KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:49:20 2014 Check: 00 .. Name: ENSP00000260363/1-960 Len: 1185 Check: 3264 Weight: 1.00 Name: ENSTTRP00000012805/1-959 Len: 1185 Check: 3785 Weight: 1.00 Name: ENSBTAP00000013163/1-952 Len: 1185 Check: 9657 Weight: 1.00 Name: bmy_05036T0/1-927 Len: 1185 Check: 76 Weight: 1.00 Name: BACU017956/1-1164 Len: 1185 Check: 6085 Weight: 1.00 // 1 50 ENSP00000260363/1-960 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012805/1-959 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013163/1-952 ---------- ---------- ---------- ---------- ---------- bmy_05036T0/1-927 ---------- ---------- ---------- ---------- ---------- BACU017956/1-1164 MTNETLNIWT HLLPFWFFTW RFVSTLRGTD VLNDSYAWPL LVYMGASCVY 51 100 ENSP00000260363/1-960 ---------- ---MKSARAK T--------- ---------- ---------- ENSTTRP00000012805/1-959 ---------- ---MKPARTK T--------- ---------- ---------- ENSBTAP00000013163/1-952 ---------- ---MKPARTK T--------- ---------- ---------- bmy_05036T0/1-927 ---------- -------RTK T--------- ---------- ---------- BACU017956/1-1164 PLASSCAHTF SSMSRNARHI CYFLDYGAVN LFSLGSAIAY SAYVFPDALV 101 150 ENSP00000260363/1-960 ---------- ---------- ---------- ---PRK---- ---------- ENSTTRP00000012805/1-959 ---------- ---------- ---------- ---PRK---- ---------- ENSBTAP00000013163/1-952 ---------- ---------- ---------- ---PRK---- ---------- bmy_05036T0/1-927 ---------- ---------- ---------- ---PRK---- ---------- BACU017956/1-1164 NTVFHDYYVA LAVLNTSIST GLSCYSRFLE VQKPRLCKML RVLAFAYPYT 151 200 ENSP00000260363/1-960 ---------- ---PTVKKGS QTN------- ---------- ---------- ENSTTRP00000012805/1-959 ---------- ---PPVKKGS QTS------- ---------- ---------- ENSBTAP00000013163/1-952 ---------- ---PPVKKGS QTS------- ---------- ---------- bmy_05036T0/1-927 ---------- ---PPVKKGS QTS------- ---------- ---------- BACU017956/1-1164 WDSLPIFSRL FLFPGESAQN EASLYHQKHM AMTLLASFLY SAHLPERLAP 201 250 ENSP00000260363/1-960 ---------- LKDPVGV--- ---------- ---------- ---YCRVRPL ENSTTRP00000012805/1-959 ---------- LKDPVGV--- ---------- ---------- ---YCRVRPL ENSBTAP00000013163/1-952 ---------- LKDPVGV--- ---------- ---------- ---YCRVRPL bmy_05036T0/1-927 ---------- LKDPVGV--- ---------- ---------- ---YCRVRPL BACU017956/1-1164 GRFDYIDLDF LKSPQPVAKC YMFCFALFSC HQFDATKYYA AQVYCRVRPL 251 300 ENSP00000260363/1-960 GFPDQECCIE VINNTTVQLH TPEGYRLNRN GDYKETQYSF KQVFGTHTTQ ENSTTRP00000012805/1-959 SLPEQECCIE VISNTTVQLH PPEGYRLNRN GDYKETQYSF KQVFGTHTTQ ENSBTAP00000013163/1-952 SLPEQECCIE VINNTTVQLH TPEGNRLNRN GDYKETQYSF KQVFGIHTTQ bmy_05036T0/1-927 SLPEQECCIE VINNTTVQLH TPEGYRLNRN GDYKETQYSF KQVFGTHTTQ BACU017956/1-1164 SLPEQECCIE VINNTTVQLH TPEGYRLNRN GDYKETQYSF KQVFGTHTTQ 301 350 ENSP00000260363/1-960 KELFDVVANP LVNDLIHGKN GLLFTYGVTG SGKTHTMTGS PGEGGLLPRC ENSTTRP00000012805/1-959 KELFDVVANP LVDDLIHGKN GLLFTYGVTG SGKTHTMTGS PGEGGLLPRC ENSBTAP00000013163/1-952 KELFDVVANP LVDDLIHGKN GLLFTYGVTG SGKTHTMTGS PGEGGLLPRC bmy_05036T0/1-927 KELFDVVANP LVDDLIHGKN GLLFTYGVTG SGKTHTMTGS PGEGGLLPRC BACU017956/1-1164 KELFDVVANP LVDDLIHGKN GLLFTYGVTG SGKTHTMTGS PGEGGLLPRC 351 400 ENSP00000260363/1-960 LDMIFNSIGS FQAKRYVFKS NDRNSMDIQC EVDALLERQK REAMPNPKTS ENSTTRP00000012805/1-959 LDMLFNSIGS FQAKRYVFKS NDRNSMDIQC EVDALLERQK REATPNPKTP ENSBTAP00000013163/1-952 LDMLFNSIGS FQAKRYVFKS NDRNSMDIQC EVDALLERQK REATPNPKTP bmy_05036T0/1-927 LDMLFNSIGS FQAKRYVFKS NDRNSMDIQC EVDALLERQK REATPNPKTP BACU017956/1-1164 LDMLFNSIGS FQAKRYVFKS NDRNSMDIQC EVDALLERQK REATPNPKTP 401 450 ENSP00000260363/1-960 SSKRQVDPEF ADMITVQEFC KAEEVDEDSV YGVFVSYIEI YNNYIYDLLE ENSTTRP00000012805/1-959 SSKRQVDPEF ADMINVQEFC KAEEVDEDSV YGVFVSYIEI YNNYIYDLLE ENSBTAP00000013163/1-952 SSKRQVDPEF ADMINVQEFC KAEEVDEDSV YGVFVSYIEI YNNYIYDLLE bmy_05036T0/1-927 SSKRQVDPEF ADMINVQEFC KAEEVDEDSV YG-------- ---------- BACU017956/1-1164 SSKRQVDPEF ADMINVQEFC KAEEVDEDSV YGVFVSYIEI YNNYIYDLLE 451 500 ENSP00000260363/1-960 EVPFDPIKPK PPQSKLLRED KNHNMYVAGC TEVEVKSTEE AFEVFWRGQK ENSTTRP00000012805/1-959 EVPFDPIKPK PPQSKLLRED KNHNMYVAGC TEVEVKSTEE AFEVFWRGQK ENSBTAP00000013163/1-952 EVPFDPIKPK PPQSKLLRED KNHNMYVAGC TEVEVKSTEE AFEVFWRGQK bmy_05036T0/1-927 ---------- -----LLRED KNHNMYVAGC TEVEVKSTEE AFEVFWRGQK BACU017956/1-1164 EVPFDPIKPK PPQSKLLRED KNHNMYVAGC TEVEVKSTEE AFEVFWRGQK 501 550 ENSP00000260363/1-960 KRRIANTHLN RESSRSHSVF NIKLVQAPLD ADGDNVLQEK EQITISQLSL ENSTTRP00000012805/1-959 KRRIANTHLN RESSRSHSVF NIKLVQAPLD ADGDNVLQEK EQITISQLSL ENSBTAP00000013163/1-952 KRRIANTHLN HESSRSHSVF NIKLVQAPLD ADGDNVLQEK EQITISQLSL bmy_05036T0/1-927 KRRIANTHLN RESSRSHSVF NIKLVQAPLD ADGDNVLQEK EQITISQLSL BACU017956/1-1164 KRRIANTHLN HESSRSHSVF NIKLVQAPLD ADGDSVLQEK EQITISQLSL 551 600 ENSP00000260363/1-960 VDLAGSERTN RTRAEGNRLR EAGNINQSLM TLRTCMDVLR ENQMYGTNKM ENSTTRP00000012805/1-959 VDLAGSERTN RTKAEGNRLR EAGNINQSLM TLRTCMEVLR ENQTYGTNKM ENSBTAP00000013163/1-952 VDLAGSERTN RTKAEGNRLR EAGNINQSLM TLRTCMEVLR ENQTYGTNKM bmy_05036T0/1-927 VDLAGSERTN RTKAEGNRLR EAGNINQSLM TLRTCMEVLR ENQTYGTNKM BACU017956/1-1164 VDLAGSERTN RTKAEGNRLR EAGNINQSLM TLRTCMEVLR ENQTYGTNKM 601 650 ENSP00000260363/1-960 VPYRDSKLTH LFKNYFDGEG KVRMIVCVNP KAEDYEENLQ VMRFAEVTQE ENSTTRP00000012805/1-959 VPYRDSKLTH LFKNY-DGEG KVRLIVCVNP KAEDYEESLQ VMRFAEVTQE ENSBTAP00000013163/1-952 VPYRDSKLTH LFKNYFDGEG KVRLIVCVNP KAEDYEESLQ VMRFAEVTQE bmy_05036T0/1-927 VPYRDSKLTH LFKNYFDGEG KVRLIVCVNP KAEDYEESLQ VMRFAEVTQE BACU017956/1-1164 VPYRDSKLTH LFKNYFDGEG KVRLIVCVNP KAEDYEESLQ VMRFAEVTQE 651 700 ENSP00000260363/1-960 VEVARPVDKA ICGLTPGRRY RNQPR-GPVG NEPLVTDVVL QSFPPLPSCE ENSTTRP00000012805/1-959 VEVARPTDKA ISGLTPGRRY RNQARGGPVG DEP-VSEVVL QSFPPLPSWE ENSBTAP00000013163/1-952 VEVARPTDKA ICGLTPGRRY RNQARAGPVG DEPLVSEVVL QSFPPLPSCE bmy_05036T0/1-927 VEVARPTDKA ICGLTPGRRY RNQARGGPVG DELLVSEVVL QSFPPLPSCE BACU017956/1-1164 VEVARPTDKA ICGLTPGRRY RNQARGGPVG DELLVSEVVL QSFPPLPSCE 701 750 ENSP00000260363/1-960 ILDINDEQTL PRLIEALEKR HNLRQMMIDE FNKQSNAFKA LLQEFDNAVL ENSTTRP00000012805/1-959 TMDINEEQDL RRMIEAVENR HHLRQMMIDE FHKQSITFKA LLQEFDNAVL ENSBTAP00000013163/1-952 LLDVNDEQTL PRLIEALERR HHLRQMMIEE FNRQSITFKA LLQEFDNAVL bmy_05036T0/1-927 ILDINDERTL PRLVEALEKR HHLRQMMIDE FHKQS----- LLQEFDNAVF BACU017956/1-1164 ILDINDERTL PRLVEALEKR HHLRQMMIDE FHKQSITFKA LLQEFDNAVL 751 800 ENSP00000260363/1-960 SKENHMQGKL NEKEKMISGQ KLEIERLEKK NKTLEYKIEI LEKTTTIYEE ENSTTRP00000012805/1-959 NKENYIQGKL SEKQKVISGQ KSEIERLEKK NKTLEYKVEI LEKTTTIYEE ENSBTAP00000013163/1-952 NKENYIQGKL NEKEKVISGQ KLEIERLEKK NKTLEYKVEI LEKTTTIYEE bmy_05036T0/1-927 NKENYVQGKL NEKEKVISGQ KSEIERLEKK NKTLEYKVEI LEKTTTIYEE BACU017956/1-1164 NKENYVQGKL NEKEKVISGQ KSEIERLEKK NKTLEYKVEI LEKTTTIYEE 801 850 ENSP00000260363/1-960 DKRNLQQELE TQNQKLQRQF SDKRRLEARL QGMVTETTMK WEKECERRVA ENSTTRP00000012805/1-959 DKRNLQQELE TQNQKLQQQF SDKRRLEARL QGMVTETTMK WEKECERRVA ENSBTAP00000013163/1-952 DKRNLQQELE TQNEKLQRQF SDKRRLEARL QGMVTETTMK WEKECERRVA bmy_05036T0/1-927 DKRNLQQELE TQNQKLQRQF SDKRRLEARL QGMVTETTMK WEKECERRVA BACU017956/1-1164 DKRNLQQELE TQNQKLQRQF SDKRRLEARL QGMVTETTMK WEKECERRVA 851 900 ENSP00000260363/1-960 AKQLEMQNKL WVKDEKLKQL KAIVTEPKTE KPERPSRERD REKVTQRSVS ENSTTRP00000012805/1-959 AKQLEMQNKL WVKDEKLKQL KAIVIEPKTE RPERPSRERD REKATRRSVS ENSBTAP00000013163/1-952 AKQLEMQNKL WVKDEKLKQL KAIVTEPKTE KPERPSRERD REKVTQRSVS bmy_05036T0/1-927 AKQLEMQNKL WVKDEKLKQL KAIVIEPKTE RPERPSRERD REKATQRSVS BACU017956/1-1164 AKQLEMQNKL WVKDEKLKQL KAIVIEPKTE RPERPSRERD REKATQRSVS 901 950 ENSP00000260363/1-960 PSPVPLSSNY IAQISNGQQL MSQPQLHRRS NSCSSISVAS CISEWEQKIP ENSTTRP00000012805/1-959 PSPVPPSSNC IAQISNGQQL MSQPQLHRCS NSCSSISVAS CISEWEQKIP ENSBTAP00000013163/1-952 PSPIPLSSNY IAQISNGQQL MSQ-QLHRRS NSCSSISVAS CISEWEQKIP bmy_05036T0/1-927 PSPVPPSSNY IAQISNGQQL MSQPELHRRS NSCSSISVAS CISEWEQKIP BACU017956/1-1164 PSPVPPSGNY IAQISNGQQL MSQPQLHRRS NSCSSISVAS CISEWEQKIP 951 1000 ENSP00000260363/1-960 TYNTPLKVTS IARRRQQEPG QSKTCIVSDR RRGMYWTEGR EVVPTFRNEI ENSTTRP00000012805/1-959 SYNTPLNVTS IARRRQQEPG QSKTCIVSDR RRGMYWTEGR EVVPSLRNEI ENSBTAP00000013163/1-952 PYNTPLNVTS IARRRQQEPG QSKTCIVSDR RRGMYWNEGR EVVPSLRNEI bmy_05036T0/1-927 AYNTPLNVTS IARRRQQEPG QSKTCIVSDR RRGMYWTEGR EVVPSLRNEI BACU017956/1-1164 AYNTPLNVTS IARRRQREPG QSKTCIVSDR RRGMYWTEGR EVVPSLRNEI 1001 1050 ENSP00000260363/1-960 EIEEDHCGRL LFQ------- --PDQNAPPI RLRHRRSRSA GDRWVDHKPA ENSTTRP00000012805/1-959 EIEEDHCSRF LFQ------- --PDQNVAPV RLRHRRSRSA GDRWVAHKPA ENSBTAP00000013163/1-952 EVEEDHCSR- ---------- -----NAPPI RLRHRRSRSA GDRWVDHKPA bmy_05036T0/1-927 EIEEDHCSRV SASIILKHQS STERWNAPPV RLRHRRSRSA GDRWVDHKPA BACU017956/1-1164 EIEEDHCSR- ---------- -----NAPPV RLRHRRSRSA GDRWVDHKPA 1051 1100 ENSP00000260363/1-960 SNMQTETVMQ PHVPHAITVS VANEKALAKC EKYMLTHQEL ASDGEIETKL ENSTTRP00000012805/1-959 SNLQTETVMQ PQVPHAITVS VANEKALAKC EKYMLTHQEL ASDGEIETKL ENSBTAP00000013163/1-952 TNLQTETVMQ PHVPRAITVS VANEKALAKC EKYMLTHQEL ASDGEIETKL bmy_05036T0/1-927 SNLQTETVMQ PHVPHAITVS VANEKALAKC EKYMLTHQEL ASDGEIETKL BACU017956/1-1164 SNLQTETVMQ PHVPHAITVS VANEKALAKC EKYMLTHQEL ASDGEIETKL 1101 1150 ENSP00000260363/1-960 IKGDIYKTRG GGQSVQFTDI ETLKQESPNG SRKRRSSTVA PAQPDGAESE ENSTTRP00000012805/1-959 IKGDVYKTRG GGQSVQFTEI ETLKQESPTG SRKRRSSTIA PAQPDGTESE ENSBTAP00000013163/1-952 IKGDVYKTRG GGQSVQFTEI ETLKQESPTS -RKRRSSTVA PAQPDGTESE bmy_05036T0/1-927 IKGDVYKTRG GGQSVQFTEI ETLKQESPTG -RKRRSSTVA PAQPDGTESE BACU017956/1-1164 IKGDVYKTRG GGQSVQFTEI ETLKQESPTG -RKRRSSTGA PAQPDGTESE 1151 1200 ENSP00000260363/1-960 WTDVETRCSV AVEMRAGSQL GPGYQHHAQP KRKKP ENSTTRP00000012805/1-959 WTDVETRCSV AVEMRAGSQL GPGYQHHAQP KRKKP ENSBTAP00000013163/1-952 WTDVETRCSV AVEMRAGSQL GPGYQHHAQP KRKKP bmy_05036T0/1-927 WTDVETRCSV AVEMRAGSQL GPGYQHHAQP KRKKP BACU017956/1-1164 WTDVETRCSV AVEMRAGSQL GPGYQHHAQP K----