KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:48:21 2014 Check: 00 .. Name: ENSP00000216492/1-457 Len: 604 Check: 8484 Weight: 1.00 Name: ENSBTAP00000012973/1-449 Len: 604 Check: 1119 Weight: 1.00 Name: bmy_08705T0/1-562 Len: 604 Check: 1590 Weight: 1.00 Name: ENSTTRP00000014495/1-445 Len: 604 Check: 4525 Weight: 1.00 // 1 50 ENSP00000216492/1-457 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000012973/1-449 ---------- ---------- ---------- ---------- ---------- bmy_08705T0/1-562 MGKGGRGGSH DVISGVRGVY KWGARVPLLQ CPSPVGKGGG RIDRRTHTET ENSTTRP00000014495/1-445 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000216492/1-457 ---------- ---------- ---------- ---------- --MRSAAVLA ENSBTAP00000012973/1-449 ---------- ---------- ---------- ---------- --MRSAAVLA bmy_08705T0/1-562 LRPPSPHLCP RGRPERPVQP PLAPVRAAPG PRPPAARRPG FAMRSAAVLA ENSTTRP00000014495/1-445 ---------- ---------- ---------- ---------- --MRSAAVLA 101 150 ENSP00000216492/1-457 LLLCAGQVTA LPVNSPMNKG DTEVMKCIVE VISDTLSKPS PMPVSQECFE ENSBTAP00000012973/1-449 LLLCAGQVIA LPVNSPMNKG DTEVMKCIVE VISDTLSKPS PMPVSKECFE bmy_08705T0/1-562 LLLCAGQVIA LPVNSPMNKG DTEVMKCIVE VISDTLSKPS PMPVSQECFE ENSTTRP00000014495/1-445 LLLCAGQVIA LPVNSPINKG DTEXXXXIVE VISDTLSKPS PMPVSQECFE 151 200 ENSP00000216492/1-457 TLRGDERILS ILRHQNLLKE LQDLALQGAK ERAHQQKKHS GFEDELSEVL ENSBTAP00000012973/1-449 TLRGDERILS ILRHQNLLKE LQDLALQGAK ERTHQQKKHS SYEDELSEVL bmy_08705T0/1-562 TLRGDERILS ILRHQNLLKE LQDLALQ--- ---------- ---------- ENSTTRP00000014495/1-445 TLRGDERILS ILRHQNLLKE LQDLALQGAK ERAHQQKKHS SYEDELSEVL 201 250 ENSP00000216492/1-457 ENQSSQAELK EAVEEPSSKD VMEKREDSKE AEKSGEATDG ARPQALPEPM ENSBTAP00000012973/1-449 EKPTDQAEPK EVTEEVSSKD AAEKRDDFKE VEKSDEDSDG DRPQASPGLG bmy_08705T0/1-562 ---------- EGTEEASSKD ATEKRGDSKE VERNGEDADG ARPQAAPELG ENSTTRP00000014495/1-445 EKQNDQAELK EGTEEMSSKD AMEKRGDSKE VERNGEDADG PRPQAAPELG 251 300 ENSP00000216492/1-457 QESKAEGNNQ APGEEEEEEE EATNTHPPAS LPSQKYPGPQ AEGDSEGLSQ ENSBTAP00000012973/1-449 PGPKVEEDNQ APG---EEEE APSNAHPLAS LPSPKYPGPQ AKEDSEGPSQ bmy_08705T0/1-562 QGSKVEEDNQ APG----EEE ASSNTHPLAS LSSQKHPGPQ AEEDSEDPSQ ENSTTRP00000014495/1-445 QGSKAEEDNQ APG----EDE ASSNTHPLAS LSSQKHPGPQ AEEDSEGPSQ 301 350 ENSP00000216492/1-457 GLVDREKGLS AEPGWQAKRE EEE------- ---------- ---------- ENSBTAP00000012973/1-449 GPASREKGLS AEQGRQTERE EEE------- ---------- ---------- bmy_08705T0/1-562 GPAGREKGLS AKQGQQAKRE EEEEKEEEEE AASPARNTQA HRPRRTARTP ENSTTRP00000014495/1-445 GPVGREKGLS AEQGQQAKR- ---------- ---------- ---------- 351 400 ENSP00000216492/1-457 ---------- ---------- ----EEEEEA EAGEEAVPEE EG-PTVVLNP ENSBTAP00000012973/1-449 ---------- ---------- ----EKWEEA EAREKAVPEE ESPPTAAFKP bmy_08705T0/1-562 PRVQEKGLSA KQGQQAKREE EEEKEEEEEA EAGEKAVPEE ESPPTAAFNP ENSTTRP00000014495/1-445 ---------- ---------- ------EEEA EAGEEAVPEE ESAPTAALNP 401 450 ENSP00000216492/1-457 HPSLGYKEIR KGES-RSEAL AVDGAGKPGA EEAQDPEGKG EQEHSQQKEE ENSBTAP00000012973/1-449 PPSLGNKETQ RAAPGWPE-- --DGAGKMGA EEAKPPEGKG EWAHSRQ--E bmy_08705T0/1-562 HPSLSYKEMQ RG---WPEAL AVDGAGKTGA EEAQSPKGKG EREHPQQ-EE ENSTTRP00000014495/1-445 HPSLGYKEMQ RGES-WPEAL AVDGAGKTGA EEAPSPKGKG ERDHCLQ--- 451 500 ENSP00000216492/1-457 EEEMAVVPQG LFRGGKSGEL EQ--EEERLS KEWEDSKRWS KMDQLAKELT ENSBTAP00000012973/1-449 EEEMARAPQV LFRGGKSGEP EQ---EEQLS KEWEDAKRWS KMDQLAKELT bmy_08705T0/1-562 EEEVAGAPQG LFRGGKNGEP EQEEEEERLS TEWEDAKRWS KMDQLATELT ENSTTRP00000014495/1-445 EEATAGAPQG LFRGGKSAQP EQ-EGEARLS KEWEDAKRRS AMDQLDKELT 501 550 ENSP00000216492/1-457 AEKRLEGQEE EEDNRDSSMK LSFRARAYGF RGPGPQLRRG WRPSSREDSL ENSBTAP00000012973/1-449 AEKRLEGEEE EEEDPDRSMR LSFRARGYGF RGPRLQLRRG WRPNSREDSV bmy_08705T0/1-562 AEKRLEGQED EGD-PDRATK LSFRARGYDF GGPGLQLRRG WRPSSREDSV ENSTTRP00000014495/1-445 AERRPQGEAA EED-PDRAMK LSFRARGYDF SGPGLQLPRG WRPSSREDSV 551 600 ENSP00000216492/1-457 EAGLPLQVRG YPEEKKEEEG SANRRPEDQE LESLSAIEAE LEKVAHQLQA ENSBTAP00000012973/1-449 EAGLPLQVRG YPEEKKEEEG SANRRPEDQE LESLSAIEAE LEKVAHQLEE bmy_08705T0/1-562 EAGLPLQVRG YPEEKKEEEG SANRRPEDQE LESLSAIEAE LEKVAHELQE ENSTTRP00000014495/1-445 EAGLPLPVRG YPEEKKEEEG SANRRPEDQE LESLSAIEAE LEKVAHELQG 601 650 ENSP00000216492/1-457 LRRG ENSBTAP00000012973/1-449 LRRG bmy_08705T0/1-562 LRRG ENSTTRP00000014495/1-445 LRRG