KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:15 2014 Check: 00 .. Name: ENSP00000411355/1-1306 Len: 1468 Check: 917 Weight: 1.00 Name: ENSBTAP00000013320/1-1276 Len: 1468 Check: 7983 Weight: 1.00 Name: ENSTTRP00000008091/1-1274 Len: 1468 Check: 4393 Weight: 1.00 Name: bmy_13434T0/1-1259 Len: 1468 Check: 5856 Weight: 1.00 Name: BACU001705/1-1139 Len: 1468 Check: 8684 Weight: 1.00 // 1 50 ENSP00000411355/1-1306 ---------- ---------- ----MTMYLW LKLLAFGFA- ---------- ENSBTAP00000013320/1-1276 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008091/1-1274 ---------- ---------- ----MTMYLW LKLLAFGFA- ---------- bmy_13434T0/1-1259 VTKSYEKHDS RTVPLTRISF LLQNGGLHLK LEVMDALFAA GAHCLISRLH BACU001705/1-1139 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000411355/1-1306 ---------- ---------- -----FLDTE VFVTGQSPTP SPTGLTTAKM ENSBTAP00000013320/1-1276 ---------- ---------- ---------- ---------- ------TTEE ENSTTRP00000008091/1-1274 ---------- ---------- -----FLDTV VLVTGEQAFS STXXXXXXXX bmy_13434T0/1-1259 HKLEKLWFHS EMGLLRPLPW QPAAPFAKAC ALNRTSYTSS FPIKTQKKKN BACU001705/1-1139 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000411355/1-1306 PSVP------ ---------- ---------- ---------- ---------- ENSBTAP00000013320/1-1276 PSTP------ ---------- ---------- ---------- ---------- ENSTTRP00000008091/1-1274 XXXX------ ---------- ---------- ---------- ---------- bmy_13434T0/1-1259 RSTPRRRNHK SRKATKAALS CANSRLARRA FLKHARNNEN SKTNNIVLTY BACU001705/1-1139 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000411355/1-1306 ---------- ---------- ---LSSDPLP THTTAFSPAS TFERENDFSE ENSBTAP00000013320/1-1276 ---------- ---------- ---TSGGPLP ARTTASSPAN TSKGGKDSSE ENSTTRP00000008091/1-1274 ---------- ---------- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13434T0/1-1259 LGFVSTILRE GLWFHRGQDT VPSTQGHPLP AHTTAFSLAS ISERGNDSSE BACU001705/1-1139 ---------- ---------- ------MPLA RRKTGMLTA- ---------- 201 250 ENSP00000411355/1-1306 TTTSLSPDNT STQVSPDSLD NASAFNTTGV SSVQTPHLPT HADSQTPSAG ENSBTAP00000013320/1-1276 ISPPTSPDSL ITKAPPTSWD KNYDRQSM-- -SFKQPPHFT DSEARPPWVG ENSTTRP00000008091/1-1274 XXXXXXXXXX XXXXXXXXXX XXXXXXV--- -PAQTPHLPS PADPRVPSA- bmy_13434T0/1-1259 TTPPPGPESS TTEVSLNSWD NDSIP----- ---------- ---------- BACU001705/1-1139 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000411355/1-1306 TDTQTFSGSA ANAKLNPTPG SNAISDVPGE RSTASTFPTD PVSPLTTTLS ENSBTAP00000013320/1-1276 GQIQTFSPGP RCLIYSRMLM AFVIAGAPGE GTT-TTLPAD PAAPPATSRS ENSTTRP00000008091/1-1274 ---------- ----LTPALG RNVKSRAPGE RTAPSSLPAD TTFPPVTTLS bmy_13434T0/1-1259 ---------- ---------- --AVTGAPRE RTAPSTLPAD TAFPPVTTLS BACU001705/1-1139 ---------- ---------- -FVMAGAPRE RTAPSTLPAD TAFPPVTTLS 301 350 ENSP00000411355/1-1306 LAHHSSAALP ARTSNTTITA NTSDAYLNA- ------SETT TLSPSGSAVI ENSBTAP00000013320/1-1276 PALSSTAASP PLTSNSTTQD NASLPLTSNS TTQDEQTTTP ALTTASSVSP ENSTTRP00000008091/1-1274 PAHSSPAASP AHISNSTTQD NASDKFNAS- ------TTPS YPTSAKGIIS bmy_13434T0/1-1259 PAXSSHAASP AHISNSTTQD NASDVLNVS- ------TTPS SLTPAKTIIS BACU001705/1-1139 PAHSSRAASP ARISNSTTQD NASDVLNAS- ------TTPS SLTSAENIIS 351 400 ENSP00000411355/1-1306 STTTIATTPS ---KPTCDEK YANI-TVDYL YNKETKLFTA KLNVNENVEC ENSBTAP00000013320/1-1276 ATALSTIAPT ---KPPCENK YGGV-SVKYS FN-DNKTFTA TLDV-KREEC ENSTTRP00000008091/1-1274 TTDLTTTANT -THKPSCEDK YAAVLSVHYV YNNESETYNA TLS------- bmy_13434T0/1-1259 TTDLPTIAPL -----TTQEK YADI-SVHCS HNKESDTYNA TLS---EVTC BACU001705/1-1139 TTNLTTIAPP TTRMPTCEDK YASI-SAHFI YNKESDTYNA TFS---EVKC 401 450 ENSP00000411355/1-1306 GNNTCTNNEV HNLTECKNAS VSISHNSCTA PDKTLILDVP PGVEKFQLHD ENSBTAP00000013320/1-1276 EPPGC-EKEH RGLSACQTKN ISMSHPSCEP P-FEYVLEVP PDPNQFQLVD ENSTTRP00000008091/1-1274 ------DENL HGLKACEKKN INITHPSCYP P-F--ILRVP PDRKHFQLNE bmy_13434T0/1-1259 ESPGR-EVQL HDLQECEKXK INIXXASCYP P-FEYLLEVP PDPKHFQLNE BACU001705/1-1139 EPLGC-EKQL HGLQECEKKK INISDLSCHP P-FEYLLEVP PDPKHFQLNE 451 500 ENSP00000411355/1-1306 CTQVEKADTT ICLKWKNIE- ----TFTCDT QNITYRFQCG NMIFDNKEIK ENSBTAP00000013320/1-1276 CVEDEEANTS LCLHWQNKDF PDNGQFKCNE NKIEYKFKCD GGSPSYNKDT ENSTTRP00000008091/1-1274 CVEPEKANTS LCLRWEISK- ----NVTCDK KNITYKFKCD GLSPYNESDR bmy_13434T0/1-1259 CVEPEKANXS LCLHWEITK- ----NFTCDK KKITYKFECD ---------- BACU001705/1-1139 CVEPEKANTS LCLHWEITK- ----NFTCDK KKITYKFECG GLSPYNKSGR 501 550 ENSP00000411355/1-1306 LE--NLEPEH EYKCDSEILY NNHKFTNASK IIKTDFGSPG EPQIIFCRSE ENSBTAP00000013320/1-1276 FKVRNLKPRT NYTCSSQVLY DQQLLISQNK TIETDFGEPE APQNFTCSAK ENSTTRP00000008091/1-1274 FETFNLQPQT NYTCSSEVSY NNKFLTSQNT TIKTDFGVPG IPQNMTCSNF bmy_13434T0/1-1259 ---------- ---------- ---------- --------PG IPQNMSCANF BACU001705/1-1139 FE-------- ---------- ---------- ---------- ---------- 551 600 ENSP00000411355/1-1306 AAHQGVITWN PPQRSFHNFT LCYIKE---- ---------T EKDCLNLDKN ENSBTAP00000013320/1-1276 NATEGKCTWT PPQSYFDRIS LCYWITP--- ---------G GRNCIPQDKT ENSTTRP00000008091/1-1274 SADKGWVTWE PPANFFHTFT LCYRNS---- ---------S EKRCHTLNKT bmy_13434T0/1-1259 SARKGWVTWG PPANFFHTFT LCYQNA---- ---------S EGRCHTLNKT BACU001705/1-1139 ---KGQ--LQ PQSNYTCSSQ VSYNHKIFTS QNKTIQTDYG AKRCHTLNKT 601 650 ENSP00000411355/1-1306 LIKYDLQNLK PYTKYVLSLH AYIIAKVQRN GSAAMCHFTT KSAPPSQVWN ENSBTAP00000013320/1-1276 QDGIDLHNLR PFTNYTVVLQ ARVTGKVTR- SRNATYTFWT DPAKPSKVNG ENSTTRP00000008091/1-1274 TNTINLEYLK PFTNYSITLH ASVNGRVKRN GTDEKCEVET KAKCPSKVKD bmy_13434T0/1-1259 TNTIHLEYLK PFTRYEITLH ASVNGRVER- ---------- ----PSEVTD BACU001705/1-1139 TNTINLEYLK PFTRYEITLH ASVNGSVERN GTDVKCVVET EATCPSEVMD 651 700 ENSP00000411355/1-1306 MTVSMTSDNS MHVKCRPPRD RNGPH-ERYH LEVEAGN-TL VRNESHKNCD ENSBTAP00000013320/1-1276 LSASRKTENT IAVSCKRPDQ LNGPE-GKYY LEVRTGN-TL VKKDSGPECR ENSTTRP00000008091/1-1274 LRVSRKTDNS MNVNCKPPDN FNGPQ-G-YH LIVSIGNHST VKKSQQQKCT bmy_13434T0/1-1259 LNVSRRTDNS MAV------- ---------- ---------- ---------- BACU001705/1-1139 LHVSRKTDNS MAVSCKPPKD FNGSQKGQYH LKVSIGNNSA ERELKQPECK 701 750 ENSP00000411355/1-1306 FRVKDLQYST DYTFKAYFHN GDYPGEPFIL HHSTSYNSKA LIAFLAFLII ENSBTAP00000013320/1-1276 FLVEDLQYLT EYNFLVYYDN TKFAGLPESV TASTSYNAKA LIIFLVFLII ENSTTRP00000008091/1-1274 FLVEGLQYST EYTFRVFYHN GKYAGDPIIV SQSTSYNSNA VIIFLVFLII bmy_13434T0/1-1259 ---------- ------YYNN GIYSGHPKIV SQSTSYNSKA LIIFLVFLII BACU001705/1-1139 FLVEGLQYST QYTFQVYYHN GMYSGHPKIV SQSTSYNSNA LIIFLVFLII 751 800 ENSP00000411355/1-1306 VTSIALLVVL YKIYDLHKKR SCNLDEQQEL VERDDEKQLM NVEPIHADIL ENSBTAP00000013320/1-1276 VTSIALLIVL YKIYDLHKKR SSNLDEQQEL VERDDEKQLM NVEPIHADVL ENSTTRP00000008091/1-1274 VTSIALLVVL YKIYDLQKKR SSNLDEQQEL VERXXXXXXX XXXXXXADV- bmy_13434T0/1-1259 VTSIALLIVL YKIYDLQKKR SSNLDEQQEL VERDDERQLM NVEPIHADVL BACU001705/1-1139 VTSIALLIVL YKIYDLQKKR SSNLDEQQEL VERDDERQLM NVEPIHADVL 801 850 ENSP00000411355/1-1306 LETYKRKIAD EGRLFLAEFQ SIPRVFSKFP IKEARKPFNQ NKNRYVDILP ENSBTAP00000013320/1-1276 LETYKRKMAD EGRLFLAEFQ SIPRVFSKFS IKDARKSFNQ NKNRYVDILP ENSTTRP00000008091/1-1274 LETYKRKIAD EGRLFLAEFQ SIPRVFGKFS IKDARKPFNQ NKNRYVDILP bmy_13434T0/1-1259 LETYKRKIAD EGRLFLAEFQ SIPRVFGKFS IKDARKPFNQ NKNRYVDILP BACU001705/1-1139 LETYKRKIAD EGRLFLAEFQ SIPRVFGKFS IKDARKPFNQ NKNRYVDILP 851 900 ENSP00000411355/1-1306 YDYNRVELSE INGDAGSNYI NASYIDGFKE PRKYIAAQGP RDETVDDFWR ENSBTAP00000013320/1-1276 YDYNRVELSD INGDAGSNYI NASYIDGFKE PRKYIAAQGP RDETVDDFWR ENSTTRP00000008091/1-1274 YDYNRVELSD INGDAGSNYI NASYIDGFKE PRKYIAAQGP RDETVDDFWR bmy_13434T0/1-1259 YDYNRVELSD INGDAGSNYI NASYIDGFKE PRKYIAAQGP RDETVDDFWR BACU001705/1-1139 YDYNRVELSD INGDAGSNYI NASYIDGFKE PRKYIAAQGP RDETVDDFWR 901 950 ENSP00000411355/1-1306 MIWEQKATVI VMVTRCEEGN RNKCAEYWPS MEEGTRAFGD VVVKINQHKR ENSBTAP00000013320/1-1276 MIWEQKATVI VMVTRCEEGN KNKCAEYWPS MDEGSRVYGD VIVEINEHKR ENSTTRP00000008091/1-1274 MIWEQKATVI VMVTRCEEGN KNKCALYWPL MEEGSRVFGD VIVEINEHKR bmy_13434T0/1-1259 MIWEQKATVI VMVTRCEEGN KNKCALYWPS MEEGSRVFGD VIVEINEHKR BACU001705/1-1139 MIWEQKATVI VMVTRCEEGN KNKCALYWPS MEEGSRVFGD VIVEINEHKR 951 1000 ENSP00000411355/1-1306 CPDYIIQKLN IVNKKEKATG REVTHIQFTS WPDHGVPEDP HLLLKLRRRV ENSBTAP00000013320/1-1276 CPDYIIQKLT VGNRKEKASG RAVTHIQFTS WPDHGVPEDP HLLLKLRRRV ENSTTRP00000008091/1-1274 CPDYIIQKLT IANRKEKATG RAVTHIQFTS WPDHGVPEDP HLLLKLRRRV bmy_13434T0/1-1259 CPDYIIQKLT IANRKEKATG RAVTHIQFTS WPDHGVPEDP HLLLKLRRRV BACU001705/1-1139 CPDYIIQKLT IANRKEKATG RAVTHIQFTS WPDHGVPEDP HLLLKLRRRV 1001 1050 ENSP00000411355/1-1306 NAFSNFFSGP IVVHCSAGVG RTGTYIGIDA MLEGLEAENK VDVYGYVVKL ENSBTAP00000013320/1-1276 NAFSNFFSGP IVVHCSAGVG RTGTYIGIDA MLEGLEAENK VDVYGYVVKL ENSTTRP00000008091/1-1274 NAFSNFFSGP VVVHCSAGVG RTGTYIGIDA MLEGLEAESK VDVYGYVVKL bmy_13434T0/1-1259 NAFSNFFSGP VVVHCSAGVG RTGTYIGIDA MLEGLEAESK VDVYGYVVKL BACU001705/1-1139 NAFSNFFSGP VVVHCSAGVG RTGTYIGIDA MLEGLEAESK VDVYGYVVKL 1051 1100 ENSP00000411355/1-1306 RRQRCLMVQV EAQYILIHQA LVEYNQFGET EVNLSELHPY LHNMKKRDPP ENSBTAP00000013320/1-1276 RRQRCLMVQV EAQYILIHQA LVEYNQFGET EVSLSELHPY LSNMKKRDPP ENSTTRP00000008091/1-1274 RRQRCLMVQV EAQYILIHQA LVEYNQFGET EVSLSELHPY LSNMKKRDPP bmy_13434T0/1-1259 RRQRCLMVQV EAQYILIHQA LVEYNQFGET EVSLSELHPY LSNMKKRDPP BACU001705/1-1139 RRQRCLMVQV EAQYILIHQA LVEYNQFGET EVSLSELHPY LSNMKKRDPP 1101 1150 ENSP00000411355/1-1306 SEPSPLEAEF QRLPSYRSWR TQHIGNQEEN KSKNRNSNVI PYDYNRVPLK ENSBTAP00000013320/1-1276 SEPSPLEAEF QRLPSYRSWR TQHIGNQEEN KSKNRNSKII PYDFNRVALK ENSTTRP00000008091/1-1274 SEPSPLEAEF QRLPSYRSWR TQHIGNQEEN KSKNRNSNVI PYDFNRVTLK bmy_13434T0/1-1259 SEPSPLEAEF QRLPSYRSWR IQHIGNQEEN KN-------- --DFNRVTLK BACU001705/1-1139 SEPSPLEAEF QRLPSYRSWR IQHIGNQEEN KSKNRNSNII PYDFNRVTLK 1151 1200 ENSP00000411355/1-1306 HELEMSKESE HDSDESSDDD SDSEEPSKYI NASFIMSYWK PEVMIAAQGP ENSBTAP00000013320/1-1276 HELETSKESE QDSDESSDDD SDLEEISRYI NASFVMSYWK PEVMIAAQGP ENSTTRP00000008091/1-1274 HELEMSKESE HDSDESSDDD SDSEEMSKYI NASFVMSYWK PEVMIAAQGP bmy_13434T0/1-1259 HELEMSKESE HDSDESSDDE SDSEETSKYI NASFVMSYWK PEVMIAAQGP BACU001705/1-1139 HELEMSKESE HDSDESSDDE SDSEETSKYI NASFVMSYWK PEVMIAAQGP 1201 1250 ENSP00000411355/1-1306 LKETIGDFWQ MIFQRKVKVI VMLTELKHGD QEICAQYWGE GKQTYGDIEV ENSBTAP00000013320/1-1276 LKETIGDFWQ MVFQRKVRVI VMLTELKSGD KEACAQYWEE GKQAYGDVEV ENSTTRP00000008091/1-1274 LKETIGDFWQ MIFQRKVKVI VMLTELKNGD QEACSQYWEE GKQTYGDIEV bmy_13434T0/1-1259 LKETIGDFWQ MIFQRKVKVI VMLTELKNGD QEACSQYWEE GKQTYGDVEV BACU001705/1-1139 LKETIGDFWQ MIFQRKVRVI VMLTELKNGD QEACSQYWEE GKQTYGDVEV 1251 1300 ENSP00000411355/1-1306 DLKDTDKSST YTLRVFELRH SKRKDSRTVY QYQYTNWSVE QLPAEPKELI ENSBTAP00000013320/1-1276 HMKDTNKSSA YTVRAFELRH SKRKDPRTVY QYQFNNWNGE ELPAEPKELV ENSTTRP00000008091/1-1274 HMKDTNKSSA YTIRAFELRH SKRKDPRTVF QYQFHNWNGE ELPVEPKDLI bmy_13434T0/1-1259 HMKDTNKSSA YTIRAFELRH SKRKDPRTVY QYQFNNWNGE ELPVEPKELI BACU001705/1-1139 HMKDTNKSSA YTIRAFELRH SKRKDPRTVY QYQFNNWNGE ELPVEPKELI 1301 1350 ENSP00000411355/1-1306 SMIQVVKQKL PQKNSSEGNK HHKSTPLLIH CRDGSQQTGI FCALLNLLES ENSBTAP00000013320/1-1276 LMIQNLKQKL PKKNSAEGNK YHRNVPLLIH CRDGSQQTGI FCALFNLLES ENSTTRP00000008091/1-1274 LMIQNLKQKL P-KNSTEGNK FHRNVPLLIH CRDGSQQTGI FCALLNLLES bmy_13434T0/1-1259 SMIQNLKQKL PKKNSTEGNK FHRNVPLLIH CRDGSQQTGI FCALLNLLES BACU001705/1-1139 SMIQNLKQKL PKKNSTEGNK FHRNVPLLIH CRDGSQQTGI FCALLNLLES 1351 1400 ENSP00000411355/1-1306 AETEEVVDIF QVVKALRKAR PGMVSTFEQY QFLYDVIAST YPAQNGQVKK ENSBTAP00000013320/1-1276 ADTEEVIDVF QAVKSLRKAR PGMVPTFEQY QFLYDVIAST FPAQNGQVKK ENSTTRP00000008091/1-1274 AETEEVIDVF QAVKSLRKAR PGMVPTFEQY QFLYDVIASI YPAQNGQVKK bmy_13434T0/1-1259 AETEEVIDVF QAVKSLRKAR PGMVPTFEQY QFLYDVIASI CPAQNGQVKK BACU001705/1-1139 AETEEVIDVF QAVKSLRKAR PGMVPTFEQY QFLYDVIAST CPAQNGQVKK 1401 1450 ENSP00000411355/1-1306 NNHQEDKIEF DNEVDKVKQD ANCVNPLGAP EKLPEAKEQA EGSEPTSGTE ENSBTAP00000013320/1-1276 SKHPEDKVEI DNEVDKAKPD ANCTSPPEAL EKTSEGDKEA GGAKPTEGAE ENSTTRP00000008091/1-1274 NNQQEDKIEF DNEVDKAKQD ANCVSPPGAL DKTPEGNKED ESSKPTSGPE bmy_13434T0/1-1259 NNQQEDKIEF DNEVDKAKQD ANCVSPPGAL DKTPEGNKED ESSKPASGPE BACU001705/1-1139 NNQQEDKIEF DNEVDKAKQD ANCVSPPGAL DKTPEGNKED ESSKPASGPE 1451 1500 ENSP00000411355/1-1306 GPEHSVNGPA SPALNQGS ENSBTAP00000013320/1-1276 GPEHAANGPA SPVLTQSA ENSTTRP00000008091/1-1274 GPEHSANGPA SPVLTQSA bmy_13434T0/1-1259 GPEHSANGPA SPVLTQSA BACU001705/1-1139 GPEHSANGPA SPVLTQSA