KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:48:20 2014 Check: 00 .. Name: ENSP00000419457/1-691 Len: 717 Check: 2051 Weight: 1.00 Name: ENSBTAP00000012965/1-499 Len: 717 Check: 9481 Weight: 1.00 Name: ENSTTRP00000006581/1-435 Len: 717 Check: 5743 Weight: 1.00 Name: bmy_19832T0/1-573 Len: 717 Check: 5044 Weight: 1.00 Name: BACU010927/1-626 Len: 717 Check: 4693 Weight: 1.00 // 1 50 ENSP00000419457/1-691 MALLLTLTSP DLEGTW---- DTRDKDGFKA QEGPPLAVPE FPVCGLYRIY ENSBTAP00000012965/1-499 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006581/1-435 TAPPFTL-SL DLEGTWVTGY QTHRLKGFIA YEVLSPGLPG PPVR------ bmy_19832T0/1-573 ---------- ---------- ---------- ---------- ---------- BACU010927/1-626 --------MI TLFDKWTNES FRSNRTPAAD QEAARPPGLG SSFS------ 51 100 ENSP00000419457/1-691 GVCGSFSSFF IIRCSLCALE TLKSPQHDPL EIPEQSLKLI PLVSGKRELT ENSBTAP00000012965/1-499 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006581/1-435 ---------- ---------- --VQRQHGPL ETPE-SLKLT FQVSGRRELT bmy_19832T0/1-573 ---------- ---------- --MEPSPEP- ---------- ---------- BACU010927/1-626 ---------- ---------- --RAKVRG-- ---------- ------CRLS 101 150 ENSP00000419457/1-691 RGQKAGEKPL AAGP-GEEEL LRGSAPHAQD TQSEELPPSC TISGEKKPPA ENSBTAP00000012965/1-499 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006581/1-435 ESQEGGDKPP AARL-EEEEP LQSSAPHTQE APSEDVRLSC AAPGEKQPSE bmy_19832T0/1-573 RGQEGGDKPP AARLEEEEEP LQSSAPHTQE APSEDVPLSC AAPGEKQPSE BACU010927/1-626 TGQEGGDKPP AARLEEEEEP LQSSAPHTQE APSEDVPLSC AAPGDKQPAE 151 200 ENSP00000419457/1-691 VSGEATGADA GRLCPPPRSR APHKDRTLAR SRPQTQGEDC SLPVGEVKIG ENSBTAP00000012965/1-499 ---------- MKACQRPSPG ALHEDRSLAS PRPQPQGQGP PFPGTEGRLG ENSTTRP00000006581/1-435 APGEVAGAGA GRACQRQGSG ALRKDRALGP PRPQPQGEGH PLPVREGKLG bmy_19832T0/1-573 APGEVAGDGA GRACQRQGSG AVRKDRTLGL PRPQPQGEGH PLPVREGKLG BACU010927/1-626 APGEVAGAGA GRACQRQGSG AVRKDRTLGP PRPQPPGEGH PFPAREGKLG 201 250 ENSP00000419457/1-691 KRSYSPAPGK QKKPNAMGLA PTSSPGAPNS ARATHNPVPC GSGRGPCHLA ENSBTAP00000012965/1-499 KRPSSPATGK QKKPRDVGPA STASPSSVNP ARATYNPGPC GLGRGSCHVA ENSTTRP00000006581/1-435 KRPYSPATGK QKKPNAVGLD STASPSVANP ARATYNPVPC GSGRGSCHLA bmy_19832T0/1-573 KRPYSPAAGK QKKPNXVGLD SMASPSVANA ARATYNPVPC GSGRGSCHLA BACU010927/1-626 KRPYSPAAGK QKKPNAVGPD STASPSVANP ARATYNPVPC GSGRGSCHLA 251 300 ENSP00000419457/1-691 NLLSTLAQSN QNRDHKQGPP EVTCQIRKKT RTLYRSDQLE ELEKIFQEDH ENSBTAP00000012965/1-499 NLLNTLAQKN QNLDQEKRSP EVTCQVRKKT RTLYRSDQLE ELERLFQDDH ENSTTRP00000006581/1-435 NLLSTLAQNS QNTDQKK-SP DVTCQGRKKT RTLYRSDQLE ELEKLFQEDH bmy_19832T0/1-573 NLLSTLAQNS QNTDQKK-SP EVTCQGRKKT RTLYRSDQLE ELERLFQEDH BACU010927/1-626 NLLSTLAQNT QNTDQKK-SP EVTCQGRKKT RTLYRSDQLE ELERLFQEDH 301 350 ENSP00000419457/1-691 YPDSDKRREI AQTVGVTPQR IMVKGAGSLV AGWSGGGPTI ETLELQSERS ENSBTAP00000012965/1-499 YPDSDKRREI AQTVGVTPQR IM-------- ---------- ---------- ENSTTRP00000006581/1-435 YPDSDKRREI AQTVGVTPQR IM-------- ---------- ---------- bmy_19832T0/1-573 YPDSDKRREI AQTVGVTPQR IM-------- ---------- ---------- BACU010927/1-626 YPDSDKRREI AQTVGVTPQR IM-------- ---------- ---------- 351 400 ENSP00000419457/1-691 AVAWVWFQNR RAKWRKMEKL NGKESKDNPA APG----PAS SQCSSAAEIL ENSBTAP00000012965/1-499 ----VWFQNR RAKWR---KM NGKESKDAPA GPALTPAPAS NQCSSVAELP ENSTTRP00000006581/1-435 ----VWFQNR RAKWRKVEKM TGKESTDAAA GPALS--PTS NQCSSAAGPP bmy_19832T0/1-573 ----VWFQNR RAKWRKVEKM TGKESKDATA GPALS--PTS NQCSSAAGPP BACU010927/1-626 ----VWFQNR RAKWRKVEKV AGKEGKDAAG GPALS--PTS NQCSSAAGPP 401 450 ENSP00000419457/1-691 PAVPMEPKPD PFPQESPLDT FP-------- ------EPPM LLTSDQTLAP ENSBTAP00000012965/1-499 PTESTMLEPG TL----PQDS LP-------- ------EPSM LLTSDQTLGP ENSTTRP00000006581/1-435 PAVPADREPG TFAQESPLDP LP-------- ------EPPM LLTSDQTLAP bmy_19832T0/1-573 PAVPADREPG TFAQESPLDP LP-------- ------EPPM LLTSDQTLAP BACU010927/1-626 PAVPADREPG TFAQESPLDP LPGELTTFRG LSGEYSEPPM LLTSDQTLAP 451 500 ENSP00000419457/1-691 TQPSEGAQRV -VTPPLFSPP PVRRADLPFP LGPVHTPQLM PLLMDVAGSD ENSBTAP00000012965/1-499 NLQNEGPQRR PVTPPLFSPP PVRRANLPFP LGPVHAPQLM PLLLDTLGSD ENSTTRP00000006581/1-435 TQQSEGAQKV EVTPPLFSPP PVRRANLPFP LGPVHTSQLM SLLLDTPGNE bmy_19832T0/1-573 TQQSEGAQRV DVTPPLFSPP PVRRANLPFP LGPVHTSQLM SLLLDTPGNE BACU010927/1-626 TQQSEGAQRV DVTPPLFSPP PVRRANLPFP LGPVHTSQLM SLLLDTPGNE 501 550 ENSP00000419457/1-691 SSHKDGPCGS WGTSITLPPP CSYLEELEPQ DYQQ-SNQPG PFQFSQAPQP ENSBTAP00000012965/1-499 SSHKDGPCGL WGTSITPPPA CSYLEDLELQ EYQPSSSQPG SFPFSQGPQT ENSTTRP00000006581/1-435 SSRKDGPCGS WGTRY----- ---------- ---------- ---------- bmy_19832T0/1-573 SSRKDGPCGS WGTSVTPPPA CSYLEELEPQ EYQP-GSQPG PFQFSQAPQT BACU010927/1-626 SSRKDGPCGP WGTSVTPPPA CSYLEELEPQ EYQP-GSQPG PFQFSQAPQT 551 600 ENSP00000419457/1-691 PLFQSPQPKL PYLPTFPFSM PSSLTLPPPE DSLFMFPCGP SGGTSQGYCP ENSBTAP00000012965/1-499 QFFQHPQPQF PYLHPFP--L PSSLTPPLPE DPLFALSCGP GGGSSQGYFP ENSTTRP00000006581/1-435 ---------- ---------- ---------- ---------- ---------- bmy_19832T0/1-573 QFFQHPQPQF PYLHPFPFHM PSSLTPPLLE DSLSTLSYGP SGGTSQGYFP BACU010927/1-626 QLFQHPQPQF PYLHPFPFHM PSSLTPPLLE DSLSTLSCGP SRGTPQGHFP 601 650 ENSP00000419457/1-691 GASSGQILMQ PPAGNIGTAS WSDPCLPELP FPGPFCPQAL GHPPGGDGYF ENSBTAP00000012965/1-499 GPPSGPVLLQ PPAGNVGTVP WADPCLPDLP FPSAFCPQSL GGPPGGDGCF ENSTTRP00000006581/1-435 ---------- ---------- ---------- ---------- ---------- bmy_19832T0/1-573 GPPSGQILLQ PPAGNMGTVP WNDPCLPDLP FPSSFCPQAL GGPPGGDGYF BACU010927/1-626 GPPSGQILLQ PPAGNMGTVP WNDPCLPDLP FPSSFCPQAL GGPPGGDGYF 651 700 ENSP00000419457/1-691 PDLFPTPCPQ ALGRQPSSAL SWMPEGARPG TGPL-LSKAK EEPPAASLDQ ENSBTAP00000012965/1-499 LDLFAAPYAQ ASGRLPSPGL TQMPESTPPA AGKAPLSQAQ EEPPAAPGER ENSTTRP00000006581/1-435 ---------- ---------- ---------- ---------- ---------- bmy_19832T0/1-573 LDLFAAPCAQ ASSRQLSPGL ARLPEGTRPG AEPL-LSKAQ EELPAAAVEL BACU010927/1-626 LDLFAAPCAQ ASSRQPSPGL ARLPEGTRPG AEPL-LSKAQ EELPAAAVEL 701 750 ENSP00000419457/1-691 PSALEEARGD DKNSHVP ENSBTAP00000012965/1-499 PPAPEE---E DKSGHGP ENSTTRP00000006581/1-435 ---------- ------- bmy_19832T0/1-573 PSAPEEGREE DQTSHGP BACU010927/1-626 PSAPEEGREE DQTSHGP