KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:48:19 2014 Check: 00 .. Name: ENSP00000383402/1-950 Len: 957 Check: 3708 Weight: 1.00 Name: ENSBTAP00000012949/1-925 Len: 957 Check: 2905 Weight: 1.00 Name: ENSTTRP00000013569/1-921 Len: 957 Check: 7425 Weight: 1.00 Name: bmy_14054T0/1-484 Len: 957 Check: 7748 Weight: 1.00 Name: BACU017058/1-890 Len: 957 Check: 6764 Weight: 1.00 // 1 50 ENSP00000383402/1-950 MADLSLLQED LQEDADGFGV DDYSSESDVI IIPSALDFVS QDEMLTPLGR ENSBTAP00000012949/1-925 LMSLIV---- --------GV DDCSSESDVI VVPSALDFVS QDDMLTPLGR ENSTTRP00000013569/1-921 ---------- --------GV DDCSSESDVI VVPSALDFVS QDDMLTPLGR bmy_14054T0/1-484 -MSLIV---- --------GV DDCSSESDVI VVPSALDFVS QDDMLTPLGR BACU017058/1-890 -MSLIV---- --------GV DDCSSESDVI VVPSALDFVS QDDMLTPLGR 51 100 ENSP00000383402/1-950 LDKYAASENI FNRQMVARSL LDTLREVCDD ERDCIAVLER ISRLADDSEP ENSBTAP00000012949/1-925 LDKYAESENV FNRQMVARSL LDTLREVCDD ERECIAVLER ISRLADDSEP ENSTTRP00000013569/1-921 LDKYAASENV FNRQMVARSL LDTLREVCDD ERDCIAVLER ISRLADDSEP bmy_14054T0/1-484 LDKYAASENV FNRQMVARSL LDTLREVCDD ERDCIAVLER ISRLADDSEP BACU017058/1-890 LDKYAASENV FNRQMVARSL LDTLREVCDD ERDCIAVLER ISRLADDSEP 101 150 ENSP00000383402/1-950 TVRAELMEQV PHIALFCQEN RPSIPYAFSK FLLPIVVRYL ADQNNQVRKT ENSBTAP00000012949/1-925 TVRAELMEQV PHIALFCQEN RPAIPYAFSK YLLPIVVRYL ADQNNQVRKT ENSTTRP00000013569/1-921 TVRAELMEQV PHIALFCQEN RPAIPYAFSK YLLPIVVRYL ADQNNQVRKT bmy_14054T0/1-484 TVRAELMEQV PHIALFCQEN RPAIPYAFSK YLLPIVVRYL ADQNNQVRKT BACU017058/1-890 TVRAELMEQV PHIALFCQEN RPAIPYAFSK YLLPIVVRYL ADQNNQVRKT 151 200 ENSP00000383402/1-950 SQAALLALLE QELIERFDVE TKVCPVLIEL TAPDSNDDVK TEAVAIMC-- ENSBTAP00000012949/1-925 SQAALLALLE QELIERVDVE TKVCPVLVEL TAPDSNDDVK TEAVAIMC-- ENSTTRP00000013569/1-921 SQAALLALLE QELIERFDVE TKVCPVLVEL TAPDSNDDVK TEAVAIMC-- bmy_14054T0/1-484 SQAALLALLE QELIERFDVE TKVCPVLVEL TAPDSNDDVK TEAVAIMC-- BACU017058/1-890 SQAALLALLE QELIERFDVE TKVCPVLVEL TAPDSNDDVK TEAVAVCAAN 201 250 ENSP00000383402/1-950 --KMAPMVGK DITERLILPR FCEMCCDCRM FHVRKVCAAN FGDICSVVGQ ENSBTAP00000012949/1-925 --KMAPMVGK DITERLILPR FCEMCCDCRM FHVRKVCAAN FGDICSVVGQ ENSTTRP00000013569/1-921 --KMAPMVGK DITERLILPR FCEMCCDCRM FHVRKVCAAN FGDICSVVGQ bmy_14054T0/1-484 --KMAPMVGK DITERLILPR FCEMCCDCRM FHVRK----- ---------- BACU017058/1-890 FGDICSVVGQ QATEEMLLPR ---------- ---------- ---------- 251 300 ENSP00000383402/1-950 QATEEMLLPR FFQLCSDNVW GVRKACAECF MAVSCATCQE IRRTKLSALF ENSBTAP00000012949/1-925 QATEEMLLPR FFQLCSDNVW GVRKACAECF MAVSCATCQE IRRTKLSALF ENSTTRP00000013569/1-921 QATEEMLLPR FFQLCSDNVW GVRKACAECF MAVSCATCQE IRRTKLSALF bmy_14054T0/1-484 -------LPR FFQLCSDNVW GVRKACAECF MAVSCATCQE IRRTKLSALF BACU017058/1-890 ---------- FFQLCSDNVW GVRKACAECF MAVSCATCQE IRRTKLSALF 301 350 ENSP00000383402/1-950 INLISDPSRW VRQAAFQSLG PFISTFANPS SSGQYFKEES KSSEEMSVEN ENSBTAP00000012949/1-925 INLISDPSRW VRQAAFQSLG PFISTFANPS SSGQYFKEEN KSSEDTSVED ENSTTRP00000013569/1-921 INLISDPSRW VRQAAFQSLG PFISTFANPS SSGQYFKEEN KSSEDTSVED bmy_14054T0/1-484 INLISDPSRW VRQAAFQSLG PFISTFANPS SSGQYFKEEN KSSEDTSVED BACU017058/1-890 INLISDPSRW VRQAAFQSLG PFISTFANPS SSGQYFKEEN KSSEDTSVED 351 400 ENSP00000383402/1-950 KN--RTRDQE APEDVQVRPE DTPSDLSVSN SSVILENTME -DHAAEASGK ENSBTAP00000012949/1-925 KNSEKIRGAD APEDIEARP- ------TGGD SRVHLEETLA --EGAETLRQ ENSTTRP00000013569/1-921 KT--RTRDEE VPEDAQIRLE DVPTDPTVFN SSVKLEGALD PDIGAESPRK bmy_14054T0/1-484 KN--RTRDEE VPEDAQVRPE DVPTDPTVSN SSVKLEGAPD PDIGAESPRK BACU017058/1-890 KN--RTRDEE VPEDAQIRPE DVPADPTVSN SSVKLEGAPD PDIGTESPRK 401 450 ENSP00000383402/1-950 PLGEISVPLD SSLLCTLSSE SHQEAASNEN DKKPGNYKSM LRPEVGTTSQ ENSBTAP00000012949/1-925 PPGELSAPAE SSSPLRLSPE PPPDAAGSEE EQEPCPCGLA SQPEAGTGAQ ENSTTRP00000013569/1-921 PPG------D SSLPCPLSSE PHQEAASNED DKKPGTCRSA SQLEVGASAQ bmy_14054T0/1-484 PPG------D SSLPCPLSSE PHQEAASNED DKKLGTCRSA SRLEVGSSAQ BACU017058/1-890 PPG------D SSLPCPLSSE PHQEAASNED DKKPGTCRSA SRLEVGSSAQ 451 500 ENSP00000383402/1-950 DSALLDQELY NSFHFWRTPL PEIDLDIELE QNSGGKPSPE GPEEESEGPV ENSBTAP00000012949/1-925 DSAPLDQELY NSFHFWRTPL PEIDLDVELQ QGSGSEPGPQ GLDVEPEVPA ENSTTRP00000013569/1-921 DSAPLDQELY NSFHFWRTPL PEIDLDVELE QGSGNELGPE GLEGTPEATA bmy_14054T0/1-484 DSAPLDQELY NSFHFWRTPL PEIDLDVELE QGSGNKLGPE GLEGTPEATT BACU017058/1-890 DSAPLDQELY NSFHFWRTPL PEIDLDVELE QGPGNKLVPE GLEGMPEATS 501 550 ENSP00000383402/1-950 PSSPNITMAT RKELEEMIEN LEPHIDDPDV KAQVEVLSAA LRASSLDAHE ENSBTAP00000012949/1-925 PGSASITMAT RKELEEMIEN LEPHIDDPDV KAQVDVLAAA LRASSLDAGD ENSTTRP00000013569/1-921 PASANITTAT RKELEEMIEN LEPHIDDPDV KAQVDVLAAA LRASSLDTCD bmy_14054T0/1-484 PASANITMAT RKELEEMIEN LEPHIDDPDV K--------- ---------- BACU017058/1-890 PASANITVAT RQELEEMIEN LEPHIDDPDV KAQVDVLAAA LRASSLDACD 551 600 ENSP00000383402/1-950 ETISIEKRSD LQDELDINEL PNCKINQEDS VPLISDAVEN MDSTLHYIHS ENSBTAP00000012949/1-925 EAGEAPRRAP Q------DEL PSCRLDHDAA GPLISEE-QT MDSALHYIHN ENSTTRP00000013569/1-921 EASEAARRAP Q------DEL LGCRLDHGTA GPLTSETVEN MESALRYIHD bmy_14054T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU017058/1-890 EVSEAARRAP Q------DEL PGCRLDHGTS GPLTSEAVEN MESALRYIHD 601 650 ENSP00000383402/1-950 DSDLSNNSSF SPDEERRTKV QDVVPQALLD QYLSMTDPSR AQTVDTEIAK ENSBTAP00000012949/1-925 DSDSGTSSGF SPDEERRAKV QDVVPQALLD QYLSMTDPSR AQTVDTEIAK ENSTTRP00000013569/1-921 DSDSGTSGGF SPDEERRAKV QDVVPQALLD QYLSMTDPSR AQTVDTEIAK bmy_14054T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU017058/1-890 DSDSGTSGGF SPDEERRAKV QDVVPQALLD QYLSMTDPSR AQTVDTEIAK 651 700 ENSP00000383402/1-950 HCAYSLPGVA LTLGRQNWHC LRETYETLAS DMQWKVRRTL AFSIHELAVI ENSBTAP00000012949/1-925 HCAYSLPGVA LTLGRQNWHC LRETYETLAS DMQWKVRRTL AFSIHELAVI ENSTTRP00000013569/1-921 HCAYSLPGVA LTLGRQNWHC LRETYETLAS DMQWKVRRTL AFSIHELAVI bmy_14054T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU017058/1-890 HCAYSLPGVA LTLGRQNWHC LRETYETLAS DMQWKVRRTL AFSIHELAVI 701 750 ENSP00000383402/1-950 LGDQLTAADL VPIFNGFLKD LDEVRIGVLK HLHDFLKLLH IDKRREYLYQ ENSBTAP00000012949/1-925 LGDQLTAADL VPIFNGFLKD LDEVRIGVLK HLHDFLKLLH IDKRREYLYQ ENSTTRP00000013569/1-921 LGDQLTAADL VPIFNGFLKD LDEVRIGVLK HLHDFLKLLH IDKRREYLYQ bmy_14054T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU017058/1-890 LGDQLTAADL VPIFNGFLKD LDEVRIGVLK HLHDFLKLLH IDKRREYLYQ 751 800 ENSP00000383402/1-950 LQEFLVTDNS RNWRFRAELA EQLILLLELY SPRDVYDYLR PIALNLCADK ENSBTAP00000012949/1-925 LQEFLVTDNS RNWRFRAELA EQLILLLELY SPRDVYDYLR PIALNLCADK ENSTTRP00000013569/1-921 LQEFLVTDNS RNWRFRAELA EQLILLLELY SPRDIYDYLR PIALNLCADK bmy_14054T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU017058/1-890 LQEFLVTDNS RNWRFRAELA EQLILLLELY SPRDIYDYLR PIALNLCADK 801 850 ENSP00000383402/1-950 VSSVRWISYK LVSEMVKKLH AATPPTFGVD LINELVENFG RCPKWSGRQA ENSBTAP00000012949/1-925 VSSVRWISYK LVSEMVRKLH RAAPPTFGAD LIQELVESFG RCPRWSGRQA ENSTTRP00000013569/1-921 VSSVRWISYK LVGEMVRKLH RAAPPTFGVD LIRELVENFG RCPRWSGRQA bmy_14054T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU017058/1-890 VSSVRWISYK LVGEMVRKLH RAAPPTFGVD LIRELVESFG RCPRWSGRQA 851 900 ENSP00000383402/1-950 FVFVCQTVIE DDCLPMDQFA VHLMPHLLTL ANDRVPNVRV LLAKTLRQTL ENSBTAP00000012949/1-925 FVFVCQTVIE DDCLPMDQFA VQLMPHLLTL ANDRVPNVRV LLAKTLRQTL ENSTTRP00000013569/1-921 FVFVCQTVIE DECLPMDQFA VHLMPHLLTL ANDRVPNVRV LLAKTLRQTL bmy_14054T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU017058/1-890 FVFVCQTVIE DECLPMDQFA VHLMPHLLTL ANDRVPNVRV LLAKTLRQTL 901 950 ENSP00000383402/1-950 LEKDYFLASA SCHQEAVEQT IMALQMDRDS DVKYFASIHP ASTKISEDAM ENSBTAP00000012949/1-925 LEKEHFLTSA SCHQEAVEQT IMALQMDRDS DVKYFASTHP ASTRISEDAL ENSTTRP00000013569/1-921 LEKEYFLTSA SCHQEAVEQT IMALQMDCDS DVKYFASIHP ASTKISEDAM bmy_14054T0/1-484 ---------- ---------- ---------- ---------- ---------- BACU017058/1-890 LEKEYFLTSA SCHQEAVEQT IMALQMDRDS DVKYFASIHP ASTKISEDAM 951 1000 ENSP00000383402/1-950 STASSTY ENSBTAP00000012949/1-925 STASSTY ENSTTRP00000013569/1-921 STASSTY bmy_14054T0/1-484 ------- BACU017058/1-890 STASSTY