KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:49:45 2014 Check: 00 .. Name: ENSTTRP00000003211/1-623 Len: 743 Check: 3650 Weight: 1.00 Name: ENSBTAP00000013304/1-660 Len: 743 Check: 3131 Weight: 1.00 Name: ENSP00000004531/1-698 Len: 743 Check: 4564 Weight: 1.00 Name: bmy_00273T0/1-525 Len: 743 Check: 8537 Weight: 1.00 Name: BACU005184/1-740 Len: 743 Check: 7555 Weight: 1.00 // 1 50 ENSTTRP00000003211/1-623 --------MR KEVGYSSEES -TQGFVGMPA P----SSYLP LPSS---MIP ENSBTAP00000013304/1-660 ---------- ---------- ---------- ---------- -------MIP ENSP00000004531/1-698 -------MKI ETSGYNSDKL ICRGFIGTPA PPVCDSKFLL SPSSDVRMIP bmy_00273T0/1-525 ---------- ---------- ---------- ---------- -------MIP BACU005184/1-740 MSVPGLWIFN PESGVWSGYL WLGGRKDSAV RRADSLARRC GQVAIFRMIP 51 100 ENSTTRP00000003211/1-623 CRAALSFARC LIRRKIVTLD SLEDTKLCRC LSTMDLIALG VGSTLGAGVY ENSBTAP00000013304/1-660 CRAALSFARC LVRRKIVTLD SLEDTKLCRC LSTMDLIALG VGSTLGAGVY ENSP00000004531/1-698 CRAALTFARC LIRRKIVTLD SLEDTKLCRC LSTMDLIALG VGSTLGAGVY bmy_00273T0/1-525 CRAALSFARC LIRRKIVTLD SLEDTKLCRC LSTMDLIALG VGSTLGAGVY BACU005184/1-740 CRAALSFARC LIRRKIVTLD SLEDTKLCRC LSTMDLIALG VGSTLGAGVY 101 150 ENSTTRP00000003211/1-623 VLAGEVAKAD SGPSIVVSFL IAALASVMAG LCYAEFGARV PKTGSAYLYT ENSBTAP00000013304/1-660 VLAGEVAKAD SGPSIVVSFL IAALASVMAG LCYAEFGARV PKTGSAYLYT ENSP00000004531/1-698 VLAGEVAKAD SGPSIVVSFL IAALASVMAG LCYAEFGARV PKTGSAYLYT bmy_00273T0/1-525 VLAGEVAKAD SGPSIVVSFL IAALASVMAG LCYAEFGARV PKTGSAYLYT BACU005184/1-740 VLAGEVAKAD SGPSIVVSFL IAALASVMAG LCYAEFGARV PKTGSAYLYT 151 200 ENSTTRP00000003211/1-623 YVTVGELWAF ITGWNLILSY VIGTSSVARA WSGTFDELLS KQIGQFFRTY ENSBTAP00000013304/1-660 YVTVGELWAF ITGWNLILSY VIGTSSVARA WSGTFDELLS KQIGQFFRTY ENSP00000004531/1-698 YVTVGELWAF ITGWNLILSY VIGTSSVARA WSGTFDELLS KQIGQFLRTY bmy_00273T0/1-525 YVTVGELWAF ITGWNLILSY VIGTSSVARA WSGTFDELLS KQIGQFFRTY BACU005184/1-740 YVTVGELWAF ITGWNLILSY VIGTSSVARA WSGTFDELLS KQIGQFFRTY 201 250 ENSTTRP00000003211/1-623 FKMNYTGLAE YPDFFAVCLI LLLAXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000013304/1-660 FKMNYTGLAE YPDFFAVCLI LLLAGLLSFG VKESAWVNKV FTAVNILVLL ENSP00000004531/1-698 FRMNYTGLAE YPDFFAVCLI LLLAGLLSFG VKESAWVNKV FTAVNILVLL bmy_00273T0/1-525 FKMNYTGLAE YPDFFAVCLI LLLAGLLSFG VKESAWVNKV FTAINILVLL BACU005184/1-740 FKMNYTGLAE YPDFFAVCLI LLLAGLLSFG VKESAWVNKV FTAINILVLL 251 300 ENSTTRP00000003211/1-623 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX EPPSENGTSI YGAGGFMPYG ENSBTAP00000013304/1-660 FVMVAGFVKG NVANWKISED FLKNISASAR DPPSENGTSV YGAGGFMPYG ENSP00000004531/1-698 FVMVAGFVKG NVANWKISEE FLKNISASAR EPPSENGTSI YGAGGFMPYG bmy_00273T0/1-525 FVMVAGFVKG NVANWKISEE FLKNISASAR EPPSENGTSI YGAGGFMPYG BACU005184/1-740 FVMVAGFVKG NVAHWKISEE FLKNISASAR EPPSENGTSI YGAGGFMPYG 301 350 ENSTTRP00000003211/1-623 FAGTLAGAAT CFYAFVGFDC IATTXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000013304/1-660 FAGTLAGAAT CFYAFVGFDC IATTVQKVRN PQKAIPIGIV TSLLVCFMAY ENSP00000004531/1-698 FTGTLAGAAT CFYAFVGFDC IATTGEEVRN PQKAIPIGIV TSLLVCFMAY bmy_00273T0/1-525 FAGTLAGAAT CFYAFVGFDC IATTGEEVRN PQKAIPIGIV TSLLVCFMAY BACU005184/1-740 FAGTLAGAAT CFYAFVGFDC IATTGEEVRN PQKAIPIGIV TSLLVCFMAY 351 400 ENSTTRP00000003211/1-623 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000013304/1-660 FGVSAALTLM MPYYLLDEKS PLPVAFEYVG WGPAKYVVAA GSLCALSTSL ENSP00000004531/1-698 FGVSAALTLM MPYYLLDEKS PLPVAFEYVG WGPAKYVVAA GSLCALSTSL bmy_00273T0/1-525 FGVSAALTLM MPYYLLDEKS PLPVAFEYVG WGPAKYVVAA GSLCALSTSL BACU005184/1-740 FGVSAALTLM MPYYLLDEKS PLPVAFEYVG WGPAKYVVAA GSLCALSTSL 401 450 ENSTTRP00000003211/1-623 XXXXXXXXXX XXXXXXXXXX XXXXXXX-XX XXXXXX---- ---------- ENSBTAP00000013304/1-660 LGSMFPLPRI LFAMARDGLL FRFLARV-SK RQSPVA---- ---------- ENSP00000004531/1-698 LGSIFPMPRV IYAMAEDGLL FKCLAQINSK TKTPII---- ---------- bmy_00273T0/1-525 LGSIFPMPRV IYAMAEDGLL FKCLAQINSK TKTPII---- ---------- BACU005184/1-740 LGSIFPMPRV IYAMAEDGLL FKCLAQINSK TKTPIIATLS SGAVAVLFAM 451 500 ENSTTRP00000003211/1-623 ---------- ---------- -XXLTAGVIS AVMAFLFDLK ALVDMMSIGT ENSBTAP00000013304/1-660 ---------- ---------- -ATLTAGVIS AVMAFLFDLK ALVDMMSIGT ENSP00000004531/1-698 ---------- ---------- -ATLSSGAVA ALMAFLFDLK ALVDMMSIGT bmy_00273T0/1-525 ---------- ---------- -ATLSSGAVA AVMAFLFDLK ALVDMMSIGT BACU005184/1-740 ARDGLLFRFL ARVSKRQSPV AATLTAGVIS AVMAFLFDLK ALVDMMSIGT 501 550 ENSTTRP00000003211/1-623 LLAYSLVAAC VLIL--RYQP GLSYEQPKYC PEKEALGSCA NTASKSESQV ENSBTAP00000013304/1-660 LLAYSLVAAC VLILRNRYQP GLSYEQPKYC SEKEALGSCA NRTSKSKSQV ENSP00000004531/1-698 LMAYSLVAAC VLIL--RYQP GLSYDQPKCS PEKDGLGSSP RVTSKSESQV bmy_00273T0/1-525 LLAYSL---- ---------- ---------- ---------- ---------- BACU005184/1-740 LLAYSLVAAC VLIL--RYQP GLSYEQPKYC PEKEALRSCA NTASKSESQV 551 600 ENSTTRP00000003211/1-623 TGPPGQGFSL RTLFSPSLLP TKQSASLVSF LVGFLAFLIL GLSILTTHGV ENSBTAP00000013304/1-660 TMLPGQGFSL RTLFNPSLLP TKQSASLVSF LVGFLAFLIL GLSVLTTHSV ENSP00000004531/1-698 TMLQRQGFSM RTLFCPSLLP TQQSASLVSF LVGFLAFLVL GLSVLTTYGV bmy_00273T0/1-525 ---------- ---------- ---------- ---------- ---------- BACU005184/1-740 TVLPGQGFSL RTLFSPSLLP TKQSASLVSF LVGFLAFLIL GLSVLTTRGV 601 650 ENSTTRP00000003211/1-623 HTIARLEAWS LALLVLLLVL CVAIVLIIWR QPQNQQKVAF MVPFLPFLPA ENSBTAP00000013304/1-660 HTIARLEAWS LALLVLFLAL CVAIVLIIWR QPQNQQKVAF MVPFLPFLPA ENSP00000004531/1-698 HAITRLEAWS LALLALFLVL FVAIVLTIWR QPQNQQKVAF MVPFLPFLPA bmy_00273T0/1-525 ---------- ---------- ---------- ---------- -VPFLPFLPA BACU005184/1-740 HAIAGLEAWS LALLALLLAL CVTIVLIIWR QPQNQQKVAF MVPFLPFLPA 651 700 ENSTTRP00000003211/1-623 FSILVNIYLM VQLSADTWIR FSIWMAL--- ---------- ---------- ENSBTAP00000013304/1-660 FSILVNIYLM VQLSADTWIR FSVWMALGFL IYFAYGIRHS LEGNPRDEED ENSP00000004531/1-698 FSILVNIYLM VQLSADTWVR FSIWMAIGFL IYFSYGIRHS LEGHLRD-EN bmy_00273T0/1-525 FSILVNIYLM VQLSADTWIR FSIWMALGFL IYFAYGIRHS LEGNSRD-ED BACU005184/1-740 FSILVNIYLM VQLSADTWIR FSIWMALGFL IYFAYGIRHS LEGNSRD-ED 701 750 ENSTTRP00000003211/1-623 ---------- ---------- ---------- ---------- --- ENSBTAP00000013304/1-660 DDEDMYSDNI NAATEEKSAM QDGDHHQRNL SLPFIFHEKT SEC ENSP00000004531/1-698 NEEDAYPDNV HAAAEEKSAI QANDHHPRNL SSPFIFHEKT SEF bmy_00273T0/1-525 DDEDIYSDNI NAETEEKSAI QANDHHQRNL SLPFIFHEKT SEC BACU005184/1-740 DDEDIYSDNI NAETEEKSAI QANDHHQRNL SLPFIFHEKT SEC