KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:49:13 2014 Check: 00 .. Name: bmy_02717T0/1-424 Len: 787 Check: 9314 Weight: 1.00 Name: ENSP00000301727/1-784 Len: 787 Check: 8138 Weight: 1.00 Name: ENSBTAP00000013136/1-781 Len: 787 Check: 426 Weight: 1.00 Name: BACU009203/1-735 Len: 787 Check: 8095 Weight: 1.00 Name: ENSTTRP00000007773/1-785 Len: 787 Check: 2695 Weight: 1.00 // 1 50 bmy_02717T0/1-424 ---------- ---------- ---------- ---------- ----MLSWPP ENSP00000301727/1-784 MEGAMAVRVT AAHTAEAQAE AGREAGEGAV ---AAVAAAL APSGFLGLPA ENSBTAP00000013136/1-781 MEGAMAVRVT AAHTAEARAE AGREAGEGGV ---AAAAAAL APGGFLGLPA BACU009203/1-735 ----MAVRVT AAHTAEARTE AGQEAGEGGV --AAAAAAAL APGGFLGLPA ENSTTRP00000007773/1-785 MEGAMAVRVT AAHTAEARAE AGQEAGEGGV AAAAAAAAAL APGGFLGLPA 51 100 bmy_02717T0/1-424 P--------- ---------- ---------- ---------- ---------- ENSP00000301727/1-784 PFSEEDEDDV HRCGRCQAEF TALEDFVQHK IQKACQRAPP EALPATPATT ENSBTAP00000013136/1-781 PFSEEDEDDV HRCGRCQAEF TALEDFVQHK LQKACQRAPQ EALPA-TPAA BACU009203/1-735 PFSEEDEDDV HRCGRCQAEF TALEDFVQHK LQKVCQRVPQ EALPATTSAA ENSTTRP00000007773/1-785 PFSEEDEDDV HRCGRCQAEF TALEDFVQHK LQKVCQRVPQ EALPA-TNAT 101 150 bmy_02717T0/1-424 ---------- ---------- ---------- ---------- ---------- ENSP00000301727/1-784 ALLGQEVVPA APGPEEPITV AHIVVEAASL AADISHASDL VGGGHIKEVI ENSBTAP00000013136/1-781 ALLGREVAPG AASSEEPITV AHIVVEAAAL AGDINHSPDI VGGGHIKEVI BACU009203/1-735 ALLGQEVEPA AAGSEEPITV AHIVVEAAAL TADISHAPDI VGGGHIKEVI ENSTTRP00000007773/1-785 ALLGQEVEPA AAGSEEPITV AHIVVEAATL TADISHTPDI VGGGHIKEVI 151 200 bmy_02717T0/1-424 ---------- ---------- ---------- ---------- -----ASLLC ENSP00000301727/1-784 VAAEAELGDG EMAEAPGSPR QQGLGLAGEG EQAQVKLLVN KDGRYVCALC ENSBTAP00000013136/1-781 VASEAEPGDS EMAEGPGSSS ERGPRLAAEG EQAQVKLLVN KDGRYVCMLC BACU009203/1-735 VASEAEPGDS GMAEARGSPN RQGPGLSGEG EQAQVKLLVN KDGRYVCMLC ENSTTRP00000007773/1-785 VASEAEPGDS GMAEAQGSPN CQGPGLSGEG EQAQVKLLVN KDGRYVCMLC 201 250 bmy_02717T0/1-424 SLRWKVASLY AVTL------ ---------- ---------- --------SP ENSP00000301727/1-784 HKTFKTGSIL KAHMVTHSSR KDHECKLCGA SFRTKGSLIR HHRRHTDERP ENSBTAP00000013136/1-781 HKTFKTGSIL KAHMVTHSSR KDHECKLCGA SFRTKGSLIR HHRRHTDERP BACU009203/1-735 HKTFKTGSIL KAHMVTHSSR KDHECKLCGA SFRTKGSLIR HHRRHTDERP ENSTTRP00000007773/1-785 QKTFKTGSIL KAHMVTHSSR KDHECKLCGA SFRTKGSLIR HHRRHTDERP 251 300 bmy_02717T0/1-424 Y--------- -------LFI AFLGPIMEPP RVGVPRSGLH GAARAQPAMG ENSP00000301727/1-784 YKCSKCGKSF RESGALTRHL KSLTPCTEKI RFSVSKDVVV SKEDARAGSG ENSBTAP00000013136/1-781 YKCAKCGKSF RESGALTRHL KSLTPCTEKI RFSMSKDVVV GKEDVPAGSG BACU009203/1-735 YKCAKCGKSF RESGALTRHL KSLTPCTEKI RFSMSKDVVV GKEDTPTGPG ENSTTRP00000007773/1-785 YKCAKCGKSF RESGALTRHL KSLTPCTEKI RFSMSKDVVV GKEDTPTGPG 301 350 bmy_02717T0/1-424 ---------- ---TGGAL-- ---------- ---------- ---------- ENSP00000301727/1-784 AGAAGLGTAT SSVTGEPIET SPVIHLVTDA KGTVIHEVHV QMQELSLGMK ENSBTAP00000013136/1-781 ASTVGPVTPS S--AGEPMET SPVIHLVTDA KGTVIHEVHV QMQELPLGMK BACU009203/1-735 ASTVGTVTSS AM-TGGPMET SPVIHLVTDA KGTVIHEVHV QMQELPLGMK ENSTTRP00000007773/1-785 ASTVGTVTSS AM-TGGPMET SPVIHLVTDA KGTVIHEVHV QMQELPLGMK 351 400 bmy_02717T0/1-424 ------WSPS RWPVRP---- ---------- -----QLCPG PTHALSAVRP ENSP00000301727/1-784 ALAPEPPVSQ ELPCSSEGSR ENLLHQAMQN SGIVLERAAG EEGALEPAPA ENSBTAP00000013136/1-781 ALAPEPTSPQ ELPCSSEGGR ENLLHQAMQN SGIVLERAPG EEGALGPATP BACU009203/1-735 ALTPEPPGPE ELPCSSEGSR ENLLHQAMQN SGIVLERVPG EEGALEPAPP ENSTTRP00000007773/1-785 ALTPEPPGPE ELPCSSEGSR ENLLHQAMQN SGIVLERVPG EEGALEPAPP 401 450 bmy_02717T0/1-424 SQRRP----- --PWRPTKEA TQ-------- ---------- ---------- ENSP00000301727/1-784 AGSSPQPLAV AAPQLPVLEV QPLETQVASE ASAVPRTHPC PQCSETFPTA ENSBTAP00000013136/1-781 TASSPQSPGD AAPELPLLEV EQAETQVAGE ASSVPRTHPC PQCSETFPTA BACU009203/1-735 TVSSPQPLGD GPPELPLLEV EQVET----- ---------- ---------- ENSTTRP00000007773/1-785 TVSSPQPLGD GPPELPLLEV EQVETQVASE ASAVPRTHPC PQCSETFPTA 451 500 bmy_02717T0/1-424 ---------- ---------- CGKAFPKAYL LKKHQEVHVH ERRFRCGDCG ENSP00000301727/1-784 ATLEAHKRGH TGPRPFACAQ CGKAFPKAYL LKKHQEVHVR ERRFRCGDCG ENSBTAP00000013136/1-781 ATLEAHKRGH AGPRPFTCPQ CGKAFPKAYL LKKHQEVHVH ERRFRCGDCG BACU009203/1-735 ---------- ---------- CGKAFPKAYL LKKHQEVHVH ERRFRCGDCG ENSTTRP00000007773/1-785 ATLEAHKRGH AGPRPFTCPQ CGKAFPKAYL LKKHQEVHVH ERRFRCGDCG 501 550 bmy_02717T0/1-424 KLYKTIAHVR GHRRVHSDER PYPCPECGKC YKTKNAQQVH FRTHLEEKPH ENSP00000301727/1-784 KLYKTIAHVR GHRRVHSDER PYPCPKCGKR YKTKNAQQVH FRTHLEEKPH ENSBTAP00000013136/1-781 KLYKTIAHVR GHRRVHSDER PYPCPECGKC YKTKNAQQVH FRTHLEEKPH BACU009203/1-735 KLYKTIAHVR GHRRVHSDER PYPCPECGKC YKTKNAQQVH FRTHLEEKPH ENSTTRP00000007773/1-785 KLYKTIAHVR GHRRVHSDER PYPCPECGKC YKTKNAQQVH FRTHLEEKPH 551 600 bmy_02717T0/1-424 VCPFCSRGFR EKGSLVRHVR HHTGEKPFKC YKCGRGFAEH GTLNRHLRTK ENSP00000301727/1-784 VCQFCSRGFR EKGSLVRHVR HHTGEKPFKC YKCGRGFAEH GTLNRHLRTK ENSBTAP00000013136/1-781 VCPFCSRGFR EKGSLVRHVR HHTGEKPFKC YKCGRGFAEH GTLNRHLRTK BACU009203/1-735 VCPFCSRGFR EKGSLVRHVR HHTGEKPFKC YKCGRGFAEH GTLNRHLRTK ENSTTRP00000007773/1-785 VCPFCSRGFR EKGSLVRHVR HHTGEKPFKC YKCGRGFAEH GTLNRHLRTK 601 650 bmy_02717T0/1-424 GGCLLEVEEL LVSEESPTAA AAVLADDPHT VLVEFSSVVA DTQEYIIEAT ENSP00000301727/1-784 GGCLLEVEEL LVSEDSPAAA TTVLTEDPHT VLVEFSSVVA DTQEYIIEAT ENSBTAP00000013136/1-781 GGCLLEVEEL LVSEESPTAA AAVLTEDPHT VLVEFSSVVA DTQEYIIEAT BACU009203/1-735 GGCLLEVEEL LVSEESPAAA AAVLADDPHT VLVEFSSVVA DTQEYIIEAT ENSTTRP00000007773/1-785 GGCLLEVEEL LVSEESPAAA AAVLADDPHT VLVEFSSVVA DTQEYIIEAT 651 700 bmy_02717T0/1-424 ADDAETSEAT EIIEGTQTEV DSHIMKVVQQ IVHQASAGHQ IIVQNVTMDQ ENSP00000301727/1-784 ADDAETSEAT EIIEGTQTEV DSHIMKVVQQ IVHQASAGHQ IIVQNVTMDE ENSBTAP00000013136/1-781 ADDAETSEAT EIIEGTQTEV DSHIMKVVQQ IVHQASAGHQ IIVQNVTMDQ BACU009203/1-735 ADDAETSEAT EIIEGTQTEV DSHIMKVVQQ IVHQASAGHQ IIVQNVTMDQ ENSTTRP00000007773/1-785 ADDAETSEAT EIIEGTQTEV DSHIMKVVQQ IVHQASAGHQ IIVQNVTMDQ 701 750 bmy_02717T0/1-424 EAGLGTEAAA ADTITIATPE SLTEQVAMTL ASAISEGTVL TARSGTNGAE ENSP00000301727/1-784 ETALGPEAAA ADTITIATPE SLTEQVAMTL ASAISEGTVL AARAGTSGTE ENSBTAP00000013136/1-781 EARLGPEAAA ADTITIATPE SLTEQVAMTL ASAISEGTVL TARSGTGGAE BACU009203/1-735 EAGLGTEAAA ADTITIATPE SLTEQVAMTL ASAISEGSVL TARSGTNGTE ENSTTRP00000007773/1-785 EAGLGTEAAA ADTITIATPE SLTEQVAMTL ASAISEGTVL TARSGTNGAE 751 800 bmy_02717T0/1-424 QATVTMVSSE DIEILEHAGE LVIASPEGQL EVQTVIV ENSP00000301727/1-784 QATVTMVSSE DIEILEHAGE LVIASPEGQL EVQTVIV ENSBTAP00000013136/1-781 QATVTMVSSE DIEILEHAGE LVIASPEGQL EVQTVIV BACU009203/1-735 QATVTMVSSE DIEILEHAGE LVIASPEGQL EVQTVIV ENSTTRP00000007773/1-785 QATVTMVSSE DIEILEHAGE LVIASPEGQL EVQTVIV