KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:49:26 2014 Check: 00 .. Name: bmy_08345T0/1-470 Len: 553 Check: 766 Weight: 1.00 Name: ENSP00000200652/1-551 Len: 553 Check: 8111 Weight: 1.00 Name: ENSTTRP00000002729/1-450 Len: 553 Check: 6554 Weight: 1.00 Name: ENSBTAP00000013203/1-553 Len: 553 Check: 4896 Weight: 1.00 // 1 50 bmy_08345T0/1-470 MQDYDEVTAF LGEWGPFQRL IFFLLSASII PNGFNGMSVV FLAGTPEHHC ENSP00000200652/1-551 MRDYDEVIAF LGEWGPFQRL IFFLLSASII PNGFNGMSVV FLAGTPEHRC ENSTTRP00000002729/1-450 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013203/1-553 MRDYDEVTAF LGKWGPFQRL IFFLLSASII PNGFNGMSVV FLAGTPEHHC 51 100 bmy_08345T0/1-470 RVPDTANLSS VWRNHSLPLQ LRDGREVPHS CRRYRLATIV NFSELGLEPG ENSP00000200652/1-551 RVPDAANLSS AWRNNSVPLR LRDGREVPHS CSRYRLATIA NFSALGLEPG ENSTTRP00000002729/1-450 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013203/1-553 RVPDTANLSS AWRNHSIPVR LQDGREVPQS CRRYRLATIV NFSALGLEPG 101 150 bmy_08345T0/1-470 RDVDLEQLEQ EGCLDGWEFN QDIYLSTIVT E--------- ---------- ENSP00000200652/1-551 RDVDLGQLEQ ESCLDGWEFS QDVYLSTVVT EWNLVCEDNW KVPLTTSLFF ENSTTRP00000002729/1-450 -DVDLEQLEQ EGCLDGWEFN QDIYLSTIVT EWSLVCEDDW KTPLTTSLFF ENSBTAP00000013203/1-553 RDVNLEQLEQ EGCLDGWEFS QDIYMSTIVT EWSLVCEEDW KTPLTTSLFF 151 200 bmy_08345T0/1-470 VGVLLGSFVS GQLSDRFGRK TILFSTMAVQ TGFSFLQIFS INWEMFTILF ENSP00000200652/1-551 VGVLLGSFVS GQLSDRFGRK NVLFATMAVQ TGFSFLQIFS ISWEMFTVLF ENSTTRP00000002729/1-450 VGVLLGSFVS GQLSDRFGRK TILFATMAVQ TGFSFLQIFS INWEMFTMLF ENSBTAP00000013203/1-553 VGVLLGSFVS GQLSDRFGRK TILFATMAVQ TGFSFLQVFS INWEMFTVLF 201 250 bmy_08345T0/1-470 VIVGMGQISN YVVAFILGTE ILGKSVRIIF SMLGVCTFFA VGYMLLPLFA ENSP00000200652/1-551 VIVGMGQISN YVVAFILGTE ILGKSVRIIF STLGVCTFFA VGYMLLPLFA ENSTTRP00000002729/1-450 VIVGMGQISN YVVAFILGTE ILGKSVRIIF STLGVCTFFA VGYMLLPLFA ENSBTAP00000013203/1-553 VIVGMGQISN YVVAFILGTE ILGKSVRIIF STLGVCTFFA IGYMLLPLFA 251 300 bmy_08345T0/1-470 YFIRDWRMLL LALSLPGVLC FPLWWFIPES PRWLISQRRF REAEDIIQKA ENSP00000200652/1-551 YFIRDWRMLL LALTVPGVLC VPLWWFIPES PRWLISQRRF REAEDIIQKA ENSTTRP00000002729/1-450 YFIRDWRMLL LALTVPGVLC FPLWWFIPES PRWLISQRRF REAEDIIQKA ENSBTAP00000013203/1-553 YFIRDWRMLL LALTVPGVLC VPLWWFIPES PRWLISQRRF KEAEDIIQKA 301 350 bmy_08345T0/1-470 AKMNNVAAPV VVFDPVE--E LTPLKQQKVF ILDLFRTRNI GIITIMSLLL ENSP00000200652/1-551 AKMNNIAVPA VIFDSVE--E LNPLKQQKAF ILDLFRTRNI AIMTIMSLLL ENSTTRP00000002729/1-450 AKMNNVAAPV VVFNPVE--E VTPVKQEKVF ILDLFRTRNI GTITIMSLLL ENSBTAP00000013203/1-553 AKINNVTAPV VVFDPVEQQE QLPLKQQKVF ILDLFRTRNI ATITIMSLLL 351 400 bmy_08345T0/1-470 WMLTSVGYFA LSLNTPNLYG DAYLNCFFSA LIEVPAYITA WLLLRTLPRR ENSP00000200652/1-551 WMLTSVGYFA LSLDAPNLHG DAYLNCFLSA LIEIPAYITA WLLLRTLPRR ENSTTRP00000002729/1-450 WMVTSVGYFA LSLNTPNLHG DAYLNCFFSA LIEVPAYITA WLLLRTLPRR ENSBTAP00000013203/1-553 WMLTSVGYFA LSLNTPNLHG DPYLNCFFSA LIEVPAYIAA WLLLRTLPRR 401 450 bmy_08345T0/1-470 YVIAGVLFLG GGVLLLIQLV PADYNFLSIG LAMLGKFGIT SAFSMLYVFT ENSP00000200652/1-551 YIIAAVLFWG GGVLLFIQLV PVDYYFLSIG LVMLGKFGIT SAFSMLYVFT ENSTTRP00000002729/1-450 YVISGVLFLG GGVLLLIQLV PADYNFLSIG LAMLGKFGIT SAFSMLYVFT ENSBTAP00000013203/1-553 YVIAGVLFFG GSVLLLIQLV PAGYNFLSIG LAMLGKFGVT SAFAMLYVFT 451 500 bmy_08345T0/1-470 AELYPTLVQI QEKNKRFNGE RRKSQSSNNF ILI----KFP PYLVN----- ENSP00000200652/1-551 AELYPTLVRN MAVGVTSTAS RVGSIIAPYF VYLGAYNRML PYIVMGSLTV ENSTTRP00000002729/1-450 AELYPTLVRN MAVGVTSMAS RVGSIIAPYF VYLGAYNRVL PYILMGSLTV ENSBTAP00000013203/1-553 AELYPTLVRN MAVGVASMAS RVGSIIAPYF VYLGAYNRVL PYILMGSLTV 501 550 bmy_08345T0/1-470 ---------- ---------- ---------- ---------- ---------- ENSP00000200652/1-551 LIGILTLFFP ESLGMTLPET LEQMQKVKWF RSGKKTRDSM ETEENPKVLI ENSTTRP00000002729/1-450 LIGIITLLFP ESFGMTLPET LEQMQKMKWF RYGKKTKDSM EKEENPKVLI ENSBTAP00000013203/1-553 LIGIITLFFP ESFGRTLPET LEQMQKVKGF RYGKKTKGSM EKEENSKVII 551 600 bmy_08345T0/1-470 --- ENSP00000200652/1-551 TAF ENSTTRP00000002729/1-450 TSF ENSBTAP00000013203/1-553 TSF