KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:48:34 2014  Check: 00 ..

 Name: ENSTTRP00000008775/1-165  Len:    215  Check:  1746  Weight:  1.00
 Name: bmy_11676T0/1-194         Len:    215  Check:  3173  Weight:  1.00
 Name: ENSP00000244766/1-142     Len:    215  Check:  1584  Weight:  1.00
 Name: ENSBTAP00000013021/1-142  Len:    215  Check:  951  Weight:  1.00

//


                          1                                                   50
ENSTTRP00000008775/1-165  ---------- ---------- -----KMCCR FCHRWQPPCA LGLLLLL--- 
bmy_11676T0/1-194         METEKDTEPD AGGSRTIGMA SPPPVHTAHA PATRWRRAVG CGSLILGPNR 
ENSP00000244766/1-142     ---------- ---------- ---------- ---------- MGLKLNG--- 
ENSBTAP00000013021/1-142  ---------- ---------- ---------- ---------- MGLKLNG--- 


                          51                                                 100
ENSTTRP00000008775/1-165  ---------- ---LPPLXXX XPLAATIAVP GRCDTIYQGF AECLIRLGD- 
bmy_11676T0/1-194         SFTFGPGAPR ARALVGTAGR AYLVQAVRAA GKCDAVFKGF SDCLLKLGDS 
ENSP00000244766/1-142     ---------R YISLILAVQI AYLVQAVRAA GKCDAVFKGF SDCLLKLGDS 
ENSBTAP00000013021/1-142  ---------R YISLILAVQI AYLVQAVRAA GKCDAVFKGF SDCLLKLGDS 


                          101                                                150
ENSTTRP00000008775/1-165  ------GMGR GGELESVCRS WNDFHTCASR VLLGCPEEAA AVWESLQQEA 
bmy_11676T0/1-194         MANYPQGLDD KTNIKTVCTY WEDFHSCTVT ALTDCQEGAK DMWDKLRKES 
ENSP00000244766/1-142     MANYPQGLDD KTNIKTVCTY WEDFHSCTVT ALTDCQEGAK DMWDKLRKES 
ENSBTAP00000013021/1-142  MANYPQGLDD KTNIKTVCTY WEDFHSCTVT ALTDCQEGAK DMWDKLRKES 


                          151                                                200
ENSTTRP00000008775/1-165  RRAPHPDNLH TLCGTPVRLQ EHGAGPETNQ ETLRATAPAP TRVPEPPLLA 
bmy_11676T0/1-194         KNLNIQGSLF ELCGS----- --GNG----- -------AAG SLLPAVPVLL 
ENSP00000244766/1-142     KNLNIQGSLF ELCGS----- --GNG----- -------AAG SLLPAFPVLL 
ENSBTAP00000013021/1-142  KNLNIQGSLF ELCGG----- --GNG----- -------AAG PLLPALPVLL 


                          201                                                250
ENSTTRP00000008775/1-165  AAL--ALACL LGPLA 
bmy_11676T0/1-194         VSLLAALATW LSF-- 
ENSP00000244766/1-142     VSLSAALATW LSF-- 
ENSBTAP00000013021/1-142  VSLSAALATW LSF--