KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:49:35 2014 Check: 00 .. Name: ENSP00000387331/1-621 Len: 630 Check: 5361 Weight: 1.00 Name: ENSBTAP00000013255/1-628 Len: 630 Check: 1817 Weight: 1.00 Name: bmy_07719T0/1-544 Len: 630 Check: 8802 Weight: 1.00 Name: BACU020153/1-496 Len: 630 Check: 1050 Weight: 1.00 // 1 50 ENSP00000387331/1-621 MSRQNLVALT VTTLLGVAVG GFVLWKGIQR RRRSKTSPVT Q--------- ENSBTAP00000013255/1-628 -MSKHLVALT VTTLLGVAVG GFVLWKGFQR RR-SKSSPVT RRRLSQQQQQ bmy_07719T0/1-544 -MSKHLVAWT VTTLLGMAVG GFVLWKGIQR RR-SKASRVT QKQLP----- BACU020153/1-496 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000387331/1-621 QPQQKVLGSR ELPPPEDDQL HSSAPRSSWK ERILKAKVVT VSQEAEWDQI ENSBTAP00000013255/1-628 QQQQQVPGGR ELPAPGEDQP HSIAPRASWE ERILGAKVMT VSQEAEWDQI bmy_07719T0/1-544 QQQQKVPGRR EQPTPVEDQP HSSAPRASWE ERILGAKVVT VSQEAEWDQI BACU020153/1-496 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000387331/1-621 EPLLRSELED FPVLGIDCEW VNLEGKASPL SLLQMASPSG LCVLVRLPKL ENSBTAP00000013255/1-628 EPSLRSEIED FPVLGIDCEW VNSEGKASPL SLLQMASPSG FCVLVRLPKL bmy_07719T0/1-544 EPLLRSELED FPVLGIDCEW VNSEGKASPL SLLQMASPSG FCVLVRLPRL BACU020153/1-496 ---------- ---------- ---------- ----MASPSG FCVLVRLPKL 151 200 ENSP00000387331/1-621 ICGGKTLPRT LLDILADGTI LKVGVGCSED ASKLLQDYGL VVRGCLDLRY ENSBTAP00000013255/1-628 ICGGKTLPKT LLDILADGTI LKVGVGCSED ASKLLQDYGL VVKGCLDLRY bmy_07719T0/1-544 ICGGRTLPKT LLDVLADGTI LKVGVGCSED ASKLLQDYGL VVKG------ BACU020153/1-496 ICGGRTLPKT LLDILADGTI LKVGVGCSED ASKLLQDYGL VVKGCLDLRY 201 250 ENSP00000387331/1-621 LAMRQRNNLL CNGLSLKSLA ETVLNFPLDK SLLLRCSNWD AETLTEDQVI ENSBTAP00000013255/1-628 LAMRQRNNLL SNGLSLKSLS ETVLNFPLDK SLLLRCSNWD AENLTEDQVI bmy_07719T0/1-544 ---------- ---------- ---------- ---------- ---------- BACU020153/1-496 LAMRQRNNLL SNGLSLKSLA ETVLNFPLDK SLLLRCSNWD AENLTEDQVI 251 300 ENSP00000387331/1-621 YAARDAQISV ALFLHLLGYP FSRNSPGEKN DDHSSWRKVL EKCQGVVDIP ENSBTAP00000013255/1-628 YAARDAQISV ALFLHLLGYP FSRNSTLEEN DDHIVWRKIL EKCQDVVDIP bmy_07719T0/1-544 ---------- ---------- ---NSTLEEN DDFIGWRKVL EKCQDVVDIP BACU020153/1-496 YAARDAQISV ALFLHLLGYP FSRNSTLEEN DDFIGWRKVL EKCQDVVDIP 301 350 ENSP00000387331/1-621 FRSKGMSRLG EEVNGEATES QQKPRNKKSK MDGMVPGNHQ GRDPRKHKRK ENSBTAP00000013255/1-628 FRSKGLSRSG EEVNGEATES QQKTRNKKSK ADGMMPGNQQ GRDPRKHKRK bmy_07719T0/1-544 FRSKGISRLG EEVNGEATES QQKPRNKKSK TNGMMPGNHQ GRDPRKHKRK BACU020153/1-496 FRSKGISRLG EEVNGEATES QQKPRNKKSK TNGMMPGNHQ GRDPRKHKRK 351 400 ENSP00000387331/1-621 PLGVGYSARK SPLYDNCFLH APDGQPLCTC DRRKAQWYLD KGIGELVSEE ENSBTAP00000013255/1-628 PLGVGYSARK SPLYDNCFLH APDGQPLCTC DRRKAQWYLD KGIGELVSEE bmy_07719T0/1-544 PLGVGYSARK SPLYDNCFLH APDGQPLCTC DRRKAQWYLD KGIGELVSEE BACU020153/1-496 PLGVGYSARK SPLYDNCFLH APDGQPLCTC DRRKAQWYLD KGIGELVSEE 401 450 ENSP00000387331/1-621 PFVVKLRFEP AGRPESPGDY YLMVKENLCV VCGKRDSYIR KNVIPHEYRK ENSBTAP00000013255/1-628 PFVVKLQFEP AGRPESPGDY YLMVKENLCV VCGKKDSYIR KNVIPHEYRK bmy_07719T0/1-544 PFVVKLQFEP AGRPESPGDY YLMVKENLCV VCGKKDSYIR KNVIPHEYRK BACU020153/1-496 PFVVKLQFEP AGRPESPGDY YLMVKENLCV VCGKKDSYIR KNVIPHEYRK 451 500 ENSP00000387331/1-621 HFPIEMKDHN SHDVLLLCTS CHAISNYYDN HLKQQLAKEF QAPIGSEEGL ENSBTAP00000013255/1-628 HFPIEMKDHN SHDVLLLCTS CHAISNYYDI HLKQQLAREF QAPIGSEEGL bmy_07719T0/1-544 HFPIEMKDHN SHDVLLLCTS CHAISNYYDN HLKQQLAREF QAPTGSEEGL BACU020153/1-496 HFPIEMKDHN SHDVLLLCTS CHAISNYYDN HLKQQLAREF QAPTGSEEGL 501 550 ENSP00000387331/1-621 RLLEDPERRQ VRSGARALLN AESLPTQRKE ELLQALREFY NTDVVTEEML ENSBTAP00000013255/1-628 RLLEDPERRQ VRSGARALLN AESLPAHRKE ELLQGLREFY RTDRVTEEML bmy_07719T0/1-544 RLLEDPERRQ VRSGARALLN AEGLPAHRKE ELLQALREFY RTDTVTEEML BACU020153/1-496 RLLEDPERRQ VRSGARALLN AEGLPAHRKE ELLQALREFY HTDMVTEEML 551 600 ENSP00000387331/1-621 QEAASLETRI SNENYVPHGL KVVQCHSQGG LRSLMQLESR WRQHFLDSMQ ENSBTAP00000013255/1-628 QEAASLETRI SNENYIPHGL KVVQRHTQGG LRSLMQLESR WRQHFLDSMQ bmy_07719T0/1-544 QEAAGLETRI SNENYIPHGL KVVQRHTQGG LRSLMQLESR WRQHFLDSMQ BACU020153/1-496 QEAAGLETRI SNENYIPHGL KVVQRHTQGG LRSLMQLESR WRQHFLDSMQ 601 650 ENSP00000387331/1-621 PKHLPQQWSV DHNHQKLLRK FGEDLPIQLS ENSBTAP00000013255/1-628 PRHLPQQWSV DHNHQKLLRK YGEDLPIKLS bmy_07719T0/1-544 PKHLPQQWSV DHNHQKLLRK YGEDLPIKLS BACU020153/1-496 PKHLPQQWSV DHNHQKLLRK YGEDLPIKLS