KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:49:26 2014 Check: 00 .. Name: ENSP00000433757/1-705 Len: 727 Check: 3551 Weight: 1.00 Name: ENSTTRP00000010423/1-725 Len: 727 Check: 5348 Weight: 1.00 Name: bmy_20247T0/1-661 Len: 727 Check: 523 Weight: 1.00 Name: ENSBTAP00000013201/1-705 Len: 727 Check: 4048 Weight: 1.00 Name: BACU004012/1-705 Len: 727 Check: 3712 Weight: 1.00 // 1 50 ENSP00000433757/1-705 MDADKEKDLQ KFLKNVDEIS NLIQEMNSDD PVVQQKAVLE TEKRLLLMEE ENSTTRP00000010423/1-725 MADYQEEDLQ KFLKNVDEIT NLIQEMNSDD PVVQEKAVLE TEKRLKFTEE bmy_20247T0/1-661 MADYQEEDLQ KFLKNVDEIT NLIQEMNSDD PVVREKAVLE TEKRLQFTEE ENSBTAP00000013201/1-705 MADYQEEDLQ KFLKNVDEIT SLIQEMNSDD PVVREKAVLE TEKRLQFTEG BACU004012/1-705 MADYQEEDLQ KFLKNVDEIT NLIQEMNSDD PVVREKAVLE TEKRLQFTEE 51 100 ENSP00000433757/1-705 DQEEDECRTT LNKTMISPPQ TAMKSAEEIN SEAFLASVEK DAKERAKRRR ENSTTRP00000010423/1-725 DQEEDECRTT VNKTMISPPQ APTKNTDEIN TEAFLASVEK DAKERAKRRR bmy_20247T0/1-661 DQEEDECRTT VNKTMISPPQ APTKNTDEVN TEAFLASMEK DAKERAKRRR ENSBTAP00000013201/1-705 GREEDECRTT VNKTVISPPQ APTKDTDEIN TEAFLASLEK DAKERAKRRR BACU004012/1-705 DQEEDECRTT VNKTMISPPQ APTKNTDEIN TEAFLASMEK DAKERAKRRR 101 150 ENSP00000433757/1-705 ENKVLADALK EKGNEAFAEG NYETAILRYS EGLEKLKDMK VLYTNRAQAY ENSTTRP00000010423/1-725 ENKVLADALK EKGNEAFVKG DYETAILCYS EGLEKLKDMK VLYTNRAQAY bmy_20247T0/1-661 ENKVLADALK EKGNEAFVKG DYETAILCYS EGLEKLKDVK VLYTNRAQAY ENSBTAP00000013201/1-705 ENKVLADALK EKGNAAFVRG DYETAILCYS EGLEKLKDMK VLYTNRAQAY BACU004012/1-705 ENKVLADALK EKGNEAFVKG DYETAILCYS EGLEKLKDMK VLYTNRAQAY 151 200 ENSP00000433757/1-705 MKLEDYEKAL VDCEWALK-C DEKCTKAYFH MGKANLALKN YSVSRECYKK ENSTTRP00000010423/1-725 IKLGDYQKAL VDCDWALK-C DEKCTKAYFH MGKAHLALKN YSVSRECYQK bmy_20247T0/1-661 IKLGDYRKAL VDCEWALKWL TLHCCV---- ISSILCEFSR LHSTAPCLSS ENSBTAP00000013201/1-705 IKLGDYRKAL VDCDWALK-C DEKCTKAYFH MGKAHLALKN YSVSRECYQK BACU004012/1-705 IKLGDYRKAL VDCEWALK-C DEKCTKAYFH MGKAHLALKN YSVSRECYQK 201 250 ENSP00000433757/1-705 ILEINPKLQT QV-KGYLNQV DLQEKADLQE KEAHELLDSG KNTAVTTKNL ENSTTRP00000010423/1-725 ILEINPQLQT QV-KDYLNQV DLREKADLQE KEAQEALDSG TNTAVTTKNL bmy_20247T0/1-661 SYSFS--LQA LVSSDYLNQV DLREKADLQE KEAQEALDSG TNTAVTTKNL ENSBTAP00000013201/1-705 ILEINPQLQT QV-KEYLNQV DLREKADVQE KEAQESLDSG KNSAVTTKNL BACU004012/1-705 ILEINPQLQT QV-KDYLNQV DLREKADLQE KEAQEALDSG MNTAVTTKNL 251 300 ENSP00000433757/1-705 LETLSKPDQI PLFYAGGIEI LTEMINECTE QTLFRMHNGF SIISDNEVIR ENSTTRP00000010423/1-725 LEILSKPDQI PLFYAGGIEI LTDMMKDCTE RTLFRTHNGF SXXXXXXXXX bmy_20247T0/1-661 LEILSKPDQI PSFYAGGIEI LTDMMKDCTE RTLFRTHDGF SIISENEVIR ENSBTAP00000013201/1-705 LETLSKPDQI PLFYAGGIEI LTEMMKDCTE RTLFRTNNGF NIISENEVIR BACU004012/1-705 LEILSKPDQI PSFYAGGIEI LTDMMKDCTE RTLFRTHNGF SIISENEVIR 301 350 ENSP00000433757/1-705 RCFSTAGNDA VEEMVCVSVL KLWQAVCSRN EENQRVLVIH HDRARLLAAL ENSTTRP00000010423/1-725 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XENQRLLVLC PDTGQLLPSL bmy_20247T0/1-661 RCFSTAGKDA VEETVCMSVL RLWQAVCSEN EENQRLLVLR PDTGHLLPSL ENSBTAP00000013201/1-705 RCFSTAGKDA VEETVCLSVL RLWQAVCSEN EENQRLLVLR PDTGPLLPSL BACU004012/1-705 RCFSTAGKDA VEETVCMSVL RLWQAVCSEN EENQRLLVLR PDTGQLLPSL 351 400 ENSP00000433757/1-705 LSSKVLAIRQ QSFALLLHLA QTESGRSLII NHLDLTRLLE ALVSFLDFSD ENSTTRP00000010423/1-725 LASRVPNIRQ QTLALLLQLA QTENGRSLIM GHLDLTGLLE ALVSFLDFSD bmy_20247T0/1-661 LASRVPNIRQ QTLALLLQLA QTENGRSLIM GHLDLTGLLE ALVSFLDFSD ENSBTAP00000013201/1-705 LASRVPAIRQ QSLALLLQLA QTENGRSLII GHLDLIRLLE ALVSFLDFSD BACU004012/1-705 LASRVPNIRQ QTLALLLQLA QTENGRTLIM GHLDLTGLLE ALVSFLDFSD 401 450 ENSP00000433757/1-705 KEANTAMGLF TDLALEERFQ VWFQANLPGV LPALTGVLKT DPKVSSSSAL ENSTTRP00000010423/1-725 KKANSAMGLL TDLALEERFQ VWFQASLPDV LLALTGVLRR DPKVTNTSAL bmy_20247T0/1-661 KKANSAMGLL TDLALEERFQ VWFQASLPDV LLALTGVLKR DPKVTNTSAL ENSBTAP00000013201/1-705 KKANSAMGLL TDLALQERFQ AWFQTSLPDV LPVLTGVLKR DPKVTNISAL BACU004012/1-705 KKANSAMGLL TDLALEERFQ VWFQASLPDV LLALTGVLKR DPKVTNTSAL 451 500 ENSP00000433757/1-705 CQCIAIMGNL SAEPTTRRHM AACEEFGDGC LSLLARCEED VDLFREVIYT ENSTTRP00000010423/1-725 CQCIAIMGNL SAEAATRRQM SASEEFRDAC LGLMAKCEEG VNLFREVMYT bmy_20247T0/1-661 CQCIAIMGNL SAEAATRRQM SASEEFRDAC LGLMAKCEED VDLFREVMYT ENSBTAP00000013201/1-705 CQCLAIMGNF SAEAAAQRQM SASEDFGAAC LGLMAKCEED ADLFRDVMYA BACU004012/1-705 CQCIAVMGNL SAEAATRRQM SASEEFRDAC LGLVAKCEED MDLFREVMYT 501 550 ENSP00000433757/1-705 LLGLMMNLCL QAPFVSEVWA VEVSRRCLSL LNSQDGGILT RAAGVLSRTL ENSTTRP00000010423/1-725 LLGLMMNLCL QSPFVSEVWA MEVSRKCLSL LNSQDGGILT RAAGVLSRTL bmy_20247T0/1-661 LLGLMMNLCL QSPCVSEVWA MEVSRKCLSL LNSQDGGILT ---------- ENSBTAP00000013201/1-705 LLGLVMNLCL QSPFVSEVWA MEVSKKCLSL LNSQDGGILT RAAGVLSRTL BACU004012/1-705 LLGLMMNLCL QSPFVSEVWA MEVSRKCLSL LNSQDGGILT RAAGILSRTL 551 600 ENSP00000433757/1-705 SSSLKIVEEA LRAGVVKKMM KFLKTGGETA SRYAIKILAI CTNSYHEARE ENSTTRP00000010423/1-725 VSSPKIVEEA LRAGVVKKMV KFLKAGGQTA SRYAVKILAI CTNSYHEARE bmy_20247T0/1-661 ---------- ---------- ----AGGQTA SRYAVKILAI CTNSYHEARG ENSBTAP00000013201/1-705 SSSLKIVEEA LRAGVVKKMI KFLKAGGQTA SRYAVKILAI CTNSYQEARE BACU004012/1-705 ASSLKIVEEA LRAGVVKKMI KFLKAGGQTA SRYAVKILAI CTNSYHEARE 601 650 ENSP00000433757/1-705 EVIRLDKKLS VMMKLLSSED EVLVGNAALC LGNCMEVPNV ASSLLKTDLL ENSTTRP00000010423/1-725 ELIRLDKKLG VLMQLLGSED EILVGNATLC LGNCMEVPHV ASSLLTTDIV bmy_20247T0/1-661 ELIRLDKKLG VLMQLLGSED EILVGNATLC LGNCMEVPHV ASSLLTTDIV ENSBTAP00000013201/1-705 EVLRLDKKLG VLMQLLDSED EILVGNAALC LGNCMEVPRA ASSLLSTDIV BACU004012/1-705 ELIRLDKKLG VLMQLLGSED EILVGNATLC LGNCVEVPHV ASSLLTTDIV 651 700 ENSP00000433757/1-705 QVLLKLAGSD TQKTAVQVNA GIALGKLCTA EPRFAA---- ---------- ENSTTRP00000010423/1-725 LVLLKLAGGD AQKTAVQLNA GIALGKLCTA EPREPAKGSH LCFGGGSAAP bmy_20247T0/1-661 PVLLKLAGGD AQKTAVQLNA GIALGKLCTA EPSKSS---- ---------- ENSBTAP00000013201/1-705 PVLLKLAGSD AQQTAVQLNA GIALGKLCTA EPRFAA---- ---------- BACU004012/1-705 PVLLKLAGGD AQKTAVQLNA GIALGKLCTA EPRFAA---- ---------- 701 750 ENSP00000433757/1-705 ------QLRK LHGLEILNST MKYISDS ENSTTRP00000010423/1-725 EVPSSRRWRE MFTLVSVAAE PPPPRHL bmy_20247T0/1-661 ------HFLN ALKIRALQRA Q------ ENSBTAP00000013201/1-705 ------LLRE LHGMEILNST MKYVESS BACU004012/1-705 ------LLRE LHGMEILSST MKYMDNS