KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:48:36 2014 Check: 00 .. Name: BACU007738/1-452 Len: 466 Check: 6042 Weight: 1.00 Name: ENSP00000376809/1-444 Len: 466 Check: 564 Weight: 1.00 Name: ENSBTAP00000013050/1-452 Len: 466 Check: 9384 Weight: 1.00 Name: bmy_17968T0/1-307 Len: 466 Check: 2935 Weight: 1.00 Name: ENSTTRP00000006713/1-436 Len: 466 Check: 4338 Weight: 1.00 // 1 50 BACU007738/1-452 ---MLSFLLP CLLAQVWLVP GSTPGPRSPE AQAGLE---- TVPTPRAQTE ENSP00000376809/1-444 MKVVPSLLLS VLLAQVWLVP GLAPSPQSPE TPAPQNQTSR VVQAPKEEEE ENSBTAP00000013050/1-452 MWAVLSLPLA CLLAQAWLVP GSTLASHSPE AQAGLE---- TLLTPMAQNK bmy_17968T0/1-307 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006713/1-436 MQAVLSLLLP CLLAQVWLVP GSTPGPRSPE AQDW------ TLPTPRADRE 51 100 BACU007738/1-452 TSEGGRAL-- -----QEDEG PPWLTADGQK LSGETSNLGF SLLRKISMRY ENSP00000376809/1-444 DEQEASEE-- ----KASEEE KAWLMASRQQ LAKETSNFGF SLLRKISMRH ENSBTAP00000013050/1-452 TSQTSERQWA PEEEEEREED SPWLLAEGQQ LSREASNLGF SLLRKISLKH bmy_17968T0/1-307 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006713/1-436 SEGGSCKR-- ---------T RAWLTADWQK LSGETSNLGF SLLRKISMRH 101 150 BACU007738/1-452 DGNVVFSPLG LAWAMAALTL GARGQSRAQL ETGLRLQALN QTLPAVNQTR ENSP00000376809/1-444 DGNMVFSPFG MSLAMTGLML GATGPTETQI KRGLHLQALK P-------TK ENSBTAP00000013050/1-452 DGNVVFSPLG LAWAMAALTL GARGHSRAQL E-DLLLQAWN QTWPVVNQTR bmy_17968T0/1-307 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006713/1-436 DGNVVFSPLG LAWAMAALTL GARGQSRAQL ETGLRLQALN QTLP----TR 151 200 BACU007738/1-452 PPRLPALFKQ LRESLSHNPE LGLTQGSFAF IHQDFDVKDT FLNFSKRYFD ENSP00000376809/1-444 PGLLPSLFKG LRETLSRNLE LGLTQGSFAF IHKDFDVKET FFNLSKRYFD ENSBTAP00000013050/1-452 PPRLPALFKQ LQESLSHNPE LGLAQGSFAF IHKDFDIRET FLNLSKRYFD bmy_17968T0/1-307 PPRLPALFKQ LRESLSHNPE LGLTQGSFAF IHEDFDVKET FLNFSKRYFD ENSTTRP00000006713/1-436 PGRLPALFKQ LRESLSHNPE LGLTQGSFAF IHEDFDVKET FLNFSKRYFD 201 250 BACU007738/1-452 TECVTINFRN ASQAKGLMNH HINKETQGKI PKLFDEINPD TKLILVDYIL ENSP00000376809/1-444 TECVPMNFRN ASQAKRLMNH YINKETRGKI PKLFDEINPE TKLILVDYIL ENSBTAP00000013050/1-452 MECVTVDFHN TSQAKRLINH YMNQETQGKL PKLFDEINPD TKLILVDYIL bmy_17968T0/1-307 TECVTMNFRN TSQAKGLMNH HINKETQGKI PKLFDEINPD TKLILVDYIL ENSTTRP00000006713/1-436 MECVTINFRN ASQAKGLMNH HINKETQGKI PKLFDEINPD TKLILVDYIL 251 300 BACU007738/1-452 LKGKWLTPFD PVLTETDTFY LDKYKAVKVP MMYRAGKFAS TFDKNFRCHV ENSP00000376809/1-444 FKGKWLTPFD PVFTEVDTFH LDKYKTIKVP MMYGAGKFAS TFDKNFRCHV ENSBTAP00000013050/1-452 FKGKWLIPFD PALTEMDTFY LDKYKEVKVP MMYRSGKFAS TFDKKFHCHV bmy_17968T0/1-307 LKGKWLTPFD PVLTETDTFY LDKYKAVKVP MMYRAGKFAS TFDKNFRCHV ENSTTRP00000006713/1-436 LKGKWLTPFD PVLTETDTFY LDKYKAVKVP MMYRAGKFAS TFDKNFRCHV 301 350 BACU007738/1-452 LKLPYRGNAT MLVVLMGRIG DHLALEDYLT TDLVDTWLRN MKTSIYPSAW ENSP00000376809/1-444 LKLPYQGNAT MLVVLMEKMG DHLALEDYLT TDLVETWLRN MKTRNMEVFF ENSBTAP00000013050/1-452 LKLPYRGNAS MLVVLVERIG DHLTLEDYLT TDLVDTWLRN MKTRKMEVFF bmy_17968T0/1-307 LKLPYRGNAT MLVVLMGRIG DHLALEDYLT TDLVDTWLRN MKTRKMEVFF ENSTTRP00000006713/1-436 LKLPYRGNAT MLVVLMGRIG DHLALEDYLT TDLVDTWLRN MKTRKMEVFF 351 400 BACU007738/1-452 LFHSLGQPLS SFSHMPGTGM HARCQPSRSS CSGDESTSGV QVGAREGLAK ENSP00000376809/1-444 PKFKLDQKYE MHELLRQMGI RRIFSPFADL SELSATGRNL QVS------- ENSBTAP00000013050/1-452 PKFKLDQKYK MHELLKQMGV QKIFLPWADL SDLMVTERNL KVS------- bmy_17968T0/1-307 PKFKLDQKYK MHELLKQMGI RRIFSPWADL SDLSVTERNL KVS------- ENSTTRP00000006713/1-436 PKFKLDQKYK MHELLKQMGI RRIFSPWADL SDLSVTERNL KVS------- 401 450 BACU007738/1-452 KVAVLQRAMI EVDEEGTEAV AGTLSEITAY SMPPIIKVDR PFHFIIYEET ENSP00000376809/1-444 --RVLQRTVI EVDERGTEAV AGILSEITAY SMPPVIKVDR PFHFMIYEET ENSBTAP00000013050/1-452 --KVLQRATI EVDEEGTEAM AGTLLEITAY YMPPIVKVDR PFLFIIYEET bmy_17968T0/1-307 --KVLQRAMI EVDEEGTEAV AGTLSEITAY SMPPIIKVDR PFHFIIYEET ENSTTRP00000006713/1-436 --KVLQRAMI EVDEEGTEAV AGTLSEITAY SMPPIIKVDR PFHFIIYEET 451 500 BACU007738/1-452 SRILLFLGRV VNPTLL ENSP00000376809/1-444 SGMLLFLGRV VNPTLL ENSBTAP00000013050/1-452 SRTVLFLGRV VDPTLL bmy_17968T0/1-307 SRILLFLGRV VNPTLL ENSTTRP00000006713/1-436 SRIVLFLGRV VNPTLL