KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:49:42 2014 Check: 00 .. Name: ENSP00000364140/1-1388 Len: 1441 Check: 9356 Weight: 1.00 Name: ENSBTAP00000013292/1-1386 Len: 1441 Check: 8999 Weight: 1.00 Name: ENSTTRP00000012952/1-1324 Len: 1441 Check: 731 Weight: 1.00 Name: bmy_01815T0/1-1054 Len: 1441 Check: 4765 Weight: 1.00 Name: BACU017573/1-1371 Len: 1441 Check: 2318 Weight: 1.00 // 1 50 ENSP00000364140/1-1388 MAPRRNNGQC WCLLMLLSVS TPLPAVTQTR GATETASQGH LDLTQLIGVP ENSBTAP00000013292/1-1386 MAPRRDA-QC WRLLLLLSTS ALLPGVTRTR SATESASRGP LDLTELVGVP ENSTTRP00000012952/1-1324 ---------- ---------- ---------- ----LASQGH LDLTELIGVP bmy_01815T0/1-1054 ---------- WPPLSL---- ---------- -PAELASQGH LDLTELIGVP BACU017573/1-1371 MAQRRDT-QC WRLLWLLSIS ALLPAVTRTR SATELASRGH LDLTELIGVP 51 100 ENSP00000364140/1-1388 LPSSVSFVTG YGGFPAYSFG PGANVGRPAR TLIPSTFFRD FAISVVVKPS ENSBTAP00000013292/1-1386 LPSSVSFVAG YGGFPAYSFG PGANVGRPAR TLIPSTFFRD FAISVRVKPS ENSTTRP00000012952/1-1324 LPSSVSFVTG YGGFPAYSFG PGANVGRPAR TLIPPTFFRD FAISVMAKPS bmy_01815T0/1-1054 LPSSVSFVTG YGGFPAYSFG PGANVGRPAR TLIPPTFFRD FAISVMAKPS BACU017573/1-1371 LPSSVSFVTG YGGFPAYSFG PGANVGRPAR TLIPPTFFRD FAISVMAKPS 101 150 ENSP00000364140/1-1388 STRGGVLFAI TDAFQKVIYL GLRLSGVEDG HQRIILYYTE PGSHVSQEAA ENSBTAP00000013292/1-1386 SPQGGVLFAI TDAFQKVIYL GLRLSGVEDG RQRVILYYTE PSSQVSREAA ENSTTRP00000012952/1-1324 SARGGVLFAI TDAFQKVIYL GLRLSGVEDG SQRVILYYTE PGSKVSHEAA bmy_01815T0/1-1054 SARGGVLFAI TDAFQKVIYL GLRLSGVEDG SQRVILYYTE PGSKVSREAA BACU017573/1-1371 SARGGVLFAI TDAFQKVIYL GLRLSGVEDG GQRVILYYTE PGSKVSREAA 151 200 ENSP00000364140/1-1388 AFSVPVMTHR WNRFAMIVQG EEVTLLVNCE EHSRIPFQRS SQALAFESSA ENSBTAP00000013292/1-1386 AFLVPVMTHK WNYFAVVVQG EEVTLLVDCE EHGRVPFPRS SQALTFEPSA ENSTTRP00000012952/1-1324 AFPVPVMTHR WNRFAMVVQG EEVTLLVDCE EHSHVPFPRS SRVLAFEPSA bmy_01815T0/1-1054 AFLVPVMTHR WNRFAMVVQG EEVTLLVDCE EHSHVPFPRS SRALAFEPSA BACU017573/1-1371 AFPVPVMTHR WNRFAMVVQG EEVTLLVDCE EHSHVPFPRS SRALAFEPSA 201 250 ENSP00000364140/1-1388 GIFMGNAGAT GLERFTGSLQ QLTVHPDPRT PEELCDPEES SASGETSGLQ ENSBTAP00000013292/1-1386 GIFVGNAGAT GLERFIGSIQ QLIIHPDPRT PEEMCEAEDS SASGETSGLQ ENSTTRP00000012952/1-1324 GIFVGNAGAT GLERFTGSIQ QLTIHRDPRT PEELCEAE-S SASGETSGLQ bmy_01815T0/1-1054 GIFIGNAGAT GLERFTGSIQ QLTVHPDPRT PEELCEAEES SASGETSGLQ BACU017573/1-1371 GIFVGNAGAT GLERFTGSIQ QLTVHPDPRT PEELCEAEES SASGEASGLQ 251 300 ENSP00000364140/1-1388 EADGVAEILE AVTYTQASPK EAKVEPINTP PTPSSPFEDM ELSGEPVPEG ENSBTAP00000013292/1-1386 ETDGVAEILE AVTYTQAPSK EAEVEPIHTP PTPSPASEDA ELSGEPVPEG ENSTTRP00000012952/1-1324 DTDRVAEILE AVTYTQAPSR EARVGPINTP PILSSPSEDA ELSGEPVPEG bmy_01815T0/1-1054 ETERVAEILE AITYTQAPLL SAEC------ ---------- -----LLPVG BACU017573/1-1371 ETERVAEILE AITYTQAPSR EARVGPINTP PTLSSPSEDA ELSGEPVPER 301 350 ENSP00000364140/1-1388 TLETTNMSII QHSSPKQGSG EILNDTLEGV HSVDGDPITD SGSGAGAFLD ENSBTAP00000013292/1-1386 TKETSNLSAD PHSSPEQGSG EILNDTLEAV QTVDGSPTAD TGSGDGVFLH ENSTTRP00000012952/1-1324 PQETTNVSAV PHSSPKQGSG EILNDTLETV DTVDGSPITD TGSGDGASLH bmy_01815T0/1-1054 S--------- ---------G EILNDTLETV DTVDGSPVTD TGSGDGAFLH BACU017573/1-1371 AQETTNMSAI PHSSPKQGSG EILNDTLETV DTVDGSPITD TGSADGAFLH 351 400 ENSP00000364140/1-1388 IAEE-----K NLAAT-AAGL AEVPISTAGE AEASSVPTGG PTLSMSTENP ENSBTAP00000013292/1-1386 VTEE-----V NLAATAAAGE AKVPISTAWE AEASSVPTGG LTLSMPIEDP ENSTTRP00000012952/1-1324 VTEE------ GLAATAAAGE AEVSISTARE AEAGSVPTEG LTLSMSTEHP bmy_01815T0/1-1054 VIEE------ ---------- ---------- ---------- ---------- BACU017573/1-1371 VTEEGPHMEE GVAATAAAGE AEVSISTARE AEAGSVPTEG LTLSMSTERP 401 450 ENSP00000364140/1-1388 EEGVTPGPDN EE-----RLA ATAAGEAEAL ASMPGEVEAS GVAPGELDLS ENSBTAP00000013292/1-1386 GEGVTLGAEN EE-----GSA ATAAGEAEEP VSIAREAEAS SVPTGGLTLP ENSTTRP00000012952/1-1324 GEGVTLGPDN EE-----GSA ATAAGEAEVP VSSAGEAEAS SVPTGGLTLS bmy_01815T0/1-1054 ---------- ---------- ---------- ---------- ---------- BACU017573/1-1371 GEGVTLGPDN EEXXXXXXXA ATAAGEAEAP VSSAGEAEAS SVPTGGLTLS 451 500 ENSP00000364140/1-1388 MSAQSLGEEA TVGPSSEDSL TTAAAATEVS LSTFEDEEAS GVPTDGLAPL ENSBTAP00000013292/1-1386 MPTQDPGEMV TLSPISEEGS TTAAAATDVP LGTFEEEEAS GVPTNDLAFI ENSTTRP00000012952/1-1324 MPTQDPGEGL TLGPISEESL TIATA--KVP LSTFEEEEAS GLPTDGLVPL bmy_01815T0/1-1054 ---------- --GPISEESL TIAAAAAKVP LSTFEEEEAS GFXTDGLVPL BACU017573/1-1371 MPTQDPGEGV TLGPISEESL TIAAAAAKVP LSTFEEEEAS GFPTDGLVPL 501 550 ENSP00000364140/1-1388 TATMAPERAV TSGPGDEEDL AAATTEEPLI TAGGEESGSP PPDGPPLPLP ENSBTAP00000013292/1-1386 TPTVASEQGV TSGPGD-EDL AAATTEEPLT AAGADTLGST PPEGPPLPLP ENSTTRP00000012952/1-1324 TPTAAPKQVV TSGPGD-EDL AAATTEQSLP TAGAEELGGA LPEGPPLPIP bmy_01815T0/1-1054 TPTAAPKQVV TS-------- ---------- ---------- ---------- BACU017573/1-1371 TPTAAPKQVV TSGPGD-EDL AAATTERPLP AAGAEELGGA LPEAPPLPIP 551 600 ENSP00000364140/1-1388 TVAPERWITP AQREHVGMKG QAGPKGEKGD AGEELPGPPE PSGPVGPTAG ENSBTAP00000013292/1-1386 SVAPESGAPP VSEDFTSHRG QSHGKGEKGE AEEGFPGPPG PAVPTEPTVE ENSTTRP00000012952/1-1324 TVAPERGVPP ---------- --------GE AGEGLPDPLG PA---GPTVG bmy_01815T0/1-1054 ---------- ---------- ---------- ---------R CC---GLII- BACU017573/1-1371 TVAPERGVPP ---------- --------GE AGEGLPGPLG PA---GPTVG 601 650 ENSP00000364140/1-1388 AEAEGSGLGW GSDVGSGSGD LVGSEQLLRG PPGPPGPPGL PGIPGKPGTD ENSBTAP00000013292/1-1386 VEAEGSGLGW GLDVSSGSGD LVHSEELLRG PPGPPGPPGL PGIPGKPGTD ENSTTRP00000012952/1-1324 VEAEGSSLGW GVDV--GSGD PVPSEELLRG PPGPPGPPGL PGIPGKPGTD bmy_01815T0/1-1054 ---------- -LDV------ ---------- ---------- ---------- BACU017573/1-1371 VEAEGSSLGW GLDV--GSGD PVRSEELLRG PPGPPGPPGL PGIPGKPGTD 651 700 ENSP00000364140/1-1388 VFMGPPGSPG EDGPAGEPGP PGPEGQPGVD GATGLPGMKG EKGARGPNGS ENSBTAP00000013292/1-1386 VFMGPPGSPG EDGPTGEPGP PGPEGKPGLD GASGLPGIKG EKGARGPNGS ENSTTRP00000012952/1-1324 VFMGPPGSPG EDGPAGEPGP PGPEGKPGLD GASGLPGMKG EKXXXXXXXX bmy_01815T0/1-1054 ---------- ---------P QGPEGKPGLD GASGLPGMKG EKGARGPNGS BACU017573/1-1371 VFTGPPGSPG EDGPAGEPGP PGPEGKPGLD GASGLPGMKG EKGARGPNGS 701 750 ENSP00000364140/1-1388 VGEKGDPGNR GLPGPPGKKG QAGPPGVMGP PGPPGPPGPP GPGCTMGLGF ENSBTAP00000013292/1-1386 VGEKGDPGNR GLPGPPGKTG QVGAPGVMGP PGPPGPPGPP GPGCTTGLGF ENSTTRP00000012952/1-1324 XXXXGDPGNR GLPGPPGKNG QVGAPGVMGP PGPPGPPGPR GPGCTMGLGF bmy_01815T0/1-1054 VGEKGDPGNR GLPGPPGKNG QVGAPGVMGP PGPPGPPGPQ GPGCAMGLGF BACU017573/1-1371 VGEKGDPGNR GLPGPPGKNG QVGAPGVMGP PGPPGPPGPQ GPGCAMGLGF 751 800 ENSP00000364140/1-1388 EDTEGSGSTQ LLNEPKLSRP TAAIGLKGEK GDRGPKGERG MDGASIVGPP ENSBTAP00000013292/1-1386 EDTEGSGSIR HLHEP-ISGP TASSGPKGEK GDRGPKGDRG MDGASIVGPP ENSTTRP00000012952/1-1324 EDTEGSGSIR LLQEPRISGP TASSGPKGEK GDQGPKGERG MDGASIVGPP bmy_01815T0/1-1054 E--------- ---------- ----GPKGEK GDQGPKGERG MDGASVVGPP BACU017573/1-1371 EDTEGSGSVR LLPEPGISGP TASSGPKGEK GDQGAKGERG MDGASVVGPP 801 850 ENSP00000364140/1-1388 GPRGPPGHIK VLSNSLINIT HGFMNFSDIP ELVGPPGPDG LPGLPGFPGP ENSBTAP00000013292/1-1386 GPRGPPGRIE VLSSSLTNIT QGFMNFSDIP ELVGPPGPEG MPGLPGFPGP ENSTTRP00000012952/1-1324 GPRGLPGRIE VLSSXXXXXX XXXXXXXXXX XXXXXXGPEG MPGLPGFQGP bmy_01815T0/1-1054 GPRGLPGRIE VLSSPLINIT HGFMNLSDIP ELVGP--PVC IHSCPR--GP BACU017573/1-1371 GPRGLPGRIE VLSSPLINIT HGFMNLSDIP ELVGPPGPEG MPGLPGFPGP 851 900 ENSP00000364140/1-1388 RGPKGDTGLP GFPGLKGEQG EKGEPGAILT EDIPLERLMG KKGEPGMHGA ENSBTAP00000013292/1-1386 RGPKGDTGVP GFPGLKGEQG EKGEPGAILT GDIPLERLRG QKGEPGEHGA ENSTTRP00000012952/1-1324 RGPKGDTGVP GFPGLKGEQG EKGEPGAILT GDIPLERLRA RKGEPGERGA bmy_01815T0/1-1054 RGPKGDTGVP GFPGLKGEQG EKGEPGAILT GDIPLERLRS QKGEPGERGA BACU017573/1-1371 RGPKGDTGVP GFPGLKGEQG EKGEPGAILT GDIPLERLRS QKGEPGERGA 901 950 ENSP00000364140/1-1388 PGPMGPKGPP GHKGEFGLPG RPGRPGLNGL KGTKGDPGVI MQGPPGLPGP ENSBTAP00000013292/1-1386 PGPMGPKGPP GHKGEFGLPG RPGRPGLNGL KGAKGDRGVM IPGPPGLPGP ENSTTRP00000012952/1-1324 PGPMGPKGPP GHKGEFGLPG RPGRPGLNGL KGAKGDRGVM MPGSPGLPGP bmy_01815T0/1-1054 PGPM------ ---------- --GRPGLNGL KGTKGDRAVM MPGPPGLPGP BACU017573/1-1371 PGQMGPRGPP GHKGEFGLPG RPGRPGLNGL KGTKGDRGVM MPGPPGLPGP 951 1000 ENSP00000364140/1-1388 PGPPGPPGAV INIKG----- ---------- ---------- ---------- ENSBTAP00000013292/1-1386 PGPPGPPGAV INIKG----- ---------- ---------- ---------- ENSTTRP00000012952/1-1324 PGPPGPPGAV INIKG----- ---------- ---------- ---------- bmy_01815T0/1-1054 PGPPGPPGAV IKIKGVSWQW GGGGDLKEEW GMAPDQPKLE SGVLIPSSHS BACU017573/1-1371 PGPPGPPGAV INIKG----- ---------- ---------- ---------- 1001 1050 ENSP00000364140/1-1388 ----AIFPIP VRPHCKMPVD TAHPGSPELI TFHGVKGEKG SWGLPGSKGE ENSBTAP00000013292/1-1386 ----AVFPVP VRPHCKTPVG TTYSGNSELI TFHGVKGEKG SWGLPGSKGE ENSTTRP00000012952/1-1324 ----AVFPVP VRPHCKTPVG TTYPGNSELI TFHGVKGEKG SWGLPGSKGE bmy_01815T0/1-1054 HFPQAVFPVP VRPHCKTPVG TTYPGNSELI TFHGVKGEKG SWGLPGSKGE BACU017573/1-1371 ----AVFPVP VRPHCKTPVG TTYPGNSELI TFHGVKGEKG SWGLPGSKGE 1051 1100 ENSP00000364140/1-1388 KGDQGAQGPP GPPLDLAYLR HFLNNLKGEN GDKGFKGEKG EKGDINGSFL ENSBTAP00000013292/1-1386 KGDQGPQGPP GPPVDPAYLR HFLNSLKGEN GDRGIKGEKG DSNSGFSGFS ENSTTRP00000012952/1-1324 KGDQGAQGPP GPAVDPTYLR HFLNSLKGEN RDKGIKGEKG DSD---SGFS bmy_01815T0/1-1054 KGDQGAQGPP GPPVDPTYLR HFLNSLKGEN RDRGIKGEKG DSD---SGFS BACU017573/1-1371 KGDQGAQGPP GPPVDPAYLR HFLNSLKGEN RDRGIKGEKG DSD---SGFS 1101 1150 ENSP00000364140/1-1388 MSGPPGLPGN PGPAGQKGET VVGPQGPPGA PGLPGPPGFG RPGDPGPPGP ENSBTAP00000013292/1-1386 VSGPPGLPGS PGLVGQKGEA VVGPQGPPGA PGLPGPPGFG RPGSPGPPGP ENSTTRP00000012952/1-1324 VSGPPGLPGS PGLEGQKGET IIGPQGPPGA PGLPGPPGFG RPGSPGPQGP bmy_01815T0/1-1054 ESGPPGLPGS PGLAGQKGET IVGPQGPPGV PGLPGPPGFG RPGSPGPPGP BACU017573/1-1371 ESGPPGLPGS PGLAGQKGET IVGPQGPPGA PGMPGPPGFG RPGSPGPPGP 1151 1200 ENSP00000364140/1-1388 PGPPGPPAIL GA---AVALP GPPGPPGQPG LPGSRNLVTA FSNMDDMLQK ENSBTAP00000013292/1-1386 PGPPGPPAIL GA---AVALP GPPGPPGQPG LPGSRNLVTT FSNMDDMLQK ENSTTRP00000012952/1-1324 PGPPGPPAIL GA---AVAIP GPPGPPGQPG LPGSRNLVTA FSNMADMLQK bmy_01815T0/1-1054 PGPPGPPAIL GAGQYSVAIP GPPGPPGQPG LPGSRNLVTA FSNMADMLQK BACU017573/1-1371 PGPAGPPAIL GA---AVAIP GPPGPPGQPG LPGSRNLVTA FSSMADMLQK 1201 1250 ENSP00000364140/1-1388 AHLVIEGTFI YLRDSTEFFI RVRDGWKKLQ LGELIPIPAD SPPPPALSSN ENSBTAP00000013292/1-1386 AHLVIEGTFI YLKDSTEFFI RVRDGWKKLQ LGELIPIPDD SPPPPALSSN ENSTTRP00000012952/1-1324 AHLVIEGTFI YLKDSTEFFI RVRDGWKKLQ LGELIPIPDD SPPPPALSSN bmy_01815T0/1-1054 AHLVIEGTFI YLRDSTEFFI RVRDGWKKLQ LGELIPIPDD SPPPPALSSN BACU017573/1-1371 AHLVIEGTFI YLRDSTEFFI RVRDGWKKLQ LGELIPIPDD SPPPPALSSN 1251 1300 ENSP00000364140/1-1388 PHQLLPPPNP ISSANYEKPA LHLAALNMPF SGDIRADFQC FKQARAAGLL ENSBTAP00000013292/1-1386 PHQPQLSLTS ISNVNYGRPA LHLVALNTPF SGDIRADFQC FQQARAAGLL ENSTTRP00000012952/1-1324 SHHLQLPLAS ISSANYDRPA LHLVALNTPF SGDIRADFQC FQQARAAGLL bmy_01815T0/1-1054 ---------- ---------- LHLVALNTPF SGDIRADFQC FQQARAAGLL BACU017573/1-1371 SHQLQLPLTS VSSVNYDSPA LHLVALNTPF SGDIRADFQC FQQARAAGLL 1301 1350 ENSP00000364140/1-1388 STYRAFLSSH LQDLSTIVRK AERYSLPIVN LKGQVLFNNW DSIFSGHGGQ ENSBTAP00000013292/1-1386 STYRAFLSSH LQDLSTVVRK AERYSLPIVN LKGQVLFNNW DSIFSGHGGQ ENSTTRP00000012952/1-1324 STYEAFLSSH LQDLSAVVRK AERYSLPIVN LKGQVLFDNW DSIFSGHGGQ bmy_01815T0/1-1054 STYEAFLSSH LQDLSTVVRK EERYSLPIVN LKGQVLFNNW DSIFSGHGGQ BACU017573/1-1371 STYEAFLSSH LQDLSTVVRK EERYSLPIVN LKGQVLFNNW DSIFSGHGGQ 1351 1400 ENSP00000364140/1-1388 FNMHIPIYSF DGRDIMTDPS WPQKVIWHGS SPHGVRLVDN YCEAWRTADT ENSBTAP00000013292/1-1386 FNTHIPIYSF DGRDVMTDPS WPQKVIWHGS STHGVRLVDQ YCEAWRTADM ENSTTRP00000012952/1-1324 FNTHVPIYSF DGRDVMTDPS WPQKVVWHGS STHGVRLVDQ YCEAWRTADM bmy_01815T0/1-1054 FNTHVPIYSF DGRDVMTDPS WPQKVVWHGS STHGVRLVDQ YCEAWRTADM BACU017573/1-1371 FNTHVPIYSF DGRDVMTDPS WPQKVVWHGS STHGVRLVDQ YCEAWRTADM 1401 1450 ENSP00000364140/1-1388 AVTGLASPLS TGKILDQKAY SCANRLIVLC IENSFMTDAR K ENSBTAP00000013292/1-1386 AVMGLASPLN TGKILDQKAY SCANRLIVLC IENSFMTDAR K ENSTTRP00000012952/1-1324 AVMGLASPLS TGKILDQKAY SCANRLIVLC IENSFMTDVR K bmy_01815T0/1-1054 AVMGLASPLS TGKILDQKAY SCANRLIVLC IENSFMTDVR K BACU017573/1-1371 AVMGLASPLS TGKILDQKAY SCANRLIVLC IENSFMTDVR K