KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:48:44 2014 Check: 00 .. Name: ENSBTAP00000013117/1-1106 Len: 1106 Check: 1858 Weight: 1.00 Name: bmy_11621T0/1-960 Len: 1106 Check: 2974 Weight: 1.00 Name: ENSP00000409637/1-1001 Len: 1106 Check: 4497 Weight: 1.00 Name: BACU001558/1-1001 Len: 1106 Check: 4570 Weight: 1.00 Name: ENSTTRP00000002001/1-1001 Len: 1106 Check: 5520 Weight: 1.00 // 1 50 ENSBTAP00000013117/1-1106 XPSSPGPVLA AKGALRAGAG EGGGGGRPGP GRARCDSAGV SNGDCSLGAP bmy_11621T0/1-960 MPLELCEKAV ADKWLQSGSS FRGR------ ---------- ---------- ENSP00000409637/1-1001 ---------- ---------- ---------- ---------- ---------- BACU001558/1-1001 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002001/1-1001 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000013117/1-1106 GGEARVGPAL AAAPGPAACP LPRDSKPGGL PRRSSIIKDG TKQKRERKKT bmy_11621T0/1-960 ---------- -----QRWCQ KELDVYDFCT TGKYVFLKDG TKQKRERKKT ENSP00000409637/1-1001 ---------- ---------- ---------- ---------- ---------- BACU001558/1-1001 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002001/1-1001 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000013117/1-1106 VSFSSMPTEK KISSASDCIN AMVEGSELKK VRSNSRIYHR YFLLDADMQS bmy_11621T0/1-960 VSFSSMPTEK KISSASDCIN SMVEGSELKK VRSNSRIYHR YFLLDADMQS ENSP00000409637/1-1001 -----MPTEK KISSASDCIN SMVEGSELKK VRSNSRIYHR YFLLDADMQS BACU001558/1-1001 -----MPTEK KISSASDCIN SMVEGSELKK VRSNSRIYHR YFLLDADMQS ENSTTRP00000002001/1-1001 -----MPTEK KISSASDCIN SMVEGSELKK VRSNSRIYHR YFLLDADMQS 151 200 ENSBTAP00000013117/1-1106 LRWEPSKKDS EKAKIDIKSI KEVRTGKNTD IFRSNGVSDQ ISEDCAFSVI bmy_11621T0/1-960 LRWEPSKKDS EKAKIDIKSI KEVRTGKNTD IFRSNGISDQ ISEDCAFSVI ENSP00000409637/1-1001 LRWEPSKKDS EKAKIDIKSI KEVRTGKNTD IFRSNGISDQ ISEDCAFSVI BACU001558/1-1001 LRWEPSKKDS EKAKIDIKSI KEVRTGKNTD IFRSNGISDQ ISEDCAFSVI ENSTTRP00000002001/1-1001 LRWEPSKKDS EKAKIDIKSI KEVRTGKNTD IFRSNGISDQ ISEDCAFSVI 201 250 ENSBTAP00000013117/1-1106 YGENYESLDL VANSADVANI WVTGLRYLIS YGKHTLDMLE SSQDNMRTSW bmy_11621T0/1-960 YGENYESLDL VANSADVANI WVTGLRYLIS YGKHTLDMLE SSQDNMRTSW ENSP00000409637/1-1001 YGENYESLDL VANSADVANI WVTGLRYLIS YGKHTLDMLE SSQDNMRTSW BACU001558/1-1001 YGENYESLDL VANSADVANI WVTGLRYLIS YGKHTLDMLE SSQDNMRTSW ENSTTRP00000002001/1-1001 YGENYESLDL VANSADVANI WVTGLRYLIS YGKHTLDMLE SSQDNMRTSW 251 300 ENSBTAP00000013117/1-1106 VSQMFSEIDV DDLGHITLCS AVQCIRNLNP GLKTSKIELK FKELHKSRDK bmy_11621T0/1-960 VSQMFSEIDV DNLGHITLCN AVQCIRNLNP GLKTSKIELK FKELHKSKDK ENSP00000409637/1-1001 VSQMFSEIDV DNLGHITLCN AVQCIRNLNP GLKTSKIELK FKELHKSKDK BACU001558/1-1001 VSQMFSEIDV DNLGHITLCN AVQCIRNLNP GLKTSKIELK FKELHKSKDK ENSTTRP00000002001/1-1001 VSQMFSEIDV DNLGHITLCS AVQCIRNLNP GLKTSKIELK FKELHKSKDK 301 350 ENSBTAP00000013117/1-1106 TGTDVIKEEF VEVFHELCTR PEIYFLLVQF SSNKEFLDTK DLMMFLEAEQ bmy_11621T0/1-960 AGTEVTKEEF VEVFHELCTR PEIYFLLVQF SSNKEFLDTK DLMMFLEAEQ ENSP00000409637/1-1001 AGTEVTKEEF IEVFHELCTR PEIYFLLVQF SSNKEFLDTK DLMMFLEAEQ BACU001558/1-1001 AGTEVTKEEF VEVFHELCTR PEIYFLLVQF SSNKEFLDTK DLMMFLEAEQ ENSTTRP00000002001/1-1001 AGTEVTKEEF VEVFHELCTR PEIYFLLVQF SSNKEFLDTK DLMMFLEAEQ 351 400 ENSBTAP00000013117/1-1106 GVAHINEEIS LEIIHKYEPS KEGQEKGWLS IDGFTNYLMS PDCYIFDPEH bmy_11621T0/1-960 GVAHINEEIS LEIIHKYEPS KEGQEKGWLS IDGFTNYLVS SDCYIFDPEH ENSP00000409637/1-1001 GVAHINEEIS LEIIHKYEPS KEGQEKGWLS IDGFTNYLMS PDCYIFDPEH BACU001558/1-1001 GVAHINEEIS LEIIHKYEPS KEGQEKGWLS IDGFTNYLVS SDCYIFDPEH ENSTTRP00000002001/1-1001 GVAHINEEIS LEIIHKYEPS KEGQEKGWLS IDGFTNYLVS SDCYIFDPEH 401 450 ENSBTAP00000013117/1-1106 KKVCQDMKQP LSHYFINSSH NTYLIEDQFR GPSDITGYIR ALKMGCRSVE bmy_11621T0/1-960 KKVCQDMKQP LSHYFINSSH NTYLIEDQFR GPSDITGYIR ALKMGCRSVE ENSP00000409637/1-1001 KKVCQDMKQP LSHYFINSSH NTYLIEDQFR GPSDITGYIR ALKMGCRSVE BACU001558/1-1001 KKVCQDMKQP LSHYFINSSH NTYLIEDQFR GPSDITGYIR ALKMGCRSVE ENSTTRP00000002001/1-1001 KKVCQDMKQP LSHYFINSSH NTYLIEDQFR GPSDITGYIR ALKMGCRSVE 451 500 ENSBTAP00000013117/1-1106 LDVWDGPDNE PVIYTGHTMT SQIVFRSVID IINKYAFFAS EYPLILCLEN bmy_11621T0/1-960 LDVWDGPDNE PVIYTGHTMT SQIVFRSVID IINKYAFFAS EYPLILCLEN ENSP00000409637/1-1001 LDVWDGPDNE PVIYTGHTMT SQIVFRSVID IINKYAFFAS EYPLILCLEN BACU001558/1-1001 LDVWDGPDNE PVIYTGHTMT SQIVFRSVID IINKYAFFAS EYPLILCLEN ENSTTRP00000002001/1-1001 LDVWDGPDNE PVIYTGHTMT SQIVFRSVID IINKYAFFAS EYPLILCLEN 501 550 ENSBTAP00000013117/1-1106 HCSIKQQKVM VQHMKKILGD KLYTTSPNVE ESYLPSPDVL KGKILVKAKK bmy_11621T0/1-960 HCSIKQQKVM VQHMKKILGD RLYTTSPSAE ESYLPSPDVL KGKILIKAKK ENSP00000409637/1-1001 HCSIKQQKVM VQHMKKLLGD KLYTTSPNVE ESYLPSPDVL KGKILIKAKK BACU001558/1-1001 HCSVKQQKVM VQHMKKILGD KLYTTSPSAE ESYLPSPDAL KGKILIKAKK ENSTTRP00000002001/1-1001 HCSIKQQKVM VQHMKKILGD KLYTTSPSAE ESYLPSPDVL KGKILIKAKK 551 600 ENSBTAP00000013117/1-1106 LSSSCSGVEG DVTDEDEGAE MSQRMGKENT EPANHVPAKR FQLCKELSEL bmy_11621T0/1-960 LSSNCSGVEG DVTDEDEGAE MSQRMGKENA DQPNHVPTKR FQLCKELSEL ENSP00000409637/1-1001 LSSNCSGVEG DVTDEDEGAE MSQRMGKENM EQPNNVPVKR FQLCKELSEL BACU001558/1-1001 LSSNCSGVEG DVTDEDEGAE MSQRMGKENA DQPNHVPAKR FQLCKELSEL ENSTTRP00000002001/1-1001 LSSNCSGVEG DVTDEDEGAE MSQRMGKENA ELPNHVPAKR FQLCKELSEL 601 650 ENSBTAP00000013117/1-1106 VSICKSVQFK EFQASFQAQK YWEVCSFNEV LASKYANENP GDFVNYNKRF bmy_11621T0/1-960 VSICKSVQFK EFQVSFQVQK YWEVCSFNEV LASKYANENA GDFVNYNKRF ENSP00000409637/1-1001 VSICKSVQFK EFQVSFQVQK YWEVCSFNEV LASKYANENP GDFVNYNKRF BACU001558/1-1001 VSICKSVQFK EFQVSFQVQK YWEVCSFNEV LASKYANENA GDFVNYNKRF ENSTTRP00000002001/1-1001 VSICKSVQFK EFQVSFQVQK YWEVCSFNEV LASKYANENA GDFVNYNKRF 651 700 ENSBTAP00000013117/1-1106 LARVFPSPMR IDSSNMNPQD FWKCGCQIVA MNFQTPGLMM DLNVGWFRQN bmy_11621T0/1-960 LARVFPSPMR IDSSNMNPQD FWKCGCQIVA MNFQTPGLMM DLNIGWFRQN ENSP00000409637/1-1001 LARVFPSPMR IDSSNMNPQD FWKCGCQIVA MNFQTPGLMM DLNIGWFRQN BACU001558/1-1001 LARVFPSPMR IDSSNMNPQD FWKCGCQIVA MNFQTPGLMM DLNIGWFRQN ENSTTRP00000002001/1-1001 LARVFPSPMR IDSSNMNPQD FWKCGCQIVA MNFQTPGLMM DLNIGWFRQN 701 750 ENSBTAP00000013117/1-1106 GNCGYVLRPA IMREEVSFFS ANTKDSVPGV SPQLLHIKVI SGQNFPKPKG bmy_11621T0/1-960 GNCGYVLRPA IMREEVSFFS ANTKDSVPGV SPQLLHIKII SGQNFPKPKG ENSP00000409637/1-1001 GNCGYVLRPA IMREEVSFFS ANTKDSVPGV SPQLLHIKII SGQNFPKPKG BACU001558/1-1001 GNCGYVLRPA IMREEVSFFS ANTKDSVPGV SPQLLHIKII SGQNFPKPKG ENSTTRP00000002001/1-1001 GNCGYVLRPA IMREEVSFFS ANTKDSVPGV SPQLLHIKII SGQNFPKPKG 751 800 ENSBTAP00000013117/1-1106 SGAKGDVVDP YVYVEIHGIP ADCAEQRTRT VHQNGDAPIF DESFEFQVNL bmy_11621T0/1-960 SGAKGDVVDP YVYVEIHGIP ADCAEQRTKT VHQNGDAPIF DESFEFQINL ENSP00000409637/1-1001 SGAKGDVVDP YVYVEIHGIP ADCAEQRTKT VHQNGDAPIF DESFEFQINL BACU001558/1-1001 SGAKGDVVDP YVYVEIHGIP ADCAEQRTKT VHQNGDAPIF DESFEFQINL ENSTTRP00000002001/1-1001 SGAKGDVVDP YVYVEIHGIP ADCAEQRTKT VHQNGDAPIF DESFEFQINL 801 850 ENSBTAP00000013117/1-1106 PELAMVRFVV LDDDYIGDEF IGQYTIPFEC LQTGYRHVQL QSLTGEVLAH bmy_11621T0/1-960 PELAMVRFVV LDDDYIGDEF IGQYTIPFEC LQTGYRHVPL QSLTGEVLAH ENSP00000409637/1-1001 PELAMVRFVV LDDDYIGDEF IGQYTIPFEC LQTGYRHVPL QSLTGEVLAH BACU001558/1-1001 PELAMVRFVV LDDDYIGDEF IGQYTIPFEC LQTGYRHVPL QSLTGEVLAH ENSTTRP00000002001/1-1001 PELAMVRFVV LDDDYIGDEF IGQYTIPFEC LQTGYRHVPL QSLTGEVLAH 851 900 ENSBTAP00000013117/1-1106 ASLFVHVAIT NRRGGGKPHK RGLSVRKGKK SREYASLRTL WIKTVDEVFK bmy_11621T0/1-960 ASLFVHVAIT NRRGGGKPHK RGLSVRKGKK SREYASLRTL WIKTVDEVFK ENSP00000409637/1-1001 ASLFVHVAIT NRRGGGKPHK RGLSVRKGKK SREYASLRTL WIKTVDEVFK BACU001558/1-1001 ASLFVHVAIT NRRGGGKPHK RGLSVRKGKK SREYASLRTL WIKTVDEVFK ENSTTRP00000002001/1-1001 ASLFVHVAIT NRRGGGKPHK RGLSVRKGKK SREYASLRTL WIKTVDEVFK 901 950 ENSBTAP00000013117/1-1106 NAQPPIRDAT DLRENMQNAV VSFKELCGLS SVANLMQCML AVSPRFLGPD bmy_11621T0/1-960 NAQPPIRDAT DLRENMQNAV VSFKELCGLS SVANLMQCML AVSPRFLGPD ENSP00000409637/1-1001 NAQPPIRDAT DLRENMQNAV VSFKELCGLS SVANLMQCML AVSPRFLGPD BACU001558/1-1001 NAQPPIRDAT DLRENMQNAV VSFKELCGLS SVANLMQCML AVSPRFLGPD ENSTTRP00000002001/1-1001 NAQSPIRDAT DLRENMQNAV VSFKELCGLS SVANLMQCML AVSPRFLGPD 951 1000 ENSBTAP00000013117/1-1106 NTPLVVLNLS EQYPTMELQG IVPEVLKKIV TTYDMMIQSL KALIENADAV bmy_11621T0/1-960 NTPLVVLNLS EQYPTMELQG IVPEVLKKIV TTYDMVSGSL ---------- ENSP00000409637/1-1001 NTPLVVLNLS EQYPTMELQG IVPEVLKKIV TTYDMMIQSL KALIENADAV BACU001558/1-1001 NTPLVVLNLS EQYPTMELQG IVPEVLKKIV TTYDMMIQSL KALIENADAV ENSTTRP00000002001/1-1001 NTPLVVLNLS EQYPTMELQG IVPEVLKKIV TTYDMMIQSL KALIENADAV 1001 1050 ENSBTAP00000013117/1-1106 YEKIVHCQKA AMEFHEHLQS IGTKEGLKER KLQKAVESFT WNITILKGQA bmy_11621T0/1-960 ---------- ------HFY- ---------- ---------- ---------- ENSP00000409637/1-1001 YEKIVHCQKA AMEFHEHLHS IGTKEGLKER KLQKAVESFT WNITILKGQA BACU001558/1-1001 YEKIVHCQKA AMEFHEHLHS IGTKEGLKER KLQKAVESFT WNITILKGQA ENSTTRP00000002001/1-1001 YEKIVHCQKA AMEFHEHLHS IGTKEGLKER KLQKAVESFT WNITILKGQA 1051 1100 ENSBTAP00000013117/1-1106 DLLKYAKNET VENLKQIHYA AVSCGLNKPG TENADVQKPR RSLEVIPEKA bmy_11621T0/1-960 ---------- ---------- ---------G AQGREVS--- ---------- ENSP00000409637/1-1001 DLLKYAKNET LENLKQIHFA AVSCGLNKPG TENADVQKPR RSLEVIPEKA BACU001558/1-1001 DLLKYAKNET VENLKQIHYA AVSCGLNKPG TENTDVQKPR RSLEVIPEKA ENSTTRP00000002001/1-1001 DLLKYAKNET VENLKQIHYA AVSCGLNKPG TENTDVQKPR RSLEVIPEKA 1101 1150 ENSBTAP00000013117/1-1106 NDETGE bmy_11621T0/1-960 ------ ENSP00000409637/1-1001 NDETGE BACU001558/1-1001 NDDTGE ENSTTRP00000002001/1-1001 NDETGE