KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:49:41 2014 Check: 00 .. Name: BACU007023/1-185 Len: 446 Check: 8416 Weight: 1.00 Name: bmy_13547T0/1-232 Len: 446 Check: 1811 Weight: 1.00 Name: ENSBTAP00000013285/1-446 Len: 446 Check: 6942 Weight: 1.00 Name: ENSP00000301659/1-445 Len: 446 Check: 6665 Weight: 1.00 // 1 50 BACU007023/1-185 ---------- ---------- ---------- ---------- ---------- bmy_13547T0/1-232 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013285/1-446 MTMFENVTRA LTRQLNPRGD LTPLDSLIDF KRFHPFCLVL RKRKSTLFWG ENSP00000301659/1-445 MTMFENVTRA LARQLNPRGD LTPLDSLIDF KRFHPFCLVL RKRKSTLFWG 51 100 BACU007023/1-185 ---------- ---------- ---------- ---------- ---------- bmy_13547T0/1-232 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013285/1-446 ARYVCTDYTF LDILEPGSSP SDPTDSGNFG FKNMLDARVE GEVDVPKTVK ENSP00000301659/1-445 ARYVRTDYTL LDVLEPGSSP SDPTDTGNFG FKNMLDTRVE GDVDVPKTVK 101 150 BACU007023/1-185 ---------- ---------- -------FSC HRKLAAEHPF LEEMRGRGEN bmy_13547T0/1-232 ---------- ---------- ---------- ---------- ---MRGRGEN ENSBTAP00000013285/1-446 VKGTAGLSRN STLEVQTLSV APKALETLHQ ERKLMAEHPF LEEMRRRGEN ENSP00000301659/1-445 VKGTAGLSQN STLEVQTLSV APKALETV-Q ERKLAADHPF LKEMQDQGEN 151 200 BACU007023/1-185 LYVVMEVVET AQEVT----- ---------- ---------- ---EAVTIPK bmy_13547T0/1-232 LYVVMEV--- ---------- ---------- -------GSI NHKEAVTIPK ENSBTAP00000013285/1-446 LYVVMEVVEA VQEVTLERAG RAEGCFSLPF FASLGLQGSV NHKEAVTIPK ENSP00000301659/1-445 LYVVMEVVET VQEVTLERAG KAEACFSLPF FAPLGLQGSI NHKEAVTIPK 201 250 BACU007023/1-185 GCILAFRVRQ LMVKGKDEWD IPHICNDNMQ TFPPG----- ---------- bmy_13547T0/1-232 GCVLAFRVRQ LMVKGKDEWD IPHICNDNMQ TFPPGKEPEE EKLTW----- ENSBTAP00000013285/1-446 GCVLAFRVRQ LMVKGKDEWD IPHIYNDNMH TFPPGEKPED EKFTLIQASD ENSP00000301659/1-445 GCVLAFRVRQ LMVKGKDEWD IPHICNDNMQ TFPPGEKSGE EKVILIQASD 251 300 BACU007023/1-185 ---------- ---------- ---------- ---------- ---------- bmy_13547T0/1-232 --EVHKDFRT LKEEFQRETR EVEKLSPERK SSLFSSLSKL LGKKKELEDL ENSBTAP00000013285/1-446 VGAVHEDFRT LKEEVQRETQ EVEKLSPEGK SSLLSSLSKL LGKKKELQDL ENSP00000301659/1-445 VGDVHEGFRT LKEEVQRETQ QVEKLSRVGQ SSLLSSLSKL LGKKKELQDL 301 350 BACU007023/1-185 ---------- ---------- ---------- ---------- -ELSEAQQKL bmy_13547T0/1-232 ELTLEGALDK GHEVTLEALP KDVLLSKEAM GAVLYFLGAL TELSEAQQKL ENSBTAP00000013285/1-446 ELTLEEALGK GHEETLEALP KNVLLSKGAM DAILYFLGAL AELSEAQQKL ENSP00000301659/1-445 ELALEGALDK GHEVTLEALP KDVLLSKEAV GAILYFVGAL TELSEAQQKL 351 400 BACU007023/1-185 LVQSMEKKIL PLQLKLMEST MEQNFLQDKE DVFPLQQELL SSLGEEELTL bmy_13547T0/1-232 LVQSMEKKIL PLQLKLVEST MEQNFLQDKE DVFPLQPELL SSLGEEELTL ENSBTAP00000013285/1-446 LVKSMEKKIL PVQLKLVEST MEQNFLQDKE GVFPLRPELL SSLGEEELTL ENSP00000301659/1-445 LVKSMEKKIL PVQLKLVEST MEQNFLLDKE GVFPLQPELL SSLGDEELTL 401 450 BACU007023/1-185 TEALVELSGL EVQRSGPQYT WDAVTLPCLC ALYAGLSLLQ LLTKAS bmy_13547T0/1-232 TEALVGLSGL EV-------- ---------- ---------- ------ ENSBTAP00000013285/1-446 TEALVGLSGL EVQRSGPQYT WDPDTLPRLC ALYAGLSLLQ LLTKAS ENSP00000301659/1-445 TEALVGLSGL EVQRSGPQYM WDPDTLPRLC ALYAGLSLLQ QLTKAS