KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:48:18 2014 Check: 00 .. Name: BACU000358/1-554 Len: 607 Check: 1859 Weight: 1.00 Name: ENSP00000361540/1-499 Len: 607 Check: 3079 Weight: 1.00 Name: ENSBTAP00000012945/1-499 Len: 607 Check: 1504 Weight: 1.00 Name: bmy_16619T0/1-529 Len: 607 Check: 5561 Weight: 1.00 Name: ENSTTRP00000010251/1-499 Len: 607 Check: 1984 Weight: 1.00 // 1 50 BACU000358/1-554 ---------- ---------- ---------- ---------- ---------- ENSP00000361540/1-499 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012945/1-499 ---------- ---------- ---------- ---------- ---------- bmy_16619T0/1-529 PRPRVLGWEG LRPGVPGWEG LRPGWPCVVG RPRARSPFFL RGSAGSPLPP ENSTTRP00000010251/1-499 ---------- ---------- ---------- ---------- ---------- 51 100 BACU000358/1-554 ---MAQFVFE SDLHSLLQLD TPIPNAPPAR WQRKAKEALD RPPRLSGQPT ENSP00000361540/1-499 ---MAQFAFE SDLHSLLQLD APIPNAPPAR WQRKAKEAAG PAP----SPM ENSBTAP00000012945/1-499 ---MAQFVFE SDLHSLLQLD TPIPNAPPAR WQRKAKEAAG PAP----SPM bmy_16619T0/1-529 DTPMAQFVFE SDLHSLLQLD TPIPNAPPAR WQRKAKEAAG PAP----SPM ENSTTRP00000010251/1-499 ---MAQFVFE SDLHSLLQLD TPIPNAPPAR WQRKAKEAAG PAP----SPM 101 150 BACU000358/1-554 DPTAPGGPRG RTPGKSSSKI QTTPSKPGGD RYIPRCCASQ MEVASSLPPG ENSP00000361540/1-499 RAANRSHSAG RTPGRT---- ---------- ---------- --------PG ENSBTAP00000012945/1-499 RAANRSHSAG RTPGRT---- ---------- ---------- --------PG bmy_16619T0/1-529 RAANRSHSAG RTPGRT---- ---------- ---------- --------PG ENSTTRP00000010251/1-499 RAANRSHSAG RTPGRT---- ---------- ---------- --------PG 151 200 BACU000358/1-554 GQPTDPTAPA GPRAELPVSK SSSKIQTTPS KPGGDRYIPH RSASQMEVAS ENSP00000361540/1-499 ---------- ---------K SSSKVQTTPS KPGGDRYIPH RSAAQMEVAS ENSBTAP00000012945/1-499 ---------- ---------K SSSKLQTTPS KPGGDRYIPH RNASQMEVAS bmy_16619T0/1-529 ---------- ---------K SSSKIQTTPS KPGGDRYIPH RSASQMEVAS ENSTTRP00000010251/1-499 ---------- ---------K SSSKNQTTPS KPGGDRYIPH RSASQMEVAS 201 250 BACU000358/1-554 FLLSKENQPE DSQTPTKKEH QKAWALNLNG FDVEEAKILR LSGKPQNAPE ENSP00000361540/1-499 FLLSKENQPE NSQTPTKKEH QKAWALNLNG FDVEEAKILR LSGKPQNAPE ENSBTAP00000012945/1-499 FLLSKENQPD NSETPTKKEH QKAWALNLNG FDMEEAKILR LSGKPQNAPE bmy_16619T0/1-529 FLLSKENQPE DSQTPTKKEH QKAWALNLNG FDVEEAKILR LSGKPQNAPE ENSTTRP00000010251/1-499 FLLSKENQPE DSQTPTKKEH QKAWALNLNG FDVEEAKILR LSGKPQNAPE 251 300 BACU000358/1-554 GYQNRLKVLY SQKATPSSSR KTCRYIPSLP DRILDAPEIR NDYYLNLVDW ENSP00000361540/1-499 GYQNRLKVLY SQKATPGSSR KTCRYIPSLP DRILDAPEIR NDYYLNLVDW ENSBTAP00000012945/1-499 GYQNRLKVLY SQKATPGSSR KTCRYIPSLP DRILDAPEIR NDYYLNLVDW bmy_16619T0/1-529 GYQNRLKVLY SQKATPSSSR KTCRYIPSLP DRILDAPEIR NDYYLNLVDW ENSTTRP00000010251/1-499 GYQNRLKVLY SQKATPSSSR KTCRYIPSLP DRILDAPEIR NDYYLNLVDW 301 350 BACU000358/1-554 SSGNVLAVAL DNSVYLWSAS SGDILQLLQL EQPGDYISSV AWIKEGNYLA ENSP00000361540/1-499 SSGNVLAVAL DNSVYLWSAS SGDILQLLQM EQPGEYISSV AWIKEGNYLA ENSBTAP00000012945/1-499 SSGNVLAVAL DNSVYLWSAS TGDILQLLQM EQPGDYISSV AWIKEGNYLA bmy_16619T0/1-529 SSGNVLAVAL DNSVYLWSAS SGDILQLLQL EQPGDYISSV AWIKEGNYLA ENSTTRP00000010251/1-499 SSGNVLAVAL DNSVYLWSAS SGDILQLLQL EQPGDYISSV AWIKEGNYLA 351 400 BACU000358/1-554 VGTSSAEVQL WDVQQQKRLR NMTSHSARVG SLCWNSYILS SGSRSGHIHH ENSP00000361540/1-499 VGTSSAEVQL WDVQQQKRLR NMTSHSARVG SLSWNSYILS SGSRSGHIHH ENSBTAP00000012945/1-499 VGTSSAEVQL WDVQQQKRLR NMTSHSARVG SLCWNSYILS SGSRSGHIHH bmy_16619T0/1-529 VGTSSAEVQL WDVQQQKRLR NMTSHSARVG SLCWNSYILS SGSRSGHIHH ENSTTRP00000010251/1-499 VGTSSAEVQL WDVQQQKRLR NMTSHSARVG SLCWNSYILS SGSRSGHIHH 401 450 BACU000358/1-554 HDVRVAEHHV ATLSGHSQEV CGLRWAPDGR HLASGGNDNL VNVWPSAPGE ENSP00000361540/1-499 HDVRVAEHHV ATLSGHSQEV CGLRWAPDGR HLASGGNDNL VNVWPSAPGE ENSBTAP00000012945/1-499 HDVRVAEHHV ATLSGHSQEV CGLRWAPDGR HLASGGNDNL VNVWPSAPGE bmy_16619T0/1-529 HDVRVAEHHV ATLSGHSQEV CGLRWAPDGR HLASGGNDNL VNVWPSAPGE ENSTTRP00000010251/1-499 HDVRVAEHHV ATLSGHSQEV CGLRWAPDGR HLASGGNDNL VNVWPSAPGE 451 500 BACU000358/1-554 GGWVPLQTFT QHQGAVKAVA WCPWQPNVLA TGGGTSDRHI RIWNVCSGAC ENSP00000361540/1-499 GGWVPLQTFT QHQGAVKAVA WCPWQSNVLA TGGGTSDRHI RIWNVCSGAC ENSBTAP00000012945/1-499 GGWVPLQTFT QHQGAVKAVA WCPWQSNVLA TGGGTSDRHI RIWNVCSGAC bmy_16619T0/1-529 GGWVPLQTFT QHQGAVKAVA WCPWQPNVLA TGGGTSDRHI RIWNVCSGAC ENSTTRP00000010251/1-499 GGWVPLQTFT QHQGAVKAVA WCPWQPNVLA TGGGTSDRHI RIWNVCSGAC 501 550 BACU000358/1-554 LSAVDAHSQV CSILWSPHYK ELISGHGFAQ NQLVIWKYPT MAKVAELKGH ENSP00000361540/1-499 LSAVDAHSQV CSILWSPHYK ELISGHGFAQ NQLVIWKYPT MAKVAELKGH ENSBTAP00000012945/1-499 LSAVDAHSQV CSILWSPHYK ELISGHGFAQ NQLVIWKYPT MAKVAELKGH bmy_16619T0/1-529 LSA------V CSILWSPHYK ELISGHGFAQ NQLVIWKYPT MAKVAELK-- ENSTTRP00000010251/1-499 LSAVDAHSQV CSILWSPHYK ELISGHGFAQ NQLVIWKYPT MAKVAELKGH 551 600 BACU000358/1-554 TARVLSLTMS PDGATVASAA ADETLRLWRC FELDPARRRE REKASAAKSS ENSP00000361540/1-499 TSRVLSLTMS PDGATVASAA ADETLRLWRC FELDPARRRE REKASAAKSS ENSBTAP00000012945/1-499 TARVLSLTMS PDGATVASAA ADETLRLWRC FELDPARRRE REKASAAKSS bmy_16619T0/1-529 ---------- -----VASAA ADETLRLWRC FELDPARRRE REKASAAKSS ENSTTRP00000010251/1-499 TARVLSLTMS PDGATVASAA ADETLRLWRC FELDAARRRE REKASAAKSS 601 650 BACU000358/1-554 LIHQGIR ENSP00000361540/1-499 LIHQGIR ENSBTAP00000012945/1-499 LIHQGIR bmy_16619T0/1-529 LIHQGIR ENSTTRP00000010251/1-499 LIHQGIR