KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:48:31 2014 Check: 00 .. Name: BACU001179/1-1121 Len: 1228 Check: 6625 Weight: 1.00 Name: ENSTTRP00000016143/1-711 Len: 1228 Check: 7244 Weight: 1.00 Name: ENSP00000346733/1-834 Len: 1228 Check: 4646 Weight: 1.00 Name: bmy_10024T0/1-699 Len: 1228 Check: 2783 Weight: 1.00 Name: ENSBTAP00000013003/1-820 Len: 1228 Check: 2269 Weight: 1.00 // 1 50 BACU001179/1-1121 MGVGRRDLRG VGPPGRTLLS AHLVPVSTLV STWATIDEVE TDVVEIEAKL ENSTTRP00000016143/1-711 MTVEFEECIK DSPRFR---- ---------- ---ATIDEVE TDVVEIEAKL ENSP00000346733/1-834 MTVEFEECVK DSPRFR---- ---------- ---ATIDEVE TDVVEIEAKL bmy_10024T0/1-699 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013003/1-820 ---------- ---RRR---- ---------- ---ATIDEVE TDVVEIEAKL 51 100 BACU001179/1-1121 DKLVKLCSGV IEAGKAYVTT NRLFVSGVRD LSQQCQGDTV IS-------- ENSTTRP00000016143/1-711 DKLVKLCSGV IEAGKAYVTT NRLFVSGVRD LSQQCQGDTV ISECLQRFGD ENSP00000346733/1-834 DKLVKLCSGM VEAGKAYVST SRLFVSGVRD LSQQCQGDTV ISECLQRFAD bmy_10024T0/1-699 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013003/1-820 DKLVKLCSSM IEAGKAYVTT NRLFVSGIRD LSQQCQGDTV ISECLQRFGD 101 150 BACU001179/1-1121 ---------- ILFDQAQRSV RQQLHNFVKE DVRKFKETKK QFDRVREDME ENSTTRP00000016143/1-711 SLQEMVTYHM ILFDQAQRSV RQQLHNFVKE DVRKFKETKK QFDRVREDME ENSP00000346733/1-834 SLQEVVNYHM ILFDQAQRSV RQQLQSFVKE DVRKFKETKK QFDKVREDLE bmy_10024T0/1-699 ----MVTYHM ILFDQAQRSV RQQLHNFVKE DVRKFKETKK QFDRVREDME ENSBTAP00000013003/1-820 SLQEMVTYHM ILFDQAQRSV RQQLHNFVKE DVRKFKETKK QFDKVREDME 151 200 BACU001179/1-1121 LSLVRNAQAP RHRPHEVEEA TGALILARKC FRHLALDYVL QINVLQAKKK ENSTTRP00000016143/1-711 LSLARNAQAP RHRPHEAEEA AGALVLARKC FRHLALDYVL QINVLQAKKK ENSP00000346733/1-834 LSLVRNAQAP RHRPHEVEEA TGALTLTRKC FRHLALDYVL QINVLQAKKK bmy_10024T0/1-699 LSLVRNAQAP RHRPHEVEEA TGALILARKC FRHLALDYVL QINVLQAKKK ENSBTAP00000013003/1-820 LSLVRNAQAP RHRPHEVEEA TGALILARKC FRHLALDYVL QINVLQAKKK 201 250 BACU001179/1-1121 FEILDSMLSF MHAQYSFFQQ GYSLLHQLDP YMKKLAAELD QLVIDSAVEK ENSTTRP00000016143/1-711 FEILDSMLSF MHAQYSFFQQ GYSLLHQLDP YMKKLAAELD QLVIDSAVEK ENSP00000346733/1-834 FEILDSMLSF MHAQSSFFQQ GYSLLHQLDP YMKKLAAELD QLVIDSAVEK bmy_10024T0/1-699 FEILDSMLSF MHAQYSFFQQ GYSLLHQLDP YMKKLAAELD QLVIDSAVEK ENSBTAP00000013003/1-820 FEILDSMLSF MHAQYSFFQQ GYSLLHQLDP YMKKLAAELD QLVIDSAVEK 251 300 BACU001179/1-1121 REMERKHAAI QQRTLLQPER PAVSPQPRAG AHWGPGSDHP QDFSYDEPKV ENSTTRP00000016143/1-711 REMERKHAAI QQRTLL---- ---------- ---------- QDFSYDEPKV ENSP00000346733/1-834 REMERKHAAI QQRTLL---- ---------- ---------- QDFSYDESKV bmy_10024T0/1-699 REMERKHAAI QQR------- ---------- ---------- -DFSYDEPKV ENSBTAP00000013003/1-820 REMERKHAAI QQRTLL---- ---------- ---------- QDFSYDEPKV 301 350 BACU001179/1-1121 EFDVDAPSGV VMEGYLFKRA SNAFKTWNRR WFSIQNSQLV YQKKLKDVLT ENSTTRP00000016143/1-711 EFDVDAPSGV VMEGYLFKRA SNAFKTWNRR WFSIQNSQLV YQKKLKDVLT ENSP00000346733/1-834 EFDVDAPSGV VMEGYLFKRA SNAFKTWNRR WFSIQNSQLV YQKKLKDALT bmy_10024T0/1-699 EFDVDAPSGV VMEGYLFKRA SNAFKTWNRR WFSIQNSQLV YQKKLKDVLT ENSBTAP00000013003/1-820 EFDVDAPSGV VMEGYLFKRA SNAFKTWNRR WFSIQNSQLV YQKKLKDVLT 351 400 BACU001179/1-1121 VVVDDLRLCS VKPCEDTERR FCFEVVSPTK SCMLQADSEK LRQAWVQAVQ ENSTTRP00000016143/1-711 VVVDDLRLCS VKPCEDVERR FCFEVVSPTK SCMLQADSEK LRQAWVQAVQ ENSP00000346733/1-834 VVVDDLRLCS VKPCEDIERR FCFEVLSPTK SCMLQADSEK LRQAWVQAVQ bmy_10024T0/1-699 VVVDDLRLCS VKPCEDIERR FCFEVVSPTK SCMLQADSEK LRQAWVQAVQ ENSBTAP00000013003/1-820 VVVDDLRLCS VKPCEDVERR FCFEVVSPTK SCMLQADSEK LRQAWVQAVQ 401 450 BACU001179/1-1121 ASIASAYRES PDSCYSERLD RTASPSTSSI DSATDSRERS VKGESVLQRV ENSTTRP00000016143/1-711 ASIASAYRES PDSCYRERLD RTASPSTSSI DSATDSRERS AKGDXXXXXX ENSP00000346733/1-834 ASIASAYRES PDSCYSERLD RTASPSTSSI DSATDTRERG VKGESVLQRV bmy_10024T0/1-699 ASIASAYRES PDSCYSERLD RTASPSTSSI DSATDSRERS VKGESVLQRM ENSBTAP00000013003/1-820 ASIASAYRES PDSCYSERLD RTASPSTSSI DSATDSRERS VKGESVLQRV 451 500 BACU001179/1-1121 QHVAGNSQCG D-CGQPDPRW ASINLGVLLC IECSGIHRSL GVHCSKVRSL ENSTTRP00000016143/1-711 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000346733/1-834 QSVAGNSQCG D-CGQPDPRW ASINLGVLLC IECSGIHRSL GVHCSKVRSL bmy_10024T0/1-699 QHVAGNSQCG D-CGQPDPRW ASINLGVLLC IECSGIHRSL GVHCSKVRSL ENSBTAP00000013003/1-820 QNVAGNSQCG D-CGQPDPRW ASINLGVLLC IECSGIHRSL GVHCSKVRSL 501 550 BACU001179/1-1121 TLDSWEPELL KLMCELGNST VNRIYEAQCE GPGSRKPTAS SPRQDKEAWI ENSTTRP00000016143/1-711 XXXXXXXXXX XXXXXXGNST VNQIYEAQCA GPGSRKPTAS SPRQDKEAWV ENSP00000346733/1-834 TLDSWEPELL KLMCELGNSA VNQIYEAQCE GAGSRKPTAS SSRQDKEAWI bmy_10024T0/1-699 TLDSWEPELL KLMCELGNST MNRIYEAQCE GPGSRKPTAS SPSSA----- ENSBTAP00000013003/1-820 TLDSWEPELL KLMCELGNST VNQIYEAQCE GPGSRKPTAS SPRQDKEAWI 551 600 BACU001179/1-1121 KDKYVEKKFV RRPPSAPARE APRRWRAQKC QRHHSSPRAH TTRRGKIRME ENSTTRP00000016143/1-711 KDKYVEKKFV RKPPSAPARE APRRWRAQKC PRHHSSPRAR TTRRSKIRME ENSP00000346733/1-834 KDKYVEKKFL RKAPMAPALE APRRWRVQKC LRPHSSPRAP TARR-KVRLE bmy_10024T0/1-699 -------HLP PRPGSRPA-- ---------- ---------- ---------- ENSBTAP00000013003/1-820 KDKYVEKKFV RRPPSAPARE APQRWRVQKC QRHHSSPRAP APRRSKVRME 601 650 BACU001179/1-1121 PVPPSVAALC S-GSTEPRFR RDSLFCPDEL DSLFSYFDAG AAAAGPRRLP ENSTTRP00000016143/1-711 PVPPSVAALC S-GSTEPRFR RDSLFCPDEL DSLFSYFDAG AAAAGPRS-- ENSP00000346733/1-834 PVLPCVAALS SVGTLDRKFR RDSLFCPDEL DSLFSYFDAG AAGAGPRS-- bmy_10024T0/1-699 ---------- --GSTEPRFR RDSLFCPDEL DSLFSYFDAG AAAAGPRSKS ENSBTAP00000013003/1-820 PVLPSVAALC S-GSMEPRFR RDSLFCPDEL DSLFSYFDAG AAAAGPRS-- 651 700 BACU001179/1-1121 SASAPS---- ---------- ---------I PRRAGGVPVF PPGRGGRQKR ENSTTRP00000016143/1-711 ---------- ---------- ---------- ---------- ---------- ENSP00000346733/1-834 ---------- ---------- ---------- ---------- ---------- bmy_10024T0/1-699 PAAHPATPPT PPLSRGSMAG ARHARLEGGI PRRVGGVPAF PQGCGSSQKR ENSBTAP00000013003/1-820 ---------- ---------- ---------- ---------- ---------- 701 750 BACU001179/1-1121 SGPPLLADPG GLSSDSGLGG SSDGSSDVLA FGAGSVVDRV AEEGGCAAPQ ENSTTRP00000016143/1-711 ---------- -LSSDS-LRG SSDGSSDVLA FGVGSVVDRV TEEEGAESEE ENSP00000346733/1-834 ---------- -LSSDSGLGG SSDGSSDVLA FGSGSVVDSV TEEEGAESEE bmy_10024T0/1-699 SGPPLLADPA GLSSDSGLGG SSDGSSDVLA FGVGSVVDRV TEEEGAESEE ENSBTAP00000013003/1-820 ---------- -LSSDSGLGG SSDGSSDVLA FGVGSVVDRV AEEEGAESEE 751 800 BACU001179/1-1121 SGPXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000016143/1-711 SSGEADG--E AEA------- ---------- ---------- ---------- ENSP00000346733/1-834 SSGEADGDTE AEA------- ---------- ---------- ---------- bmy_10024T0/1-699 SSGEADG--E AEA------- ---------- ---------- ---------- ENSBTAP00000013003/1-820 SSGEADG--E AET------- ---------- ---------- ---------- 801 850 BACU001179/1-1121 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000016143/1-711 ---------- ---------- ---------- ---------- ---------- ENSP00000346733/1-834 ---------- ---------- ---------- ---------- ---------- bmy_10024T0/1-699 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013003/1-820 ---------- ---------- ---------- ---------- ---------- 851 900 BACU001179/1-1121 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000016143/1-711 ---------- ---------- ---------- ---------- ---------- ENSP00000346733/1-834 ---------- ---------- ---------- ---------- ---------- bmy_10024T0/1-699 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013003/1-820 ---------- ---------- ---------- ---------- ---------- 901 950 BACU001179/1-1121 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000016143/1-711 ---------- ---------- ---------- ---------- ---------- ENSP00000346733/1-834 ---------- ---------- ---------- ---------- ---------- bmy_10024T0/1-699 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013003/1-820 ---------- ---------- ---------- ---------- ---------- 951 1000 BACU001179/1-1121 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000016143/1-711 ---------- ---------- ---------- ----WGLADV RELHPGLLAH ENSP00000346733/1-834 ---------- ---------- ---------- ----WGLADV RELHPGLLAH bmy_10024T0/1-699 ---------- ---------- ---------- ----WGLADV RELHPGLLAH ENSBTAP00000013003/1-820 ---------- ---------- ---------- ----WGLADV RELHPGLLAH 1001 1050 BACU001179/1-1121 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000016143/1-711 RAARTRDLPA LAAALAQGAE VNWADAEDEG KTPLVQAVLG ---------- ENSP00000346733/1-834 RAARARDLPA LAAALAHGAE VNWADAEDEG KTPLVQAVLG ---------- bmy_10024T0/1-699 SAARTRDLPA LAAALAQGAE VNWADAEDEG KTPLVQAVLG ---------- ENSBTAP00000013003/1-820 RAARTRDLPA LAAALAHGAE VNWADAEDEG KTPLVQAVLG ---------- 1051 1100 BACU001179/1-1121 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXGG ENSTTRP00000016143/1-711 ---------- ---------- ---------- ---------- ---------- ENSP00000346733/1-834 ---------- ---------- ---------- ---------- ---------- bmy_10024T0/1-699 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013003/1-820 ---------- ---------- ---------- ---------- ---------- 1101 1150 BACU001179/1-1121 KWAAGG---- ---------- ---------- ---------- ---------- ENSTTRP00000016143/1-711 ---------- ---------- ---------- ---------- ---------- ENSP00000346733/1-834 ----GSLIVC EFLLQNGADV NQRDSRGR-- APLHHATLLG RTGQVCLFLK bmy_10024T0/1-699 ----VS---- ---------- ------GRRV APFH------ ---------- ENSBTAP00000013003/1-820 ----GSLIVC EFLLQNGADV NQRDSHGR-- APLHHATLLG RTGQVCLFLK 1151 1200 BACU001179/1-1121 ---------S ASRGPPSSS- ---------- LRLARMAEEM REAEAPPGQP ENSTTRP00000016143/1-711 ---------- ---------- ---------- ---------- ---------- ENSP00000346733/1-834 RGADQHALDQ EQRDPLAIAV QAANADIVTL LRLARMAEEM REAEAAPGPP bmy_10024T0/1-699 ---------G AHAGPLPSAV DR-------- LRLARMAEEM REAEAPPGQP ENSBTAP00000013003/1-820 RGADQHALDH AQQDPLSIAV QEANADIVTL LRLARMAEEM REAEAPSGQP 1201 1250 BACU001179/1-1121 GPLAGSSPTE LQFRRCIQEF ISLHLDES ENSTTRP00000016143/1-711 ---------- ---------- -------- ENSP00000346733/1-834 GALAG-SPTE LQFRRCIQEF ISLHLEES bmy_10024T0/1-699 GPLSGSSPTE LQYRRCIQEF ISLHLDES ENSBTAP00000013003/1-820 GSLTGSSPTE LQYRRCIQEF ISLHLDES