KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:48:45 2014 Check: 00 .. Name: ENSP00000323889/1-630 Len: 1212 Check: 8370 Weight: 1.00 Name: ENSBTAP00000013121/1-631 Len: 1212 Check: 2715 Weight: 1.00 Name: ENSTTRP00000007665/1-475 Len: 1212 Check: 15 Weight: 1.00 Name: bmy_11959T0/1-555 Len: 1212 Check: 5043 Weight: 1.00 Name: BACU006275/1-1210 Len: 1212 Check: 7315 Weight: 1.00 // 1 50 ENSP00000323889/1-630 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013121/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006275/1-1210 MAASETVRLR LQFDYPPPAT PHCTSFWLLI DLNRCRVVTD LISLIRQRFG 51 100 ENSP00000323889/1-630 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013121/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006275/1-1210 FSSGALLGLY LEGGLLPPTE SARLVRDNDC LRVKLEERGV AESPVTVSNG 101 150 ENSP00000323889/1-630 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013121/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006275/1-1210 DSTRLLPRKA KKRAFKLEED EETELDYKNS KKHWKRHENN NSEKTLDLEP 151 200 ENSP00000323889/1-630 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013121/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006275/1-1210 KAVTDQSVSK KNKRKNKATC GVVDADGGET KRKSPKKKEK CEYKKQAKTP 201 250 ENSP00000323889/1-630 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013121/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006275/1-1210 KSSKAQSVKE WTILKCSPPK GPPARNSLVK AKRKGHTGIH TKDSPDSSSE 251 300 ENSP00000323889/1-630 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013121/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006275/1-1210 SESYHESTSD GLSNVILEVR HSPEEILTEV SKEGSSMKTT TADKVAAKTG 301 350 ENSP00000323889/1-630 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013121/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006275/1-1210 FPSTRIKGKT SRTSSSSSDS SSESDDQCVM SKSTPVCTAD FLKTVGLFAG 351 400 ENSP00000323889/1-630 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013121/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006275/1-1210 KRCPGPSSQV PNAAGWKQSD SNGGRQALGP PPNVTLPITL GRGWSRGEDL 401 450 ENSP00000323889/1-630 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013121/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006275/1-1210 LSWKGARGRG MRGRGRGRGH AVPCVLNRNA DYQKQQQLNE MVTNSSTVIQ 451 500 ENSP00000323889/1-630 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013121/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006275/1-1210 NPIETHKKDY SLLPLLAAAP QVGEKIAFKL LELTSDYSPD VSDYKEGKIL 501 550 ENSP00000323889/1-630 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013121/1-631 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 ---------- ---------- ---------- ---------- ---------- BACU006275/1-1210 SHNPETQQVD IEILSSLPAV KEPGKFDLVY HNENGAEVVE YAVTQEKRFR 551 600 ENSP00000323889/1-630 ---------- ---------- -------MAE LCPLAEELSC SICLEPFKEP ENSBTAP00000013121/1-631 ---------- ---------- -------MAE LCPLAEELSC SICLEPFKGP ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 ---------- ---------- -------MAE LCPLAEELSC SICLEPFKGP BACU006275/1-1210 FLGGFRAIVQ QKRQRFQRVP SGPPRSAMAE LCPLAEELSC SICLEPFKEP 601 650 ENSP00000323889/1-630 VTTPCGHNFC GSCLNETWAV QGSPYLCPQC RAVYQARPQL HKNTVLCNVV ENSBTAP00000013121/1-631 VTTPCGHNFC GACLDETWAV QGAPYLCPQC RTGFAARPQL RKNTVLCAVV ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 VTTPCGHNFC GSCLDQTWAV QDPPYLCPQC RTGFQTRPQL HKNTVLCAVV BACU006275/1-1210 VTTPCGHNFC WLCLDQTWAV QDPQYLCPQC RTGFQTRPQL HKNTVLCAVV 651 700 ENSP00000323889/1-630 EQFLQADLAR EPP-ADVWTP PARASAPSPN AQVACDHCLK EAAVKTCLVC ENSBTAP00000013121/1-631 EQFLQAEQAR PALAADDWTP PTRAAAPSAA GQVACDHCLQ ATAVKTCLVC ENSTTRP00000007665/1-475 ---------- ---------- ---------- ---------- ---------- bmy_11959T0/1-555 EQFLQAEQAR PEV-PDDWMP PTRAAAPNPA GQVACDHCLQ ATAVKTCLVC BACU006275/1-1210 EQFLQAEQAR PEL-PDDWTP PTRAAAPSPA GQVACDHCLQ ATAVKTCLVC 701 750 ENSP00000323889/1-630 MASFCQEHLQ PHFDSPAFQD HPLQPPVRDL LRRKCSQHNR LREFFCPEHS ENSBTAP00000013121/1-631 MASFCQEHLR PHLDSPAFQD HPLQPPVRDL MRRKCARHNR LRDFFCPQHS ENSTTRP00000007665/1-475 ---------- ---------- ---------- ----CPQHNR LRDVIC-EHG bmy_11959T0/1-555 MASFCQEHLR PHLDSPAFRD HPLQSPIREL MRRKCPQHNR LRDFFCPEHG BACU006275/1-1210 MASFCQEHLR PHLDSPAFRD HPLQPPIREL MRRKCPQHNR LRDFFCPEHG 751 800 ENSP00000323889/1-630 ECICHICLVE HKTCSPASLS QASADLEATL RHKLTVMYSQ INGASRALDD ENSBTAP00000013121/1-631 ECICHVCVVD HKTCSPAPLN EASTDLENKL RQKLTVMYGQ INGASRALED ENSTTRP00000007665/1-475 ECICHICVVE HKTCS-APLS QASTDLENKL RHKLTVMYSQ INGASRALED bmy_11959T0/1-555 ECICHICVVE HKTCSPAPLS QASTDLENKL RHKLTVTYSQ INGASRALED BACU006275/1-1210 ECICHICVVE HKTCSPAPLS QASADLENKL RHKLTLTYSQ INGASRALED 801 850 ENSP00000323889/1-630 VRNRQQDVRM TANRKVEQLQ QEYTEMKALL DASETTSTRK IKEEEKRVNS ENSBTAP00000013121/1-631 VRARQQEVQD AAHRKLDQLR QEYLEMKALI DASEASTTRK IKEEEKRVTS ENSTTRP00000007665/1-475 VRARQQDVRE VAHRKMDQLR QEYMEMKALI DASEANSTRK IKEEEKRVNS bmy_11959T0/1-555 VRARQQDVR- ---------- ---------- ---------- ---------- BACU006275/1-1210 VRARQQDVRE VAHRKMDQLR QEYLEMKALI DASEASSTRK IKEEEKRVNS 851 900 ENSP00000323889/1-630 KFDTIYQILL KKKSEIQTLK EEIEQSLTKR DEFEFLEKAS KLRGISTKPV ENSBTAP00000013121/1-631 KFDNIYQIIL KKRSEIQTLK EEVELALTKG DEFEFLEKAT KLQGITTKPV ENSTTRP00000007665/1-475 KFDNIYQILL KKKSEIQT-K EEIELALTKG DEYEFLEKAA KLQGITTKPV bmy_11959T0/1-555 ---------- ---------- ---------- -------KAA KLQGITTKPV BACU006275/1-1210 KFDSIYQILL KKKSEIQTLK EEIELALTKG DEYEFLEKAA KLQGITTKPV 901 950 ENSP00000323889/1-630 YIPEVELNHK LIKGIHQSTI DLKNELKQCI GRLQEPTPS- ---SGDPGEH ENSBTAP00000013121/1-631 FVPKVELNHE LIKEIYQGTS DLKNELKRCL RQPQDKKPEE LTIPGDAGGP ENSTTRP00000007665/1-475 YVPRVELNHE LIKGVCQGTS ELKNELKQYL KQLQDKKPEE LIIPXXXXXX bmy_11959T0/1-555 YVPKVELNHE LIKGVCQGTS ELKNELKQYL KQPQDKKPEE LIIPGGPGGH BACU006275/1-1210 YVPKVELNHE LLKGVCQGTS ELKNELKQYL KQLQDKKPEE LIIPGGPGGH 951 1000 ENSP00000323889/1-630 DPASTHKSTR PVKKVSKEEK KSKKPPPVPA LPSKLPTFGA PEQLVDLKQA ENSBTAP00000013121/1-631 CAPHTQK--K PVKKVVKEEK KPRKPGS--A LLNKPVTFGS SEHLVNPKLT ENSTTRP00000007665/1-475 XXXXXXXXXX XXXXXXXEEK KPKKPAPILV SASKLPTFGA PEHLVDLKQT bmy_11959T0/1-555 GLLHIPKPPR PVKKIPKEEK KPKKPPPTIA LPSKLPSFGA PEHLVDLKQT BACU006275/1-1210 GLLHIPKPPR PVKKIPKEEK KPKKPPPTIA SPSKLPTFGV PELLVDLKQT 1001 1050 ENSP00000323889/1-630 GLEAAAKATS SHPNSTSLKA KVLETFLAKS RPELLEYYIK VILDYNTAHN ENSBTAP00000013121/1-631 VQEGAAKAPP VPPTSASLNA KVLENFLTKS RPELLEYVVK VVLDYNTAHS ENSTTRP00000007665/1-475 GQEAEAKVPA RPLTPVTLKA KVLETFLAKS RPELLEYTVK VVLDYNTAHN bmy_11959T0/1-555 GQEAEVKVPT VPPTPVSLKA KVLETFLAKS RPELLEYTVK VILDYNTAHN BACU006275/1-1210 GQEAEAKVPT VLPTPVSLKA KVLETFLAKS RPELLAYTVK VILDYNTAHS 1051 1100 ENSP00000323889/1-630 KVALSECYTV ASVAEMPQNY RPHPQRFTYC SQVLGLHCYK KGIHYWEVEL ENSBTAP00000013121/1-631 KVALSENYTV ASVADASLNY RPHPQRFTYC SQVLGLHCYK KGIHYWEVEL ENSTTRP00000007665/1-475 KVTLSKDYTV ASVADVPQNY RSHPQRFTCC SQVLGLHCYK KGIHYWEVEL bmy_11959T0/1-555 KVALSENYTV ASVADASHNY RPHPQRFTYC SQVLGLHCYK KGIHYWEVEL BACU006275/1-1210 KVVLSENYTV ASVADTCHNY RPHPQRFTYC SQVLGLHCYK KGIHYWEVEL 1101 1150 ENSP00000323889/1-630 QKNNFCGVGI CYGSMNRQGP ESRLGRNSAS WCVEWFNTKI SAWHNNVEKT ENSBTAP00000013121/1-631 QKNNFCGVGI CYGSMERQGP ESRLGRNNAS WCVEWFNTKI SAWHNNVEKT ENSTTRP00000007665/1-475 QKNNFCGVGV CYGSMERQGH ESRLGRNSAS WCVEWFNTKI SAWHNNVEKT bmy_11959T0/1-555 QKNNFCGVGI CYGSMERQGP ESRLGRNSAS WCVEWFNTKV SAWHNNVEKT BACU006275/1-1210 QKNNFCGVGI CYGSMERQGP ESRLGRNSAS WCVEWFNTKV SAWHNNVEKT 1151 1200 ENSP00000323889/1-630 LPSTKATRVG VLLNCDHGFV IFFAVADKVH LMYKFRVDFT EALYPAFWVF ENSBTAP00000013121/1-631 LPSTKATRVG VLLNCDHGFV LFFAAADKVH LLYKYKVDFT EAVYPAFWLF ENSTTRP00000007665/1-475 LPSTKASRVG VLLNCDHGFV IFFAVADKVH LLYKYKVDFT EALYPAFWLF bmy_11959T0/1-555 LPSTKALRVG VLLNCDHGFV IFFAVADKVH MLYKYRVDFA EALYPAFWLF BACU006275/1-1210 LPSTKALRVG VLLNCDHGFV IFFAVADKVH LLYKYKVDFA EALYPAFWLF 1201 1250 ENSP00000323889/1-630 SAGATLSICS PK ENSBTAP00000013121/1-631 STGATLSICS SK ENSTTRP00000007665/1-475 TTGATLSICS SK bmy_11959T0/1-555 STGATLSLCS K- BACU006275/1-1210 STGATLSICS K-