KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:49:36 2014 Check: 00 .. Name: ENSBTAP00000013267/1-489 Len: 494 Check: 6022 Weight: 1.00 Name: ENSP00000378555/1-491 Len: 494 Check: 5666 Weight: 1.00 Name: ENSTTRP00000001956/1-490 Len: 494 Check: 7839 Weight: 1.00 Name: bmy_17538T0/1-490 Len: 494 Check: 6340 Weight: 1.00 Name: BACU017238/1-490 Len: 494 Check: 7052 Weight: 1.00 // 1 50 ENSBTAP00000013267/1-489 MQGRSLPFRV ATLVTGLLEC LGFAGVLFGW TSLVFVFKKQ HYFEELCELD ENSP00000378555/1-491 MAGQGLPLHV ATLLTGLLEC LGFAGVLFGW PSLVFVFKNE DYFKDLCGPD ENSTTRP00000001956/1-490 MQGQSLPLRV ATLLTGLLEC LGFAGVLFGW ASLVFVFKTE HFFEELREPN bmy_17538T0/1-490 MQGQSLPLRV ATLLTGLLEC LGFAGVLFGW ASLVFVFKTE HYFEELCEPN BACU017238/1-490 MQGQKLPLRV ATLLTGLLEC LGFAGVLFGW ASLVFVFKTE HYFEELCEPN 51 100 ENSBTAP00000013267/1-489 AGSLGNATGL DECRARDERF SLIFTLASFT INFMTFPTGY IFDRFKTTVA ENSP00000378555/1-491 AGPIGNATGQ ADCKAQDERF SLIFTLGSFM NNFMTFPTGY IFDRFKTTVA ENSTTRP00000001956/1-490 ARLMGNATGL DDCKAQDERF SLIFTLASFM NNFMTFPAGY IFDRFKTTVA bmy_17538T0/1-490 ARLMGNATGL DDCKAQDERF SLIFTLASFM NNFMTFPTGY IFDRFKTTVA BACU017238/1-490 ARLMGNATGL DDCKAQDERF SLIFTLASFM NNFMTFPTGY IFDRFKTTVA 101 150 ENSBTAP00000013267/1-489 RLIAIFLYTS ATLTIAFTSA DSAVLLFLAM PMLAVGGILF LITNLQIGNL ENSP00000378555/1-491 RLIAIFFYTT ATLIIAFTSA GSAVLLFLAM PMLTIGGILF LITNLQIGNL ENSTTRP00000001956/1-490 RLIAIFLYTS ATLTIAFISA DSAVLLFLAM PMLTVGGILF LITNLQIGNL bmy_17538T0/1-490 RLIAIFLYTS ATLTIAFISA DSAVLLFLAM PMLTVGGILF LITNLQIGNL BACU017238/1-490 RLIAIFLYTS ATLTIAFISA DSAVLLFLAM PMLTVGGILF LITNLQIGNL 151 200 ENSBTAP00000013267/1-489 FGKHRSTIIT MYNGAFDSSS AVFLIIKLLY EQGVTIKASF LFISVCSAWH ENSP00000378555/1-491 FGQHRSTIIT LYNGAFDSSS AVFLIIKLLY EKGISLRASF IFISVCSTWH ENSTTRP00000001956/1-490 FGKHR-TIIT MYNGAFDSSS AVFLIIKLLY EQGISLRASF IFISVCSAWH bmy_17538T0/1-490 FGKHRSTIIT MYNGAFDSSS AVFLIIKLLY EQGISLRASF IFISVCSAWH BACU017238/1-490 FGKHRSTIIT MYNGAFDSSS SVFLIIKLLY EQGISLRASF IFISVCSAWH 201 250 ENSBTAP00000013267/1-489 VGRTLLLMPR GHIPYPLPAN YRYGLCSRDS PPEEDKKEAG SEKLELQSKE ENSP00000378555/1-491 VARTFLLMPR GHIPYPLPPN YSYGLCPGNG TTKEEKETAE HENRELQSKE ENSTTRP00000001956/1-490 VGRTFLLMPR GHIPYPLPPN YSYGLCSGDG PREEEKKTAE SQKLEL-SEK bmy_17538T0/1-490 VGRTFLLMPR GHIPYPLPPN YSYGLCSGDG PGEEEKKTVE SPKLEL-SEE BACU017238/1-490 VGRTFLLMPR GHIPYPLPPN YSYGLCSGDG PREEEKKTVE SQKLEL-SEE 251 300 ENSBTAP00000013267/1-489 FPSPKKETPG ---QQQAPGS FWSHTFSPRF AWHVVWLSVI QLWHYLFIGT ENSP00000378555/1-491 FLSAKEETPG AG-QKQELRS FWSYAFSRRF AWHLVWLSVI QLWHYLFIGT ENSTTRP00000001956/1-490 FLSPKEEIPR PGQQQQEARS LWSYVFSRRF AWHLVWLSVI QLWHYLFIGT bmy_17538T0/1-490 LISPKKEIPR PG-QQQEPRS FRSYAFSRRF AWHLVWLSVI QLWHYLFIGT BACU017238/1-490 FISPKKEIPR AG-QQQEPRS FRSYAFSRRF AWHLVWLSVI QLWHYLFIGT 301 350 ENSBTAP00000013267/1-489 LNSLLNNLAS SDSAIVSTYT NAFAVTQFFG VLCAPWNGLL MDRLKHKYQE ENSP00000378555/1-491 LNSLLTNMAG GDMARVSTYT NAFAFTQF-G VLCAPWNGLL MDRLKQKYQK ENSTTRP00000001956/1-490 LNSLLSNLAS GDRVLVSTYT NAFAITQFFG VLCAPWNGLL MDRLKCKYQE bmy_17538T0/1-490 LNSLLSNLAS GDRVLVSTYT NAFAITQFFG VLCAPWNGLL IDRLKYKYQE BACU017238/1-490 LNSLLSNLAS GDRVLVSTYT NAFAITQFFG VLCAPWNGLL MDRLKYKYQE 351 400 ENSBTAP00000013267/1-489 EAKRTGAVAK AAALRSVVPS LTLTSLLSLG FAVCASIPVL PLQYATFILQ ENSP00000378555/1-491 EARKTGSSTL AVALCSTVPS LALTSLLCLG FALCASVPIL PLQYLTFILQ ENSTTRP00000001956/1-490 EARRTGSSAS AAALRSTVPS LVLTSVLCLG FALCASIPVL PLQYATFTLQ bmy_17538T0/1-490 EARKTGSSAS AAALCSTVPS LVLTSLLCLG FALCASIPVL PLQYATFILQ BACU017238/1-490 EARKTGSSAS AAALCSTVPS LVLTSLLCLG FALCASIPVL PLQYATFILQ 401 450 ENSBTAP00000013267/1-489 VVSRSFLYGC NAAFLTLAFP SEHFGKLFGL VMALSAVVSL LQFPLFTLIK ENSP00000378555/1-491 VISRSFLYGS NAAFLTLAFP SEHFGKLFGL VMALSAVVSL LQFPIFTLIK ENSTTRP00000001956/1-490 VINRSFLYGG NAAFLTLAFP SEHFGKLFGL VMALSAVVSL LQFPIFTLIK bmy_17538T0/1-490 VINRSFLYGG NAAFLTLAFP SEHFGKLFGL VMALSAVVSL LQFPIFTLIK BACU017238/1-490 VINRSFLYGG NAAFLTLAFP SEHFGKLFGL VMALSAVVSL LQFPIFTLIK 451 500 ENSBTAP00000013267/1-489 GPLQNDPLYV NLMLVLLTLL TFIHPFLVNR EC--QRKESP REVA ENSP00000378555/1-491 GSLQNDPFYV NVMFMLAILL TFFHPFLVYR ECRTW-KESP SAIA ENSTTRP00000001956/1-490 GPLQSDPFYV NVILVLVTLL TFVHPFLVYR ER--CQKESP PGVA bmy_17538T0/1-490 GPLQNDPFYV NVMLALVTLL TFVHPFLVYR EC--WQKEST PEVA BACU017238/1-490 GPLQNDPFYV NVMLALVTLL TFVHPFLVYR EC--WQKEST PGVA