KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:49:27 2014  Check: 00 ..

 Name: ENSP00000262375/1-480     Len:    480  Check:  5306  Weight:  1.00
 Name: BACU009157/1-467          Len:    480  Check:  9891  Weight:  1.00
 Name: ENSBTAP00000013207/1-453  Len:    480  Check:  2559  Weight:  1.00
 Name: ENSTTRP00000005021/1-356  Len:    480  Check:  2667  Weight:  1.00
 Name: bmy_02790T0/1-480         Len:    480  Check:  6082  Weight:  1.00

//


                          1                                                   50
ENSP00000262375/1-480     MAARCSTRWL LVVVGTPRLP AISGRGARPP REGVVGAWLS RKLSVPAFAS 
BACU009157/1-467          MAAWCSTRWL LVAVGAPRLP AAAGRGARPP MGGVVGASLG RSLSVTAFAP 
ENSBTAP00000013207/1-453  MAARHSTRWL LVAVGTPRLP AAAGRGARPP MGGVVGASLG RNLSVTAFPP 
ENSTTRP00000005021/1-356  ---------- ---------- ---------- ---------- ---------- 
bmy_02790T0/1-480         MAAWCSTRWL LVAVGAPRLP AAAGRGARPP MGGVVGASLG RSLSVTAFAP 


                          51                                                 100
ENSP00000262375/1-480     SLTSCGPRAL LTLRPGVSLT GTKHNPFICT ASFHTSAPLA KEDYYQILGV 
BACU009157/1-467          SLGARGPGAL LTLRPGVSLT GVKSYPFLCT ASFHTSAPLA KEDYYQILGV 
ENSBTAP00000013207/1-453  SLGGRGPGAL LTLRPGVSFT GVKRYPFVCI ASFHTSTHLA KEDYYQILGV 
ENSTTRP00000005021/1-356  ---------- ---------- ---------- ---------- ---------- 
bmy_02790T0/1-480         SLGARGPGAL LTLRPSVSLT GVKSYPFLCT ASFHTSAPLA KEDYYQILGV 


                          101                                                150
ENSP00000262375/1-480     PRNASQKEIK KAYYQLAKKY HPDTNKDDPK AKEKFSQLAE AYEVLSDEVK 
BACU009157/1-467          PRSASQKEIK KAYYQLAKKY HPDTNKDDPK AKEKFSQLAE AYEVLSDEVK 
ENSBTAP00000013207/1-453  PRNASQKEIK KAYYQLAKKY HPDTNKDDPK AKEKFSQLAE AYEVLSDEVK 
ENSTTRP00000005021/1-356  ---------- -----LAKKY RPDTNKDDPK AKEKFSQLAE AYEVLSDEVK 
bmy_02790T0/1-480         PRSASQKEIK KAYYQLAKKY HPDTNKDDPK AKEKFSQLAE AYEVLSDEVK 


                          151                                                200
ENSP00000262375/1-480     RKQYDAYGSA GFDPGASGSQ HSYWKGGPTV DPEELFRKIF GEFSSSSFGD 
BACU009157/1-467          RKQYDTYGST GFDTGASSSG QSYWKGGPTV DPEELFRKIF GEFSSSSFGD 
ENSBTAP00000013207/1-453  RKQYDTYGSA GFDPGAGSSG QSYWKGGPTV DPEELFRKIF GEFSSSSFGD 
ENSTTRP00000005021/1-356  RKQYDTYGSA GFDPGAGSSG QSYWKGGPTV DPEELFRKIF GEFSSSSFGD 
bmy_02790T0/1-480         RKQYDTYGSA GFDPGAGSSG QSYWKGGPTV DPEELFRKIF GEFSSSSFGD 


                          201                                                250
ENSP00000262375/1-480     FQTVFDQPQE YFMELTFNQA AKGVNKEFTV NIMDTCERCN GKGNEPGTKV 
BACU009157/1-467          FQSVFHQPQE YIMELTFNQA AKGVNKEFTV NITDTCERCD GKGNEPGTKV 
ENSBTAP00000013207/1-453  FQSVFNQPQE YIMDLTFNQA AKGVNKEFTV NITDTCERCD GKGNEPGTKV 
ENSTTRP00000005021/1-356  FQSVFHQPQE YIMELTFNQA AKGVNKEFTV NITDTCERCG GKGNEPGTKM 
bmy_02790T0/1-480         FQSVFHQPQE YIMELTFNQA AKGVNKEFTV NITDTCERCD GKGNEPGTKV 


                          251                                                300
ENSP00000262375/1-480     QHCHYCGGSG METINTGPFV MRSTCRRCGG RGSIIISPCV VCRGAGQAKQ 
BACU009157/1-467          QHCHYCGGSG METINTGPFV MRSTCRRCGG RGSIVTSPCV VCRGAGEAKQ 
ENSBTAP00000013207/1-453  QHCHYCGGSG METINTGPFV MRSTCRRCGG RGSIITSPCV VCRGAGQAKQ 
ENSTTRP00000005021/1-356  QHCHYCGGSG METINTGPFV MRSTCRRCGG RGSIITSPCV VCRGAGEAKQ 
bmy_02790T0/1-480         QHCHYCGGSG METINTGPFV MRSTCRRCGG RGSIVTSPCV VCRGAGEAKQ 


                          301                                                350
ENSP00000262375/1-480     KKRVMIPVPA GVEDGQTVRM PVGKREIFIT FRVQKSPVFR RDGADIHSDL 
BACU009157/1-467          KKKVVIPVPA GVEDGQTVRM PVGKREIFIT FRVQKSPVFQ RDGADIHSNL 
ENSBTAP00000013207/1-453  KKKVVIPVPA GVEDGQTVRM PVGKREIFIT FRVQKSPVFR RDGADIHSDL 
ENSTTRP00000005021/1-356  KKKVVIPVPA ---------V PVGKREIFIT FRVQKSPVFR RDGADIHSDL 
bmy_02790T0/1-480         KKKVVIPVPA GVEDGQTVRM PVGKREIFIT FRVQKSPVFQ RDGADIHSNL 


                          351                                                400
ENSP00000262375/1-480     FISIAQALLG GTARAQGLYE TINVTIPPGT QTDQKIRMGG KGIPRINSYG 
BACU009157/1-467          FISIAQAILG GTARAQGLYE TINVVIPPGT QSDQKIRMSG KGIPRINSYG 
ENSBTAP00000013207/1-453  FISIAQAILG GTARTQGLYE TINVTIPPGT QSDQKIRMSG KGIPRINSYG 
ENSTTRP00000005021/1-356  FISIAQAILG GTARAQGLYE TINVMIPPGT QSDQKIRMSG KGIPRINSYG 
bmy_02790T0/1-480         FISIAQAILG GTARAQGLYE TINVVIPPGT QSDQKIRMSG KGIPRINSYG 


                          401                                                450
ENSP00000262375/1-480     YGDHYIHIKI RVPKRLTSRQ QSLILSYAED ETDVEGTVNG VTLTSSGGST 
BACU009157/1-467          YGDHYIHIKI RVPKRLTSRQ QSLILSYAED ETDVEGTVNG VTNTSTGQKS 
ENSBTAP00000013207/1-453  YGDHYIHIKI RVPKRLTSRQ QSLILSYAED ETDVEGTVNG VTNTSTGKRS 
ENSTTRP00000005021/1-356  YGDHYIHIKI RVPKRLTSRQ QSLILSYAED ETDVEGTVNG VTNTSTGGST 
bmy_02790T0/1-480         YGDHYIHIKI RVPKRLTSRQ QSLILSYAED ETDVEGTVNG VTNTSTGGST 


                          451                                                500
ENSP00000262375/1-480     MDSSAGSKAR REAGEDEEGF LSKLKKMFTS 
BACU009157/1-467          ---------- -DVGID--CV IRVQRPTVYP 
ENSBTAP00000013207/1-453  TGN------- ---------- ---------- 
ENSTTRP00000005021/1-356  MDSSAGGKAR PEAGEDKEGL LSKLKKMFTS 
bmy_02790T0/1-480         MDSSAGGKAR PEAGEDKEGF LSKLKKMFTS