KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:48:41 2014 Check: 00 .. Name: ENSP00000253458/1-1217 Len: 1254 Check: 4960 Weight: 1.00 Name: ENSBTAP00000013088/1-1204 Len: 1254 Check: 9626 Weight: 1.00 Name: ENSTTRP00000015174/1-1196 Len: 1254 Check: 675 Weight: 1.00 Name: bmy_06743T0/1-828 Len: 1254 Check: 6398 Weight: 1.00 Name: BACU004325/1-1042 Len: 1254 Check: 7095 Weight: 1.00 // 1 50 ENSP00000253458/1-1217 ---------- ---------- ---------- --MKGMSHEP KSPSLGMLST ENSBTAP00000013088/1-1204 ---------- ---------- ---------- --VSGMSHEP KSPSLGMLST ENSTTRP00000015174/1-1196 ---------- ---------- ---------- --MKGMSHEP KSPSLGMLST bmy_06743T0/1-828 ---------- ---------- ---------- ------RERE KERERELERQ BACU004325/1-1042 MPPAGTGPPG RADFALVPGP PALWVTSGSS FPVSGMSHEP KSPSLGMLST 51 100 ENSP00000253458/1-1217 ATRTTATVNP LTPSPLNGAL VPSGSPATSS ALSAQAAPSS SFAAALRKLA ENSBTAP00000013088/1-1204 ATRTTATVNP LTPSPLNGAL VPSGSPATSS ALSAQAAPSS SFAAALRKLA ENSTTRP00000015174/1-1196 ATRTTATVNP LTPSPLNGAL VPSGSPATSS ALSAQAAPSS SFAAALRKLA bmy_06743T0/1-828 REQRAREKEL LAAKALEPAF LP-------- ---------- --AAELHGLR BACU004325/1-1042 ATRTTATVNP LTPSPLNGAL VPSGSPATSS ALSAQAARSS SFAAALRKLA 101 150 ENSP00000253458/1-1217 KQAEEPRGSS LSSESSPVSS PATNHSSPAS TPKRVPMGPI IVPPGGHSVP ENSBTAP00000013088/1-1204 KQAEEPRGSS LSSESSPVSS PATNHSSPAS TPKRVPMGPI IVPPGGHSVP ENSTTRP00000015174/1-1196 KQAEEPRGSS LSSESSPVSS PATNHSSPAS TPKRVPMGPI IVPPGGHSVP bmy_06743T0/1-828 SHAAEERGKA AEQLT----- ---------- ---------- ---------- BACU004325/1-1042 KQAGEPRGSS LSSESSPVSS PATNHSSPAS TPKRVPMGPI IVPPGGHSVP 151 200 ENSP00000253458/1-1217 STPPVVTIAP TKTVNGVWRS ESR-QDAGSR SSSGGRERLI VEPPLPQEKA ENSBTAP00000013088/1-1204 STPPVVTIAP TKTVNGVWRS ESRQQDAGSR GSGGGRERLI VEPPLPQEKA ENSTTRP00000015174/1-1196 STPPVVTIAP TKTVNGVWRS ESR-QDAGSR GSGSGRERLI VEAPLPQEKA bmy_06743T0/1-828 ---------P TRA------- -EKLKDVG-- ---------- ---------- BACU004325/1-1042 STPPVVTIAP TKTVNGVWRS ESRQQDAGSR GSGSSRERLI VEPPLPQEKA 201 250 ENSP00000253458/1-1217 GGPAIPSHLL STPYPFGLSP SSVVQDSRFP PLNLQRPVHH VVPPSTVTED ENSBTAP00000013088/1-1204 GGPAIPSHLL SSPYPFGISP SSVVQDSRFP PLNLQRPVHH VVPPNTVTED ENSTTRP00000015174/1-1196 GGPAIPSHLL STPYPFGISP SSVVQDSRFP PLNLQRPVHH VVPPSTVTED bmy_06743T0/1-828 ---------- ---------- ---------- -LQAPKPVQH PLHPAAA--- BACU004325/1-1042 GGPAIPSHLL STPYPFGISP SSVVQDSRFP PLNLQRPVHH VVPPSTVTED 251 300 ENSP00000253458/1-1217 YLRSFRPYHT TDDLRMSSLP PLGLDPATAA AYYHPSYLAP HPFPHPAFRM ENSBTAP00000013088/1-1204 YLRSFRPYHT AEDLRVSSLP PLGLDPATAA AYYHPGYLAP HPFPHPAFRM ENSTTRP00000015174/1-1196 YLRSFRPYHT AEDLRVSSLP PLGLDPATAA AYYHPSYLAP HPFPHPAFRM bmy_06743T0/1-828 ------PHH- ---------- ---------- ---------- ---------- BACU004325/1-1042 YLRSFRPYHT AEDLRVSSLP PLGLDPATAA AYYHPSYLAP HPFPHPAFRM 301 350 ENSP00000253458/1-1217 DDSYCLSALR SPFYPIPTPG SLPPLHPSAM HLHLSGVRYP PELSHSSLAA ENSBTAP00000013088/1-1204 DDSYCLSALR SPFYPIPAPG SLPPLHPSAM HLHLSGVRYP PELSHSSLAA ENSTTRP00000015174/1-1196 DDSYCLSALR SPFYPIPTPG SLPPLHPSAM HLHLSGVRYP PELSHSSLAA bmy_06743T0/1-828 ---------- ------PVPG ---------- ---------- ---------- BACU004325/1-1042 DDSYCLSALR SPFYPIPTPG SLPPLHPSAM HLHLSGVRYP PELSHSSLAA 351 400 ENSP00000253458/1-1217 LHSERMSGLS AERLQMDEEL RRERERERER EREREADRER EKEREREREK ENSBTAP00000013088/1-1204 LHSERMSSLS AERLQVDEEL R----RERER EREREADRER EKEREREREK ENSTTRP00000015174/1-1196 LHSERMSSLS AERMQMDEEL R----RERER EREREADRER EKEREREREK bmy_06743T0/1-828 ---------- ---------- ---------- ---------- ---------- BACU004325/1-1042 LHSERMSSLS AERMQMDEEL R----RERER EREREADRER EKEREREKEL 401 450 ENSP00000253458/1-1217 EREQEKERER EKERERELER QREQRAREKE LLAAKALEPS FLPVAELHGL ENSBTAP00000013088/1-1204 EREREKELER EK--ERELER QREQRAREKE LLAAKALEPA FLPVAELHAL ENSTTRP00000015174/1-1196 EREREKELER ----ERELER QREQRAREKE LLAAKALEPA FLPVGELHGL bmy_06743T0/1-828 ---------- ---------- ---------- ---------- ---------- BACU004325/1-1042 EREREKER-- ----ERELER QREQRAREKE LLAAKALEPA FLPAAELHGL 451 500 ENSP00000253458/1-1217 RG-HATEERG KPSEQLTPTR AEKLKDAGLQ APKPVQHPLH PVPTPHHTVP ENSBTAP00000013088/1-1204 RS-HAAEERA KPSEQLTPTR AEKLKDAGLQ VPKPVQHPLH PAAAPPHAAP ENSTTRP00000015174/1-1196 RSLXXXXXXX XXXXXXXXXX XXKLKDAGLQ APKPVQHPLH PAAAPHHPVP bmy_06743T0/1-828 ---------- ---------- ---------- ---------- ---------- BACU004325/1-1042 RS-------- ---------- ---------- ---------- ---------- 501 550 ENSP00000253458/1-1217 SLISNHGIFS LPSSSAATAL LIQRTNEEEK WLARQRRLRQ EKEDRQSQVS ENSBTAP00000013088/1-1204 GLLAGHGLFS LPGSSAATAL LLQRTNEEEK WLARQRRLRQ EKEDRQSQVS ENSTTRP00000015174/1-1196 GLLSTHGLFS LPGSSAATAL LLQRTNEEEK WLARQRRLRQ EKEDRQSQVS bmy_06743T0/1-828 -LLSTHGLFS LPGSSAATAL LLQRTNEEEK WLARQRRLRQ EKEDRQSQVS BACU004325/1-1042 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000253458/1-1217 EFRQQVLEQH LDMGRPPVPA EAEHRPESTT RPGPNRHEPG GRDPPQHFGG ENSBTAP00000013088/1-1204 EFRQQVLEQQ LDLGRPPAPA DPEHRPES-A RPGPNRHEPG SREPPQHFGG ENSTTRP00000015174/1-1196 EFRQQVLEQH LDLGRPPAPA DAEHRPES-A -PGPNRHEPG GRDPPQHFGG bmy_06743T0/1-828 EFRQQVLEQH LDLGRPPAPA DAEHRPES-A RPGPNRHEPG GRDAPQHFGG BACU004325/1-1042 ---------- ---------- ---HAAEE-R GPGPNRHEPG GRDAPQHFGG 601 650 ENSP00000253458/1-1217 PPPLISPKPQ LHAAPTALWN PVSLMDNTLE TRRA-ESHSL HSHPAAFEPS ENSBTAP00000013088/1-1204 PPPLISPKPQ HHSMPTALWN PVSLMDSSLE PRRAPEGHPP HGHPAPFEPS ENSTTRP00000015174/1-1196 PPPLISPKPQ HHSVPTALWN PVSLMDSTLE TRRAPEGHPL HGHPAPFEPS bmy_06743T0/1-828 PPPLISPKPQ HHSVPTALWN PVSLMDSTLE TRRAPEGHPL HGHPAPFEPS BACU004325/1-1042 PPPLISPKPQ HHSVPTALWN PVSLMDSTLE TRRAPEGHPL HGHPAPFEPS 651 700 ENSP00000253458/1-1217 RQAAVPLVKV ERVFCPEKAE EGPRKREPAP LDKYQPPPPP PREGGSLEHQ ENSBTAP00000013088/1-1204 RPAAVPLVKV ERVYCPEKAE EGPRKREATP LDKY--PPPP PREPGALEPQ ENSTTRP00000015174/1-1196 RQAAVPLVKV ERVYCPEKAE EGPRKREAAP LDKY---QPP AREAGGLEQQ bmy_06743T0/1-828 RQAAVPLVKV ERVYCPEKAE EGPRKREAAP LDKY---QPP PREAGGLEQQ BACU004325/1-1042 RQAAVPLVKV ERVYCPE--- ---------- ---------- ---------- 701 750 ENSP00000253458/1-1217 PFLPGPGPFL AELEKSTQTI LGQQRASLPQ AATFGELSGP LKPGSPYRPP ENSBTAP00000013088/1-1204 AFPPGPGPFL AELEPAAPTV LGQPRASLAP PAAFGEPPGP LKPGSPYRPL ENSTTRP00000015174/1-1196 AFPPAPAHFL AELEPSTQTV LGQPRAPLAP PAPFGETPGP LKPGSPYRPP bmy_06743T0/1-828 AFPPAPAHFL AELEPSTQTV LGQPRASLAP PAPFGEPPGP LKPGSPYRPP BACU004325/1-1042 ---------- ---------- ---------- ---------- -KPGSPYRPP 751 800 ENSP00000253458/1-1217 VPRAPDPAYI YDEFLQQRRR LVSKLDLEER RRREAQEKGY YYDLDDSYDE ENSBTAP00000013088/1-1204 PPRGPDPAYV YDEFLQQRRR LVSKLDLEER RRREAQEKGY YYDLDDSYDE ENSTTRP00000015174/1-1196 APRGPDPTYV YDEFLQQRRR LVSKLDLEER RRREAQEKGY YYDLDDSYDE bmy_06743T0/1-828 APRGPDPTYV YDEFLQQRRR LVSKLDLEER RRREAQEKGY YYDLDDSYDE BACU004325/1-1042 VPRGPDPTYV YDEFLQQRRR LVSKLDLEER RRREAQEKGY YYDLDDSYDE 801 850 ENSP00000253458/1-1217 SDEEEVRAHL RCVAEQPPLK LDTSSEKLEF LQLFGLTTQQ QKEELVAQKR ENSBTAP00000013088/1-1204 SDEEEVRAHL RCVAEQPPLK LDTSSEKLEF LQLFGLTTQQ QKEDLLTQKR ENSTTRP00000015174/1-1196 SDEEEVRAHL RCVAEQPSLK LDTSSEKLEF LQLFGLTTQQ QKEELLTQKR bmy_06743T0/1-828 SDEEEVRAHL RCVAEQPPLK LDTSSEKLEF LQLFGLTTQQ QKEELLTQKR BACU004325/1-1042 SDEEEVRAHL RCVAEQPPLK LDTSSEKLEF LQLFGLTTQQ QKEELLTQKR 851 900 ENSP00000253458/1-1217 RKRRRMLRER SPSPPTIQSK RQTPSPRLAL STRYSPDEMN NSPNFEEKKK ENSBTAP00000013088/1-1204 RKRRRMLRER SPSPPTARSK RQTPSPRLAL STRYSPDDMN SSPNFEEKKK ENSTTRP00000015174/1-1196 RKRRRMLRER SPSPPTVQSK RQTPSPRLAL STRYSPDEMN SSPNFEEKRK bmy_06743T0/1-828 RKRRRMLRER SPSPPTVQSK RQTPSPRLAL STRYSPDEMN SSPNFEEKRK BACU004325/1-1042 RKRRRMLRER SPSPPTVQSK RQTPSPRLAL STRYSPDEMN SSPNFEEKRK 901 950 ENSP00000253458/1-1217 FLTIFNLTHI SAEKRKDKER LVEMLRAMKQ KALSAAVADS LTNSPRDSPA ENSBTAP00000013088/1-1204 FLTIFNLTHI SAEKRKDKER LVELLQAMKQ KALSAAVADP LRTSPRDSPA ENSTTRP00000015174/1-1196 FLTIFNLTHI STEKRKDKER LVELLQAMKQ RALSAAVADP LRNSPRDSPA bmy_06743T0/1-828 FLTIFNLTHI STEKRKDKER LVELLQAMKQ KALSAAVADP LRNSPRDSPA BACU004325/1-1042 FLTIFNLTHI STEKRKDKER LVALLQAVKQ KALSAAAADP LRNSPRDSPA 951 1000 ENSP00000253458/1-1217 VSLSEPATQQ ASLDVEKPVG VAASLSDIPK AAEPGKLEQV RPQELSRVQE ENSBTAP00000013088/1-1204 VSVSEPTTQQ ASLDTEKPVG IAASLSDVPK ATEPGRLEQL RPPE--RIQE ENSTTRP00000015174/1-1196 GSLSEPATQQ ASLDTEKPVG ITASLSDTQK ATEPGRLEQL RPQE--RVPE bmy_06743T0/1-828 GSLSEPATQQ ASLDTEKPVG ITASSSDIQK ATEPGRLEQL RPQE--RVQE BACU004325/1-1042 GSLSEPATQQ ASLDTEKPVG ITASLSDVQK ATEPGRLEQL RPQE--RVQE 1001 1050 ENSP00000253458/1-1217 LAPASGEKAR LSEAPGGKKS LSMLHYIRGA APKDIPVPLS HSTNGKSKPW ENSBTAP00000013088/1-1204 PAPTSGEKAR PSEAPGGKKS LSMLHYVRGP APKDIPVPLS HSINGKSKPW ENSTTRP00000015174/1-1196 PAPASGEKAR PSETPGGRKS LSMLHYIRGP TPKDIPVPLS HGINGKSKPW bmy_06743T0/1-828 PAPASGEKAR PSETPGGKKS LSMLHYIRGP APKDIPVPLS HGINGKSKPW BACU004325/1-1042 PAPASGEKAR PSETPGGKKS LSMLHYIRGP APKDIPVPLS HGINGKSKPW 1051 1100 ENSP00000253458/1-1217 EPFVAEEFAH QFHESVLQST QKALQKHKGS VAVLSAEQNH KVDTSVHYNI ENSBTAP00000013088/1-1204 EPFVAEEFAH QFHESVLQST QKALQKHKGS AAVLSAEQNH KVDASVHYNL ENSTTRP00000015174/1-1196 EPFMAEEFAH QFHESVLQST QKALQKHRGS AAVLCAEQNH SIDTSVHYNI bmy_06743T0/1-828 EPFVAEEFAH QFHESVLH-- ---------- AGVLSAEQNH SVDASVHYHI BACU004325/1-1042 EPFVAEEFAH QFHESVLQST QKALQKHRGS AAVLSAEQNH NVDASVHYNI 1101 1150 ENSP00000253458/1-1217 PELQSSSRAP PPQHNGQQEP PTARKGPPTQ ELDRDSEEEE EE--DDEDGE ENSBTAP00000013088/1-1204 PELQSSSRLP PPQHNGQQEP PASRKGPLAQ EMDPDSEE-- ----EDDGED ENSTTRP00000015174/1-1196 PELRSSSRLP LPQRDGQQEP PAGRKGPLAQ EVDPDSEEE- ----EDDDRD bmy_06743T0/1-828 PELRPSSRRP LPQRDGQQEP PAGRKGPLAQ EMDPDSEEEE EEEDDDDGEE BACU004325/1-1042 PELRSSSRLP LPQRDGQQEP PAGRKGPLAQ EMDPDSEEEE ----DDDGEE 1151 1200 ENSP00000253458/1-1217 DEEEVPKRKW QGIEAVFEAY QEHIEEQNLE RQVLQTQCRR LEARHYSLSL ENSBTAP00000013088/1-1204 DDEDPPRRKW QGIEAILEAY QEHVEEQDLE RQVLQAQCRR LEAQHYSLSL ENSTTRP00000015174/1-1196 DDE--PERKW H-IEAIFV-Y -EHVDEQNLE RQVLQTQCRR LEAQHYSLSL bmy_06743T0/1-828 DDEDPPRRKW HGIEAIFEAY QEHVEEQNLE RQVLQTQCRR LEAQHYSLSL BACU004325/1-1042 DDEDPPRRKW HGIEAIFEAY QEHVEEQNLE RQVLQTQCRR LEAQHYSLSL 1201 1250 ENSP00000253458/1-1217 TAEQLSHSVA ELRSQKQKMV SERERLQAEL DHLRKCLALP AMHWPRGYLK ENSBTAP00000013088/1-1204 TAEQLSHSMA ELRSQKQKIV SERERLQAEL DHLRKCLALP AMHWPRGYFK ENSTTRP00000015174/1-1196 TAEQLSHSMA ELRSQKQKIV SERERLQAEL DHLRKCLALP AMHWPRGYFK bmy_06743T0/1-828 TAEQLSHSMA ELRSQKQKIV SERERLQAEL DHLRKCLALP AMHWPRGYFK BACU004325/1-1042 TAEQLSHSMA ELRSQKQKIV SERERLQAEL DHLRKCLALP AMHWPRGYFK 1251 1300 ENSP00000253458/1-1217 GYPR ENSBTAP00000013088/1-1204 GYPR ENSTTRP00000015174/1-1196 GYPR bmy_06743T0/1-828 GYPR BACU004325/1-1042 GYPR