAWNAKI TDLKQKVENL FNEKCGEALG ENSP00000322542/1-998 VRTPTQTNGS NVPFKPRGRE FSFEAWNAKI TDLKQKVENL FNEKCGEALG bmy_00387T0/1-787 VRTPTQTNGS NVPFKPRGRE FSFEAWNAKI TDLKQKVENL FNEKCGEALG BACU012006/1-1354 VRTPTQTNGS NVPFKPRGRE FSFEAWNAKI TDLKQKVENL FNEKCGEALG 751 800 ENSTTRP00000013704/1-999 LKQAVKVPFA LFESFPEDFY VEGLPEGVPF RRPSTFGIPR LEKILRNKAK ENSBTAP00000012904/1-978 LKQAVKVPFA LFESFPEDFY VEGLPEGVPF RRPSTFGIPR LEKILRNKAK ENSP00000322542/1-998 LKQAVKVPFA LFESFPEDFY VEGLPEGVPF RRPSTFGIPR LEKILRNKAK bmy_00387T0/1-787 LKQAVKVPFA LFESFPEDFY VEGLPEGVPF RRPSTFGIPR LEKILRNKAK BACU012006/1-1354 LKQAVKVPFA LFESFPEDFY VEGLPEGVPF RRPSTFGIPR LEKILRNKAK 801 850 ENSTTRP00000013704/1-999 IKFIIKKPEM FETAIKESTS SSKSPPRKIN SSPNVNTTAS GVEDLNIIQV ENSBTAP00000012904/1-978 IKFIIKKPEM FETAIKESTS SSKSPPRKIN SSPSVNTTAS GVEDLNIIQV ENSP00000322542/1-998 IKFIIKKPEM FETAIKEST- SSKSPPRKIN SSPNVNTTAS GVEDLNIIQV bmy_00387T0/1-787 IKFIIKK--- ---------- ---------- ---------- ---------- BACU012006/1-1354 IKFIIKKPEM FETAIKESTS SSKSPPRKIN SSPNVNTTAS GVEDLNIIQV 851 900 ENSTTRP00000013704/1-999 TIPDDDNERL SKVEKARQLR EQVNDLFSRK FGEAIGMGFP VKVPYRKITI ENSBTAP00000012904/1-978 TIPDDDNERL SKVEKARQLR EQVNDLFSRK FGEAIGMGFP VKVPYRKITI ENSP00000322542/1-998 TIPDDDNERL SKVEKARQLR EQVNDLFSRK FGEAIGMGFP VKVPYRKITI bmy_00387T0/1-787 ---------- ---------- ---------- ---------- ---------- BACU012006/1-1354 TIPDDDNERL SKVEKARQLR EQVNDLFSRK FGEAIGMGFP VKVPYRKITI 901 950 ENSTTRP00000013704/1-999 NPGCVVVDGM PPGVSFKAPS YLEISSMRRI LDSAEFIKFT VIR------- ENSBTAP00000012904/1-978 NPGCVVVDGM PPGVSFKAPS YLEISSMRRI LDSAEFIKFT VIR------- ENSP00000322542/1-998 NPGCVVVDGM PPGVSFKAPS YLEISSMRRI LDSAEFIKFT VIR------- bmy_00387T0/1-787 ---------- ---------- ---------- ---------- ---------- BACU012006/1-1354 NPGCVVVDGM PPGVSFKAPS YLEISSMRRI LDSAEFIKFT VIRNRKGPLE 951 1000 ENSTTRP00000013704/1-999 ---------- ---PFPGLVI NNQLVDQSES ESPVIQESAE PSQLEVPATE ENSBTAP00000012904/1-978 ---------- ---PFPGLVI NNQLVDQNES EGPVIQESAE PTQLEVPATE ENSP00000322542/1-998 ---------- ---PFPGLVI NNQLVDQSES EGPVIQESAE PSQLEVPATE bmy_00387T0/1-787 ---------- ---------- ---------- ---------- ---------- BACU012006/1-1354 REIERPDLSS FHTPSPSLNK LKILVGLTIS GQVTTKSILP PTPSPVGFHH 1001 1050 ENSTTRP00000013704/1-999 EIKETDG--- ---------- ---------- ---------- ---------- ENSBTAP00000012904/1-978 EIKETDG--- ---------- ---------- ---------- ---------- ENSP00000322542/1-998 EIKETDG--- ---------- ---------- ---------- ---------- bmy_00387T0/1-787 ---------- ---------- ---------- ---------- ---------- BACU012006/1-1354 GVGGCPGVWL NEMPHLYRPQ VYMFLVKWQD LSEKVVYRRF TEIYEFHKIL 1051 1100 ENSTTRP00000013704/1-999 ---------- ----SSQIKQ EPDPTW---- ---------- ---------- ENSBTAP00000012904/1-978 ---------- ----NSQIKQ EPDPTW---- ---------- ---------- ENSP00000322542/1-998 ---------- ----SSQIKQ EPDPTW---- ---------- ---------- bmy_00387T0/1-787 ---------- ---------- ---------- ---------- ---------- BACU012006/1-1354 KEMFPIEAGD ITPENRIIPH LPAPRWFDGQ RVAESRQGTL TEYCNSLMNL 1101 1150 ENSTTRP00000013704/1-999 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012904/1-978 ---------- ---------- ---------- ---------- ---------- ENSP00000322542/1-998 ---------- ---------- ---------- ---------- ---------- bmy_00387T0/1-787 ---------- ---------- ---------- ---------- ---------- BACU012006/1-1354 PGKISRCPHL LNFFKVRPDD LKLPTDSQGL LCSGPCVDSI GDADEILREC 1151 1200 ENSTTRP00000013704/1-999 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012904/1-978 ---------- ---------- ---------- ---------- ---------- ENSP00000322542/1-998 ---------- ---------- ---------- ---------- ---------- bmy_00387T0/1-787 ---------- ---------- ---------- ---------- ---------- BACU012006/1-1354 AAEDITGPII LQTYRAIADY EKSSGSEMAL ATGDVVDVVE KSQSGWWFCQ 1201 1250 ENSTTRP00000013704/1-999 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012904/1-978 ---------- ---------- ---------- ---------- ---------- ENSP00000322542/1-998 ---------- ---------- ---------- ---------- ---------- bmy_00387T0/1-787 ---------- ---------- ---------- ---------- ---------- BACU012006/1-1354 MKTKRGWVPA SYLEPLDSPD EAEDPEPNYA GEPYVTIKAY TALLEDEMSL 1251 1300 ENSTTRP00000013704/1-999 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012904/1-978 ---------- ---------- ---------- ---------- ---------- ENSP00000322542/1-998 ---------- ---------- ---------- ---------- ---------- bmy_00387T0/1-787 ---------- ---------- ---------- ---------- ---------- BACU012006/1-1354 EQGETIEVIH KLLDGWWVIR KEDVTGYFPS MYLQQAGQDT DQVQSRIKRG 1301 1350 ENSTTRP00000013704/1-999 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012904/1-978 ---------- ---------- ---------- ---------- ---------- ENSP00000322542/1-998 ---------- ---------- ---------- ---------- ---------- bmy_00387T0/1-787 ---------- ---------- ---------- ---------- ---------- BACU012006/1-1354 APPRRSSIRN AHSIHQQSRK RLSQDTYRRN SVRFLQQGRR RAPPGPQSPR 1351 1400 ENSTTRP00000013704/1-999 ---------- ---------- ---------- ---------- ----- ENSBTAP00000012904/1-978 ---------- ---------- ---------- ---------- ----- ENSP00000322542/1-998 ---------- ---------- ---------- ---------- ----- bmy_00387T0/1-787 ---------- ---------- ---------- ---------- ----- BACU012006/1-1354 SPLKEEEPPK TERPKPQPAV PPRPSADLIL HRCSESTKRK LASSV