KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:20 2014 Check: 00 .. Name: ENSTTRP00000009616/1-537 Len: 909 Check: 2768 Weight: 1.00 Name: BACU018086/1-860 Len: 909 Check: 9559 Weight: 1.00 Name: bmy_05296T0/1-525 Len: 909 Check: 9977 Weight: 1.00 Name: ENSP00000290810/1-534 Len: 909 Check: 6396 Weight: 1.00 Name: ENSBTAP00000013367/1-534 Len: 909 Check: 7295 Weight: 1.00 // 1 50 ENSTTRP00000009616/1-537 MAQPGKLLKE QKYDRQLRLW GDHGQEALES AHVCLINATA TGTEILKNLV BACU018086/1-860 MAQPGKLLKE QKYDRQLRLW GDHGQEALES AHVCLINATA TGTEILKNLV bmy_05296T0/1-525 MAQPGKLLKE QKYDRQLRLW GDHGQEALES AHVCLINATA TGTEILKNLV ENSP00000290810/1-534 MAQLGKLLKE QKYDRQLRLW GDHGQEALES AHVCLINATA TGTEILKNLV ENSBTAP00000013367/1-534 MAQPGKLLKE QKYDRQLRLW GDHGQEALES AHVCLINATA TGTEILKNLV 51 100 ENSTTRP00000009616/1-537 LPGIIRIGSF TIIDGNQVSG EDAGNN---F FLQRSSIG-- ---------- BACU018086/1-860 LPG---IGSF TIIDGNQVSG EDAGNN---F FLQRSSIG-- ---------- bmy_05296T0/1-525 LPG---IGSF TIIDGNQVSG EDAGNKYVLF FSNTCMLGKA FFPSEKQYWQ ENSP00000290810/1-534 LPG---IGSF TIIDGNQVSG EDAGNN---F FLQRSSIG-- ---------- ENSBTAP00000013367/1-534 LPG---IGSF TIIDGNQVSG EDAGNN---F FLQRSSIG-- ---------- 101 150 ENSTTRP00000009616/1-537 -------KNR AQAAMEFLQE LNNDVSGNFV EESPENLLDN DPSFFCRFTI BACU018086/1-860 ---------- ---------- ---------- -KSPENLLDN DPSFFCRFTI bmy_05296T0/1-525 VKCFVFKKNR AQAAMEFLQE LNNDVSGSFV EESPENLLDN DPSFFCRFTI ENSP00000290810/1-534 -------KNR AEAAMEFLQE LNSDVSGSFV EESPENLLDN DPSFFCRFTV ENSBTAP00000013367/1-534 -------KNR AQAAMEFLQE LNNDVSGSFV EESPENLLDN DPSFFCRFTI 151 200 ENSTTRP00000009616/1-537 VVATQLPEST LLRLADVLWS SQIPLLICRT YGLVGYMRII IKEHPVIESH BACU018086/1-860 VVATQLPEST LLNLADVLWN SQIPLLICRT YGLVGYMRII IKEHPVIESH bmy_05296T0/1-525 VVATQLPEST LLNLADVLWN SQIPLLICRT YGLVGYMRII IKEHPVIESH ENSP00000290810/1-534 VVATQLPEST SLRLADVLWN SQIPLLICRT YGLVGYMRII IKEHPVIESH ENSBTAP00000013367/1-534 VVATQLSEST LLRLADVLWN SQIPLLICRT YGLVGYMRII IKEHPVIESH 201 250 ENSTTRP00000009616/1-537 PDNALEDLRL DKPFPELREH FQSYDLDHME KKDHSHTPWI VIIAKYLAQW BACU018086/1-860 PDNALEDLRL DKPFPELREH FQSYDLDHME KKDHSHTPWI VIIAKYLAQW bmy_05296T0/1-525 PDNALEDLRL DKPFPELREH FQSYDLDHME KKDHSHTPWI VIIAKYLAQW ENSP00000290810/1-534 PDNALEDLRL DKPFPELREH FQSYDLDHME KKDHSHTPWI VIIAKYLAQW ENSBTAP00000013367/1-534 PDNALEDLRL DKPFPELREH FQSYDLDHME KKDHSHTPWI VIVAKYLAQW 251 300 ENSTTRP00000009616/1-537 YSEXXXXXXX XXXXXXXXXX XXXXXILKNE NGAPEDEENF EEAIKNVNTA BACU018086/1-860 YSETNGRIPK TYKEKEDFRD LIRQGILKNE NGAPEDEENF EEAIKNVNTA bmy_05296T0/1-525 YSETNGRIPK TYKEKEDFRD LIRQGILKNE NGAPEDEENF EEAIKNVNTA ENSP00000290810/1-534 YSETNGRIPK TYKEKEDFRD LIRQGILKNE NGAPEDEENF EEAIKNVNTA ENSBTAP00000013367/1-534 YSETNGRIPK TYKEKEDFRD LIRQGILKNE NGTPEDEENF EEAIKNVNTA 301 350 ENSTTRP00000009616/1-537 LNTTQIPSSI EDIFNDDRCI NITKQTPTFW ILARALKEFV AKEGQGNLPV BACU018086/1-860 LNTTQIPSSI EDIFNDDRCI NITKQTPTFW ILARALKEFV AKEGQGNLPV bmy_05296T0/1-525 LNTTQIPSSI EDIFNDDRCI NITKQTPTFW ILARALKEFV AKEGQGNLPV ENSP00000290810/1-534 LNTTQIPSSI EDIFNDDRCI NITKQTPSFW ILARALKEFV AKEGQGNLPV ENSBTAP00000013367/1-534 LNTTQIPSSI EDIFNDDRCI NITKQTPTFW ILARALKEFV AKEGQGNLPV 351 400 ENSTTRP00000009616/1-537 RGTIPDMIAD SGKYIKLQNV YREKAKKDAA AVGNHVAKLL QSIGQXXXXX BACU018086/1-860 RGTIPDMIAD SGKYIKLQNV YREKAKKDAA AVGNHVAKLL QSIGQAPESI bmy_05296T0/1-525 RGTIPDMIAD SGKYVKLQNV YREKAKKDAA AVGNHVAKLL QSIGQAPESI ENSP00000290810/1-534 RGTIPDMIAD SGKYIKLQNV YREKAKKDAA AVGNHVAKLL QSIGQAPESI ENSBTAP00000013367/1-534 RGTIPDMIAD SGKYIKLQNV YREKAKKDAA AVGNHVAKLL QSIGQAPESI 401 450 ENSTTRP00000009616/1-537 XXXXXXXXXS NSAFLRVVRC RSLAEEYGLH TVNKDEIISS MDNPDNEIVL BACU018086/1-860 SEKELKLLCS NSAFLRVVRC RSLAEEYGLH TVNKDEIISS MDNPDNEIVL bmy_05296T0/1-525 SEKELKLLCS NSAFLRVVRC RSLAEEYGLH TINKDEI--- ---------- ENSP00000290810/1-534 SEKELKLLCS NSAFLRVVRC RSLAEEYGLD TINKDEIISS MDNPDNEIVL ENSBTAP00000013367/1-534 SEKELKLLCS NSAFLRVVRC RSLAEEYSLD TINKDEIISS MDNPDNEIVL 451 500 ENSTTRP00000009616/1-537 YLMLRAVDRF HKQHGRYPGV SNYQVEEDIG KLKSCLTGFL QEYGLSIIVK BACU018086/1-860 YLMLRAVDRF HKQHGRYPGV SNYQVEEDTG KLKSCLTGFL QEYGLSIMVK bmy_05296T0/1-525 ---------- --------RV SNYQVEDDTG KLKSCLTGFL QEYGLSIMVK ENSP00000290810/1-534 YLMLRAVDRF HKQQGRYPGV SNYQVEEDIG KLKSCLTGFL QEYGLSVMVK ENSBTAP00000013367/1-534 YLMLRAVDRF HKQHGRYPGV SNYQVEEDIG KLKSCLTSFL QEYGLSVMVK 501 550 ENSTTRP00000009616/1-537 DDYVHEFCRY GAAEPHTIAA FLG------- ---------- ---------- BACU018086/1-860 DDYVHEFCRY GATEPHTIAA FLGEMKTDLN LLLECLKYQM DNAFSQKEAL bmy_05296T0/1-525 DDYVHEFCRY GAAEPHTIAA FLG------- ---------- ---------- ENSP00000290810/1-534 DDYVHEFCRY GAAEPHTIAA FLG------- ---------- ---------- ENSBTAP00000013367/1-534 DDYVHEFCRY GAAEPHTIAA FLG------- ---------- ---------- 551 600 ENSTTRP00000009616/1-537 ---------- ---------- ---------- ---------- ------GAAA BACU018086/1-860 VTIHSICQQN SNASLYFREI GGLMFVKNLA KSSEHSMVKE AALYTLGAVA bmy_05296T0/1-525 ---------- ---------- ---------- ---------- ------GAAA ENSP00000290810/1-534 ---------- ---------- ---------- ---------- ------GAAA ENSBTAP00000013367/1-534 ---------- ---------- ---------- ---------- ------GAAA 601 650 ENSTTRP00000009616/1-537 QE-------- ----VIKVIT KQF------- ---------- ---------- BACU018086/1-860 EQNGTGQTLV RETGCISVLS QLFKTVLSKY ELNLSDENVF QSYQLWSSVC bmy_05296T0/1-525 QE-------- ----VIKVIT KQF------- ---------- ---------- ENSP00000290810/1-534 QE-------- ----VIKIIT KQF------- ---------- ---------- ENSBTAP00000013367/1-534 QE-------- ----VIKIIT KQF------- ---------- ---------- 651 700 ENSTTRP00000009616/1-537 ---------- ---------- ---------- ---------- --------VI BACU018086/1-860 STLCVCVNNP QNDENQMLCS SLFPHANDWL INCMKPEIIR PICSFIGLTL bmy_05296T0/1-525 ---------- ---------- ---------- ---------- --------VI ENSP00000290810/1-534 ---------- ---------- ---------- ---------- --------VI ENSBTAP00000013367/1-534 ---------- ---------- ---------- ---------- --------VI 701 750 ENSTTRP00000009616/1-537 FNNTYI---- ---------- ---------- ---------- ---------- BACU018086/1-860 ANNTYVQKYF ISVGGLDVLS QVLVQLESDS HKTLSSAKLA VVVTKTVDAC bmy_05296T0/1-525 FNNTYI---- ---------- ---------- ---------- ---------- ENSP00000290810/1-534 FNNTYI---- ---------- ---------- ---------- ---------- ENSBTAP00000013367/1-534 FNNTYI---- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000009616/1-537 ---------- ---------- ---------- ---------- ---------- BACU018086/1-860 IADNPTFGVV LSKYHIVSKL LALLLHESLD SGEKFSIVLT VGHCTEDCEE bmy_05296T0/1-525 ---------- ---------- ---------- ---------- ---------- ENSP00000290810/1-534 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013367/1-534 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000009616/1-537 -------YSG MS-------- ------QTSA TFQL------ ---------- BACU018086/1-860 NQYDLFKSNG LPLMIQVLTE SQNEELNKAA TFVLHNCKKI TEKLSLSLGE bmy_05296T0/1-525 -------YSG MS-------- ------QTSA TFQL------ ---------- ENSP00000290810/1-534 -------YSG MS-------- ------QTSA TFQL------ ---------- ENSBTAP00000013367/1-534 -------YSG MS-------- ------QTSA TFQL------ ---------- 851 900 ENSTTRP00000009616/1-537 ---------- ---------- ---------- ---------- ---------- BACU018086/1-860 YSFDENEEQL KDVNMKEKNL EDYWKKAKEI LHRIEQLERE GNEVGFFVSK bmy_05296T0/1-525 ---------- ---------- ---------- ---------- ---------- ENSP00000290810/1-534 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013367/1-534 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000009616/1-537 --------- BACU018086/1-860 NVELFSNIF bmy_05296T0/1-525 --------- ENSP00000290810/1-534 --------- ENSBTAP00000013367/1-534 ---------