KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:49:40 2014 Check: 00 .. Name: ENSP00000239938/1-543 Len: 546 Check: 6989 Weight: 1.00 Name: ENSBTAP00000013284/1-542 Len: 546 Check: 3785 Weight: 1.00 Name: ENSTTRP00000005188/1-509 Len: 546 Check: 4195 Weight: 1.00 Name: bmy_12145T0/1-537 Len: 546 Check: 1465 Weight: 1.00 Name: BACU004108/1-539 Len: 546 Check: 6266 Weight: 1.00 // 1 50 ENSP00000239938/1-543 MAAAKAEMQL MSPLQISDPF GSFPHSPTMD NYPKLEEMML LSNGAPQFLG ENSBTAP00000013284/1-542 MAAAKAEMQL MSPLQISDPF GSFPHSPTMD NYPKLEEMML LSNGAPQFLG ENSTTRP00000005188/1-509 MAAAKAEML- ---------- -----GPNME SYSLLNEMLN TA------LN bmy_12145T0/1-537 MAAAKAEMQL MSPLQISDPF GSFPHSPTMD NYPKLEEMML LSNGAPQFLG BACU004108/1-539 MAAAKAEMQL MSPLQISDPF GSFPHSPTMD NYPKLEEMML LSNGAPQFLG 51 100 ENSP00000239938/1-543 AAGAPEGSGS NSSSSSSGGG GGGGGGSNSS S---SSSTFN PQADTGEQPY ENSBTAP00000013284/1-542 AAGAPEGSSG S--SSGSSGG GGGGGGGSSS SNSNSSSAFN PQGEASEQPY ENSTTRP00000005188/1-509 ASGAPEGSGG N--SSSSGGG GGGGGGSNSN S---SGGAFN PQGEAGEQPY bmy_12145T0/1-537 ASGAPEGSGG N--SSSSGGG GGGGGGSNS- ----SGGAFN PQGEAGEQPY BACU004108/1-539 ASGAPEGRGS N--SSSSGGG GGGGGGSNSN S---SGGAFN PQGEAGEQPY 101 150 ENSP00000239938/1-543 EHLTAESFPD ISLNNEKVLV ETSYPSQTTR LPPITYTGRF SLEPAPNSGN ENSBTAP00000013284/1-542 EHLTAESFPD ISLNNEKVLV ETSYPSQTTR LPPITYTGRF SLEPAPNSGN ENSTTRP00000005188/1-509 EHLTAESFPD ITLNNEKVLV ETSYPSQTTR LPPITYTGRF SLEPAPNSGN bmy_12145T0/1-537 EHLTAESFPD ITLNNEKVLV ETSYPSQTTR LPPITYTGRF SLEPAPNSGN BACU004108/1-539 EHLTAESFPD ITLNNEKVLV ETSYPSQTTR LPPITYTGRF SLEPAPNSGN 151 200 ENSP00000239938/1-543 TLWPEPLFSL VSGLVSMTNP PASSSSAPSP AASSASASQS PPLSCAVPSN ENSBTAP00000013284/1-542 TLWPEPLFSL VSGLVSMTNP PATSSSASSP AASS-SASQS PPLSCAVQSN ENSTTRP00000005188/1-509 TLWPEPLFSL VSGLVSMTNP PATSSSASSP AASS-SASQS PPLSCAVQSN bmy_12145T0/1-537 TLWPEPLFSL VSGLVSMTNP PATSSSASSP AASS-SASQS PPLSCAVQSN BACU004108/1-539 TLWPEPLFSL VSGLVSMTNP PATSSSASSP AASS-SASQS PPLSCAVQSN 201 250 ENSP00000239938/1-543 DSSPIYSAAP TFPTPNTDIF PEPQSQAFPG SAGTALQYPP PAYPAAKGGF ENSBTAP00000013284/1-542 DSSPIYSAAP TFPTPNTDIF PEPQGQAFPG SAGPALQYPP PAYPGAKGGF ENSTTRP00000005188/1-509 DSSPIYSAAP TFPTPNTDIF PEPQGQAFPG SAGTALQYPP PAYPAAKGGF bmy_12145T0/1-537 DSSPIYSAAP TFPTPNTDIF PEPQGQAFPG SAGTALQYPP PAYPAAKGGF BACU004108/1-539 DSSPIYSAAP TFPTPNTDIF PEPQGQAFPG SAGTALQYPP PAYPAAKGGF 251 300 ENSP00000239938/1-543 QVPMIPDYLF PQQQGDLGLG TPDQKPFQGL ESRTQQPSLT PLSTIKAFAT ENSBTAP00000013284/1-542 QVPMIPDYLF PQQQGDLGLG TPDQKPFQGL ESRTQQPSLT PLSTIKAFAT ENSTTRP00000005188/1-509 QVPMIPDYLF PQQQGDLGLG TPDQKPFQGL ESRTQQPSLT PLSTIKAFAT bmy_12145T0/1-537 QVPMIPDYLF PQQQGDLGLG TPDQKPFQGL ESRTQQPSLT PLSTIKAFAT BACU004108/1-539 QVPMIPDYLF PQQQGDLGLG TPDQKPFQGL ESRTQQPSLT PLSTIKAFAT 301 350 ENSP00000239938/1-543 QSGSQDLKAL NTSYQSQLIK PSRMRKYPNR PSKTPPHERP YACPVESCDR ENSBTAP00000013284/1-542 QSGSQDLKAL NSTYQSQLIK PSRMRKYPNR PSKTPPHERP YACPVESCDR ENSTTRP00000005188/1-509 QSGSQDLKAL NTTYQSQLIK PSRMRKYPNR PSKTPPHERP YACPVESCDR bmy_12145T0/1-537 QSGSQDLKAL NTTYQSQLIK PSRMRKYPNR PSKTPPHERP YACPVESCDR BACU004108/1-539 QSGSQDLKAL NTTYQSQLIK PSRMRKYPNR PSKTPPHERP YACPVESCDR 351 400 ENSP00000239938/1-543 RFSRSDELTR HIRIHTGQKP FQCRICMRNF SRSDHLTTHI RTHTGEKPFA ENSBTAP00000013284/1-542 RFSRSDELTR HIRIHTGQKP FQCRICMRNF SRSDHLTTHI RTHTGEKPFA ENSTTRP00000005188/1-509 RFSRSDELTR HIRIHTGQKP FQCRICMRNF SRSDHLTTHI RTHTGEKPFA bmy_12145T0/1-537 RFSRSDELTR HIRIHTGQKP FQCRICMRNF SRSDHLTTHI RTHTGEKPFA BACU004108/1-539 RFSRSDELTR HIRIHTGQKP FQCRICMRNF SRSDHLTTHI RTHTGEKPFA 401 450 ENSP00000239938/1-543 CDICGRKFAR SDERKRHTKI HLRQKDKKAD KSVVASSATS SLSSYPSPVA ENSBTAP00000013284/1-542 CDICGRKFAR SDERKRHTKI HLRQKDKKAD KS-AASAATS SLPSYPSPVA ENSTTRP00000005188/1-509 CDICGRKFAR SDERKRHTKI HLRQKDKKAD KS-VASAATS SLPSYPSPVA bmy_12145T0/1-537 CDICGRKFAR SDERKRHTKI HLRQKDKKAD KS-VASAATS SLPSYPSPVA BACU004108/1-539 CDICGRKFAR SDERKRHTKI HLRQKDKKAD KS-VASAATS SLPSYPSPVA 451 500 ENSP00000239938/1-543 TSYPSPVTTS YPSPATTSYP SPVPTSFSSP GSSTYPSPVH SGFPSPSVAT ENSBTAP00000013284/1-542 TSYPSPVTTS YPSPATTSYP SPVPTSYSSP GSSTYPSPVH NGFPSPSVAT ENSTTRP00000005188/1-509 --------TS YPSPATTSYP SPVPTSYSSP GSSTYPSPVH SGFPSPSVAT bmy_12145T0/1-537 TSYPSPVTTS YPSPATTSYP SPVPTSYSSP GSSTYPSPVH SGFPSPSVAT BACU004108/1-539 TSYPSPVTTS YPSPATTSYP SPVPTSYSSP GSSTYPSPVH SGFPSPSVAT 501 550 ENSP00000239938/1-543 TYSSVPPAFP AQVSSFPSSA VTNSFSASTG LSDMTATFSP RTIEIC ENSBTAP00000013284/1-542 TYSSVPPAFP TQVSSFPSSA VTNSFSASTG LSDMTTTFSP RTIEIC ENSTTRP00000005188/1-509 TYSSVPPAFP AQVSSFPSSA VTNSFSASTG LSDMTTTFSP RTIEIC bmy_12145T0/1-537 TYSSVPPAFP AQVSSFPSSA VTNSFSASTG LSDMTTTFSP RTIEIC BACU004108/1-539 TYSSVPPAFP AQVSSFPSSA VTNSFSASTG LSDMATTFSP RTIEIC