KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:49:44 2014 Check: 00 .. Name: ENSP00000287647/1-1471 Len: 1474 Check: 8676 Weight: 1.00 Name: ENSBTAP00000013299/1-1449 Len: 1474 Check: 5147 Weight: 1.00 Name: ENSTTRP00000007148/1-1450 Len: 1474 Check: 8651 Weight: 1.00 Name: bmy_00437T0/1-1356 Len: 1474 Check: 8813 Weight: 1.00 Name: BACU015167/1-1158 Len: 1474 Check: 6165 Weight: 1.00 // 1 50 ENSP00000287647/1-1471 MVSKRRLSKS EDKESLTEDA SKTRKQPLSK KTKKSHIANE VEENDSIFVK ENSBTAP00000013299/1-1449 MISKRKLSVS ENKESLTEDA SEARKQPLSK KTKKSHVHNE VEENDNVFVK ENSTTRP00000007148/1-1450 MVSKRRLPTS EDKENLTEDA SKARKQPLSK KTKKSHVHNE VEENNSVFVK bmy_00437T0/1-1356 ---------- ---MGNNGFS AEARKQPLSK KTKKSHVHNE VEENDSVFVK BACU015167/1-1158 ---------- ---MSNNGFS AEARKQPLSK KTKKSHVHNE VEENDSVFVK 51 100 ENSP00000287647/1-1471 LLKISGIILK TGESQNQLAV DQIAFQKKLF QTLRRHPSYP KIIEEFVSGL ENSBTAP00000013299/1-1449 FLKASGITLK TGESQNQLAV DQIVFQKKLF QTLRKHPSYP TIIEEFVSGL ENSTTRP00000007148/1-1450 LLKTSGITLK TGENQNQLAV DQIIFQRKLF QTLRKHPSYP KIIEEFVSGL bmy_00437T0/1-1356 LLKTSGITLK TGESQNQLAV DQIVFQKKLF QTLRKHPSYP KIVEEFVSGL BACU015167/1-1158 LLKTSGITLK TGESQNQLAV DQIVFQKKLF QTLRKHPSYP KIVEEFVSGL 101 150 ENSP00000287647/1-1471 ESYIEDEDSF RNCLLSCERL QDEEASMGAS YSKSLIKLLL GIDILQPAII ENSBTAP00000013299/1-1449 ESYIEDQDSF RNCLLSCERV QDEETSTGTS YCKSLIKLLL GIDTLQPAII ENSTTRP00000007148/1-1450 ESYIEDQNSF RNCLLSCEHL QDEEASMGTS YCKSLIKLLL GIDILQPAII bmy_00437T0/1-1356 ESYIEDQDSF RNCLLSCERL QDEEASMGTS YCKSLIKLLL GIDILQ---- BACU015167/1-1158 ESYIEDQDSF RNCLLSCERL QDEEASMGTS YCKSLIKLLL GIDLLQKGYV 151 200 ENSP00000287647/1-1471 KTLFEKLPEY FFENKNSDEI NIPRLIVSQL KWLDRVVDGK DLTTKIMQLI ENSBTAP00000013299/1-1449 KVLFEKLPEF LFEKVNSDGI SMPRLIINQL KWLDRVVDSK DLTTKIMQLI ENSTTRP00000007148/1-1450 NILFEKLPEF IFKNVNSDGL SMPRLIINQL KWLDRVVDSK DLTTKIMQLI bmy_00437T0/1-1356 ---------- ---------V RLCHFFCEHL MDVICGVCPS DLTTKIMQLI BACU015167/1-1158 ----PDFSSI LTFSVNSDGL NMPRLIINQL KWLDRVVDSK DLTTKIMQLI 201 250 ENSP00000287647/1-1471 SIAPENLQHD IITSLPEILG DSQHADVGKE LSDLLIENTS LTVPILDVLS ENSBTAP00000013299/1-1449 SVAPLCLQHD FVISLPEILG DSQHADVGKE LSDLLTENTL LTVPILDVLS ENSTTRP00000007148/1-1450 SIAPVYLQHD FVTSLPEILG DSQHADVGKE LSDLLTENTL LTVPILDVLS bmy_00437T0/1-1356 SIAPVYLQHD FVTSLPEILG DSQHADVGKE LSDLLTENTL LTVPILDVLS BACU015167/1-1158 SIAPVYLQHD FVTSLPEILG DSQHADVGKE LSDLLTENTL LTVPILDVLS 251 300 ENSP00000287647/1-1471 SLRLDPNFLL KVRQLVMDKL SSIRLEDLPV IIKFILHSVT AMDTLEVISE ENSBTAP00000013299/1-1449 SLQLESKLLT KVRQLVMGKL SSVSLDDLPV IIKFILHSVT PTDALEVISE ENSTTRP00000007148/1-1450 SLQLEPKLLT KVRQLVMGKL SSVMLDDLPM IIKFILHSIR ATDALEVISE bmy_00437T0/1-1356 SLRLEPKLLT KVRQLVMGKL SSVTLDDLPM IIKFILHSIT ATDALEVISE BACU015167/1-1158 SLRLEPKLLT KVRKLVMGKL SSVMLDDLPM IIKFILHSIT ATDALEVISE 301 350 ENSP00000287647/1-1471 LREKLDLQHC VLPSRLQASQ VKLKSKGRAS SSGNQESSGQ SCIILLFDVI ENSBTAP00000013299/1-1449 LREKLDLQHC ILPSQFQVSL SRLRNKGQTS FSGNQENSSQ DCVTLLFDVI ENSTTRP00000007148/1-1450 LREKLDLQHC ILPSLLQASQ SKVKNKGQKS SSGNQENSGQ DCVILLFDVI bmy_00437T0/1-1356 LRENLDLQHC ILPSWLQASQ SKLKNKGQTS SSGNQENSGQ DCVILLFDVI BACU015167/1-1158 LRENLDLQHC ILPSWLQASQ SKLKNKGQTS SSGNQENSGQ DCVILLFDVI 351 400 ENSP00000287647/1-1471 KSAIRYEKTI SEAWIKAIEN TASVSEHK-V FDLVMLFIIY STNTQTKKYI ENSBTAP00000013299/1-1449 KSAIRYEKII SEAWIKAIER TPSEAEHK-I FDLAMLLIIY STNTQTKKYI ENSTTRP00000007148/1-1450 KSAVRYEKII SEAWIKAIEN TTSVSEHK-V LDLAMLFIIY STNTQTKKCI bmy_00437T0/1-1356 KSAVRYEKIV SEAWIKAIEN TTSVSEHK-I LDLAMLFIIH STNTQTKKYI BACU015167/1-1158 KSAVRYEKIV SEAWIKAIEN TTSVSEHKQI LDLAMLFIIY STNTQTKKYI 401 450 ENSP00000287647/1-1471 DRVLRNKIRS GCIQEQLLQS TFSVHYLVLK DMCSSILSLA QSLLHSLDQS ENSBTAP00000013299/1-1449 ERVLRNKIRS GCFEEDLLRG TFYIHYLVLK DICPSILSLA QSLLNSLDQS ENSTTRP00000007148/1-1450 ERVLRNKIRS GCFQEQLLQS TFYIHYLVLK DICPSILSLA QSLLHSLDQS bmy_00437T0/1-1356 ERVLRNKIRS GCFEEQLLQS TFHIHHVVLK DICPSILSLA QSLLHSLDQS BACU015167/1-1158 ERVLRNKIRS GCFEEQLLQS TFYVHYV--- ---------- ---------- 451 500 ENSP00000287647/1-1471 IISFGSLLYK YAFKFFDTYC QQEVVGALVT HICSGNEAEV DTALDVLLEL ENSBTAP00000013299/1-1449 IILFGSLLYR YSFMFFDTYC QQEVIGALVT HVCSGNEVEV DAALDVLLEL ENSTTRP00000007148/1-1450 IILFGSLLYK YAFNFFDTYC QQEVIGALVT HICSGNEAEV DTALDVLLDL bmy_00437T0/1-1356 IILFGSLVYK YAFIFFDTYC QQEVIGALVT HICSGNEAEV DTALDVLLEL BACU015167/1-1158 ---------- ---------- --EVIGALVT HICSGNEAEV DTALDVLLEL 501 550 ENSP00000287647/1-1471 VVLNPSAMMM NAVFVKGILD YLDNISPQQI RKLFYVLSTL AFSKQNEASS ENSBTAP00000013299/1-1449 VVVSPSAMRL NAVFVKGILD YLDNMSPQQI RKLFCVLSTL AFSKEHEANS ENSTTRP00000007148/1-1450 VVLNPSAMRL NAVFVKGILD YLDNMSPQQI RKLFYILSTL AFSKQHEASS bmy_00437T0/1-1356 VVLNPSAMRL NAVFVKGILD YLDNMSPQQI RKLFYILSTL AFSKQHEASS BACU015167/1-1158 VLLNPSAMRL NAVFVKGILD YLGNMSPQQI RKLFYILSTL AFSKQHEASS 551 600 ENSP00000287647/1-1471 HIQDDMHLVI RKQLSSTVFK YKLIGIIGAV TMAGIMAADR SESPSLTQER ENSBTAP00000013299/1-1449 HIQDDMHLVI RKQLSSTVFK YKLIGIIGAV TMAGVMAADR SRSSNLTPGS ENSTTRP00000007148/1-1450 HIQDDMHLVI RKQLSSTMFK YKLTGIIGAV TMAGIIAADR SRSSSLTPGR bmy_00437T0/1-1356 HI-------- --QLSSTMFK YKLIGIIGAV TMAGIIAADR KH---WQPKG BACU015167/1-1158 HIQDDMHLVI RKQLSSTMFK YKLIGIIGAV TMAGIIAADR KH---WQPKG 601 650 ENSP00000287647/1-1471 ANLSDEQCTQ VTSLLQLVHS CSEQSPQASA LYYDEFANLI QHEKLDPKAL ENSBTAP00000013299/1-1449 GELSSEQCTQ VTSLLQLVHS CSEQSPQASG LYYDEFANLI HGRRLAPEVL ENSTTRP00000007148/1-1450 GDLISEQCTQ VTSLLQLVHS CSEQSPQASA LYYDEFANLI QGRKLAPQVL bmy_00437T0/1-1356 GTILSLRLLQ VTSLLQLVHS CSEQSPQASA LYYDEFANLI QGRKLAPKVL BACU015167/1-1158 WTILSLRLLQ VTSLLQLVHS CSEQSPQASA LYYDEFANLI QGRKLAPKVL 651 700 ENSP00000287647/1-1471 EWVGHTICND FQDAFVVDSC VVPEGDFPFP VKALYGLEEY DTQDGIAINL ENSBTAP00000013299/1-1449 EWLGQTIFND FQDAFVLDYI GKEIFDYPFP VKALYGLEDY DSCDGIVINL ENSTTRP00000007148/1-1450 XXXXXXXXXX XXXXXXXXXX XXXXXDYPFP VKALYGLEDY DSCDGIAINL bmy_00437T0/1-1356 ---------- --DAFVVDIC VVPEGDYPFP VKALYGLEDY DSCDGIAINL BACU015167/1-1158 EWAGQTIFND FQDAFVVDIC VVPEGDYPFP VKALYGLEDY DSCDGIAINL 701 750 ENSP00000287647/1-1471 LPLLFSQDFA KDGGPVTSQE SGQKLVSPLC LAPYFRLLRL CVERQHNGNL ENSBTAP00000013299/1-1449 LPLLFSQDFV KDGSTRTSQE SDQKLVSPLC LAPYFRLLRL CVDRQHNGNL ENSTTRP00000007148/1-1450 LPLLFSRDFV KDGGRLTSQE SDQKLVSPLC LAPYFRLLRL CVDRQHNGNL bmy_00437T0/1-1356 LPLLFSQDFV KDGGRLTSQE SDQKLVSPLC LAPYFRLLRL CVDRQHNGNL BACU015167/1-1158 LPLLFSQDFV KDG------- ---------- ---------- ---------- 751 800 ENSP00000287647/1-1471 EEIDGLLDCP IFLTDLEPGE KLESMSAKER SFMCSLIFLT LNWFREIVNA ENSBTAP00000013299/1-1449 EEIDGLLDCP IFLTDLEPGE RLQSMSVKER SFLCSLIFLT LNWFREVVNA ENSTTRP00000007148/1-1450 EEIDGLLDCP IFLTDLEPGE RLESMSVKER SFICSLIFLT LNWFREVVNA bmy_00437T0/1-1356 EEIDGLLDCP IFLTDLDPGE RLESMSVKER SFICSLIFLT LNWFREVVNA BACU015167/1-1158 -------DCP IFLTDLEPGE RLESMSVKER SFICSLIFLT LNWFREVVNA 801 850 ENSP00000287647/1-1471 FCQETSPEMK GKVLTRLKHI VELQIILEKY LAVTPDYVPP LGNFDVETLD ENSBTAP00000013299/1-1449 FCRQKLPEMK GKVLTRLKHI VELQQLLEKH LAVTPDYVPP LANFDLETLE ENSTTRP00000007148/1-1450 FCRQTLPEMK VKVLTRLKHI VELQQLLEKH LAVTPDYVPP LANFDLETSE bmy_00437T0/1-1356 FCRQTLPEMK VKVLTRLKHI VELQQLLEKH LAVTPDYVPP LANFDLEASE BACU015167/1-1158 FCRQTLPEMK VKVLTRLKHI VELQQLLEKH LAVTPDYVPP LANFDLETSE 851 900 ENSP00000287647/1-1471 ITPHTVTAIS AKIRKKGKIE -RKQKTDGSK TSSSDTLSEE KNSECDPTPS ENSBTAP00000013299/1-1449 ETPHTSTAV- AKIRMKGKTG GKKRKADGGK TSSPDVLSKD DNSECDPTLA ENSTTRP00000007148/1-1450 VTPHTSTAVS AKIRIQGNLG -RKRKADGKT SSD---LSKE D-SEC-PAPS bmy_00437T0/1-1356 VTPHTSTAVS AKIRIQGNLG ---------- ---------- ---------- BACU015167/1-1158 VTPHTSAAVS AKIRIQGNLG GRKRKADGSK ISSPDPLSKE DNSECDPAPS 901 950 ENSP00000287647/1-1471 HRGQLNKEFT GKEEKTSLLL HNSHAFFREL DIEVFSILHC GLVTKFILDT ENSBTAP00000013299/1-1449 ERSQQEKEFR GKEEKTSVSL QNYHAFFREM DIEVFSILRC GLVTKFILDT ENSTTRP00000007148/1-1450 DRSQLEKEFR GKEEKTSVSL QNYHAFFREL DLEVFSILHC GLVTKFILDT bmy_00437T0/1-1356 ---SLQQEFR GKEEKTSVSL QNYHAFLREL DLEVFSILHC GLVAKFILDT BACU015167/1-1158 DRSPLEKEFR GKEEKTSVSL QNYHAFFREL DLEVFSILHC GLVAKFILDT 951 1000 ENSP00000287647/1-1471 EMHTEATEVV QLGPPELLFL LEDLSQKLES MLTPPIARRV PFLKNKGSRN ENSBTAP00000013299/1-1449 EMHTEAAEVV QLQPPELLFL LEDLTQKLDN MLTP-VARRV PFLKSKGNRN ENSTTRP00000007148/1-1450 EMHTEATEVV QL--PELLLL ---RCEKLEN MLTL-VNRRV PFLKSKGNRN bmy_00437T0/1-1356 EMHTEATEVV QLQPPELLFL LEDLAQKLEN MLTPSVTRRF PFLKSKGNRN BACU015167/1-1158 EMHTEATEVV QLQPPELLFL LEDLAQKLEN MLTPSVTRRF PFLK------ 1001 1050 ENSP00000287647/1-1471 IGFSHLQQRS AQEIVHCVFQ LLTPMCNHLE NIHNYFQCLA AENHGVVDGP ENSBTAP00000013299/1-1449 IGFSHLHQRS ASEIAFRVVQ LLNPMCNHLE NIHNYFQCLT AENHGVVDGP ENSTTRP00000007148/1-1450 IGFSHLHQRS ASEIAHSVVQ LLSPMCNHLE NIHNYFQCLT AKNHDVVDGP bmy_00437T0/1-1356 IGFSHLHQRS ASEIAHSVVQ LLSPMCNHLE NIHNYFQCLT AKNHGVVDGP BACU015167/1-1158 ---------- ---------- ---------- -------CLT AKNHGVVDGP 1051 1100 ENSP00000287647/1-1471 GVKVQEYHIM SSCYQRLLQI FHGLFAWSGF SQPENQNLLY SALHVLSSRL ENSBTAP00000013299/1-1449 GIKGQEYHTM SSCYLRLLQI FHGLFAWSGF CQLQNNNLLY SALGILTSRL ENSTTRP00000007148/1-1450 GIKGQEYDIM SSCYQRLLQI LHGLFAWNGF FQPENINLLY SALEVLANRL bmy_00437T0/1-1356 GIKGQEYHIM SSCYQRLLQI LHGLFAWNGF FQPENTNLLY SALEVLTNRL BACU015167/1-1158 GIKGQEYHIM SSCYQRLLQI LHGLFAWNGF FQPENTNLLY SALEVLTNRL 1101 1150 ENSP00000287647/1-1471 KQGEHSQPLE ELLSQSVHYL QNFHQSIPSF QCALYLIRLL MVILEKSTAS ENSBTAP00000013299/1-1449 KPGERDQSME ELLRQSFHYL QNFHASIPSF QCALYLLRLL MVILEKSAAP ENSTTRP00000007148/1-1450 KPGEPDQALE ELLSQSFHYL QNFHLSIPSF QCALYLIRLL MVILEKSTAP bmy_00437T0/1-1356 KPGEPDQALE ELLSQSFHYL QNFRLSIPSF QCALYLIRLL MVILEKSTAP BACU015167/1-1158 KPGEPDQALE ELL------- ---------- ---------- ---------- 1151 1200 ENSP00000287647/1-1471 AQNKEKIASL ARQFLCRVWP SGDKEKSNIS NDQLHALLCI YLEHTESILK ENSBTAP00000013299/1-1449 AENKRQIASL AKQFLCRVWP SGEKERSSIP NDQLQALLGI YLEHTDSVLK ENSTTRP00000007148/1-1450 TQNKGKIASL ARQFLFRVWP SGEKEKSGIP NDQLQALLSI YLEHTDSVLK bmy_00437T0/1-1356 TQNKGKIASL ARQFLCRVWP SGEKEKSGIP NDQLEALLSI YLEHTDGVLK BACU015167/1-1158 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000287647/1-1471 AIEEIAGVGV PELINSPKDA SSSTFPTLTR HTFVVFFRVM MAELEKTVKK ENSBTAP00000013299/1-1449 AIEEIAGVGV PELINSPKEA SSSTFPTLTW TTFVIFFRVM MAELEKTVKG ENSTTRP00000007148/1-1450 AIEEIAGVGV PELISSPKEA SSSTFPTLTR HTFVIFFHVM MAELEKTVKG bmy_00437T0/1-1356 AIEEIAGVGV PELITSPKEA SSSSFPTLTR HTFVIFFRVM MAELEKTVKG BACU015167/1-1158 ---------- ---------- ---------R HTFVIFFRVM MAELEKTVKG 1251 1300 ENSP00000287647/1-1471 IEPGTAADSQ QIHEEKLLYW NMAVRDFSIL INLIKVFDSH PVLHVCLKYG ENSBTAP00000013299/1-1449 LQAGTAADSQ QIHEEKLLYW NMAVRDFSIL INLIKVFDSR PVLFACLKYG ENSTTRP00000007148/1-1450 LQAGTAADSE QIHEEKLLYW NMAVRDFSIL INLIKVFDSR PVLHVCLKYG bmy_00437T0/1-1356 LQAGTAADSE RIHEEKLLYW NMAVRDFSIL INLIKVFDSR PVLHVCLKYG BACU015167/1-1158 LQAGTAADSE RIHEEKLLYW NMAVRDFSIL INLIKVFDSR PVLHVCLKYG 1301 1350 ENSP00000287647/1-1471 RLFVEAFLKQ CMPLLDFSFR KHREDVLSLL ETFQLDTRLL HHLCGHSKIH ENSBTAP00000013299/1-1449 RLFVEAFLKQ CMPLLDFSFR KHREDVLSLL ETFQLSTRLL HHLCGHSKIH ENSTTRP00000007148/1-1450 RLFVEAFLKQ CMPLLDFSFR KHREDVLSLL ETFQLNTRLL HHLCGHSKIH bmy_00437T0/1-1356 RLFVEAFLKQ CMPLLDFSFR KHREDVLSLL ETFQLNTRLL HHLCGHSKIH BACU015167/1-1158 RLFVEAFLKQ CMPLLDFSFR KHR------- ---------- --------IH 1351 1400 ENSP00000287647/1-1471 QDTRLTQHVP LLKKTLELLV CRVKAMLTLN NCREAFWLGN LKNRDLQGEE ENSBTAP00000013299/1-1449 QDTKLTKHVP LLKKTLELLV CRVKAMLILN NCREAFWLGN LKNRDLQGEE ENSTTRP00000007148/1-1450 QDTKLTKHVP LLKKTLELLV CRVKAMLILN NCREAFWLGN LKNRDLQGEE bmy_00437T0/1-1356 QDTKLTRHVP LLKKTLELLV CRVKAMLILN NCREAFWLGN LKNRDLQGEE BACU015167/1-1158 QDTKLTRHVP LLKKTLELLV CRVKAMLILN NCREAFWLGN LKNRDLQGEE 1401 1450 ENSP00000287647/1-1471 IKSQNSQEST ADESEDDMSS QASKSKATEV SLQNPPESGT DGCILLIVLS ENSBTAP00000013299/1-1449 IISQNSQEST ANESEGDTSF QGAEQTSQGG --EEDKASDG EKE------- ENSTTRP00000007148/1-1450 IISQNSQEST ADESEDDTSS QVSKSKGTEV CLKAPEGIDG REC------- bmy_00437T0/1-1356 IISQNSQEST ADENEDDTSS QVSKSKGTED S-GEDEASDG EKE------- BACU015167/1-1158 IISQNSQESA ADESEDDASS QVSKSKGTED S-GEDEASDG AKE------- 1451 1500 ENSP00000287647/1-1471 WWSRTLPTYV YCQMLLCPFP FPP- ENSBTAP00000013299/1-1449 --RESDEDES DDD------- ---- ENSTTRP00000007148/1-1450 ----RIFPAF YNQILLCPSP FPPK bmy_00437T0/1-1356 ----QESDES DDD------- ---- BACU015167/1-1158 ----QESDES DDD------- ----