KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:21 2014 Check: 00 .. Name: ENSTTRP00000007958/1-760 Len: 831 Check: 2695 Weight: 1.00 Name: ENSP00000296721/1-768 Len: 831 Check: 8279 Weight: 1.00 Name: ENSBTAP00000013389/1-763 Len: 831 Check: 7137 Weight: 1.00 Name: bmy_11262T0/1-542 Len: 831 Check: 6144 Weight: 1.00 Name: BACU013125/1-738 Len: 831 Check: 8295 Weight: 1.00 // 1 50 ENSTTRP00000007958/1-760 -----MDRSR VLEQLLPELT GLLSLLDHEY LSDTALEKKM AVASILQSLP ENSP00000296721/1-768 -----MDRGQ VLEQLLPELT GLLSLLDHEY LSDTTLEKKM AVASILQSLQ ENSBTAP00000013389/1-763 -----MDRGR VLEQLLPELT GLLSLLDHEY LSDTTLEKKM AVASILQSLQ bmy_11262T0/1-542 MTMLHGPSSS VLEQLLPELT GLLSLLDHEY LSDTTLEKKM AVASILQSLQ BACU013125/1-738 ---------- ---------- ---------- ---------M AVASILQSLQ 51 100 ENSTTRP00000007958/1-760 PLPXXXXXXX XXXXXXXXXX XXXXXXXXXX XXCDLSDLRD MTEDDGESCK ENSP00000296721/1-768 PLPAKEVSYL YVNTADLHSG PSFVESLFEE FDCDLSDLRD MPEDDGEPSK ENSBTAP00000013389/1-763 PLPAKEVSYL YVNTADLHSG PSFVESLFEE FDCDLSGLQD MPEDEAESCK bmy_11262T0/1-542 PLPAKEVSYL YVNTADLHSG PSFVESLFEE FDCDLSDLRD MTEDDGESCK BACU013125/1-738 PLPAKEVSYL YVNTADLHAG PSFVESLFEE FDCDLSDLRD MTEDDGESCK 101 150 ENSTTRP00000007958/1-760 EATPEPAKSP PLRHAADLPP PLPKRPPPEE YYEEALPLGP GKSPEYISSH ENSP00000296721/1-768 GASPELAKSP RLRNAADLPP PLPNKPPPED YYEEALPLGP GKSPEYISSH ENSBTAP00000013389/1-763 AASPEPAKSP SLRHTADLPP PLPNRPPPED YYEEALPLGP GKSPEYISSH bmy_11262T0/1-542 EATPEPAKSP SLRHAADLPP PLPKRPPPED YYEEALPLGP GKSPEYISSH BACU013125/1-738 EATPEPAKSP SLRHAADLPP PLPKRPPPED YYEEALPLGP GKSPEYISSH 151 200 ENSTTRP00000007958/1-760 NDCSPAHSIV DSYYEDADSS YPATRMNGEL KNSXXXXXXX XXXXXXXXXX ENSP00000296721/1-768 NGCSPSHSIV DGYYEDADSS YPATRVNGEL KSSYNDSDAM SSSYESYDEE ENSBTAP00000013389/1-763 NGCSPAHSLM DGYYEDADSS YPATRMNGEL KNSYNDSDAM SSSYESYDEE bmy_11262T0/1-542 NDCSPAHSIV DSYYEDADSS YPATRMNGEL KNSYNDSDAM SSSYESYDEE BACU013125/1-738 HDCSPAHSIV DSYYEDADSS YPATRMNGEL KNSYNDSDAM SSSYESYDEE 201 250 ENSTTRP00000007958/1-760 XXXXXXXXXX XXXXXXXXXX XXXRDCRICA FLLRKKRFGQ W-KQLTVIKE ENSP00000296721/1-768 EEEGKSPQPR HQWPSEEASM HLVRECRICA FLLRKKRFGQ WAKQLTVIRE ENSBTAP00000013389/1-763 EEEGKGPQPT HQWPSEEASM HLVRDCRICA FLLRKKRFGQ WAKQLTVIKE bmy_11262T0/1-542 EEEGKGPQPT HQWPSEEASM HLVRDCRICA FLLRKKRFGQ WAKQLTVIKE BACU013125/1-738 EEEGKGPQPT HQWPSEEASM HLVRDCRICA FLLRKKRFGQ WAKQLTVIKE 251 300 ENSTTRP00000007958/1-760 DQL------- ----CYKSSK DRQPHLRLAL DVCNVIYVPK DSRHKRHELR ENSP00000296721/1-768 DQLL------ ----CYKSSK DRQPHLRLAL DTCSIIYVPK DSRHKRHELR ENSBTAP00000013389/1-763 DQLL------ ----CYKSSK DRQPHLRLAL DVCSVIYVPK DSRHKRHELR bmy_11262T0/1-542 DQLLEALTPS IPVQCYKSSK DRQPHLRLAL DVCNVIYVPK DSRHKRHELR BACU013125/1-738 DQLL------ ----CYKSSK DRQPHLRLAL DVCNVIYVPK DSRHKRHELR 301 350 ENSTTRP00000007958/1-760 FSQGATEVLV LALQSREQAE EWLK------ ---------- ---------- ENSP00000296721/1-768 FTQGATEVLV LALQSREQAE EWLK------ ---------- ---------- ENSBTAP00000013389/1-763 FAQGATEVLV LALQSREQAE EWLK------ ---------- ---------- bmy_11262T0/1-542 FSQGATEVLV LALQSREQAE EWLKVQGGCA FAHPPPFLPL FARPSPQWSG BACU013125/1-738 FSQGATEVLV LALQSREQAE EWLK------ ---------- ---------- 351 400 ENSTTRP00000007958/1-760 ---------- ----VIREVS KSVGGAEGAD VPRSPVLLCK VDLDK----- ENSP00000296721/1-768 ---------- ----VIREVS KPVGGAEGVE VPRSPVLLCK LDLDK----- ENSBTAP00000013389/1-763 ---------- ----VIREVS KPVGGTEGAD VPRSPVLLCK ADLDK----- bmy_11262T0/1-542 PLSLEEQALL RGEGVIREVS KSVGGAEGAD VPRSPVLLCK VDLDK----- BACU013125/1-738 ---------- ----VIREVS KSVGGAEGAD VPRSPVLLCK VDLDKGAVCV 401 450 ENSTTRP00000007958/1-760 ---RLSQEKQ TSDSDSMGLS DNCSTLGR-- --EHGKGKKS SLSELKGSMS ENSP00000296721/1-768 ---RLSQEKQ TSDSDSVGVG DNCSTLGRRE TCDHGKGKKS SLAELKGSMS ENSBTAP00000013389/1-763 ---RLSQEKQ TSDSDSLGMG DSCSTLGR-- --EHGKGKKS SLSELKGSMS bmy_11262T0/1-542 ---RLSQEKQ TSDSDSMGLG DNCSTLGR-- --EHG----- ---------- BACU013125/1-738 PPQRLSQEKQ TSDSDSMGLG DNCSTLGR-- --EHGKGKKS SLSELKGSMS 451 500 ENSTTRP00000007958/1-760 RVAGRKITRI ISFSKKKALA DDLQTSSTEE EVPCCGYLNV LVNHGWKERW ENSP00000296721/1-768 RAAGRKITRI IGFSKKKTLA DDLQTSSTEE EVPCCGYLNV LVNQGWKERW ENSBTAP00000013389/1-763 RAAGRKITRI ISFSKKKALA DDLQASST-E EVPCCGYLNV LVNHGWKERW bmy_11262T0/1-542 ---------- ---------- ---------- ------YLNV LVNHGWKERW BACU013125/1-738 RAAGRKITRI ISFSKKKALA DDLQTSSTEE EVPCCGYLNV LVNHGWKERW 501 550 ENSTTRP00000007958/1-760 CRLKCNTLYF HKDHTDLRTH VNAITLHGCE VAPSFGPRHP FAFRILRNRQ ENSP00000296721/1-768 CRLKCNTLYF HKDHMDLRTH VNAIALQGCE VAPGFGPRHP FAFRILRNRQ ENSBTAP00000013389/1-763 CRLKCNTLYF HKDRTDLRTH VNAIALRGCE VAPGFGPRHP FAFRILHNRQ bmy_11262T0/1-542 CRLKCNTLYF HKDRTDLRTH VNAIALHGCE VAPSFGPRHP FAFRILRNRQ BACU013125/1-738 CRLKCNTLYF HKDRTDLRTH VNAIALHGCE VAPSFGPRHP FAFRILRNRQ 551 600 ENSTTRP00000007958/1-760 EVAILEASCS EDMGRWLGLL LVEMGSKVTP EALHYDYVDV ETLTSIVSAG ENSP00000296721/1-768 EVAILEASCS EDMGRWLGLL LVEMGSRVTP EALHYDYVDV ETLTSIVSAG ENSBTAP00000013389/1-763 EVAILEASCS EDMGRWLGLL LVEMGSKVTP EALHYDYVDV ETLTSIVSAG bmy_11262T0/1-542 EVAILEASCS EDMGRWLGLL LVEMGSKVTP EALHYDYVDV ETLTSIVSAG BACU013125/1-738 EVAILEASCS EDMGRWLGLL LVEMGSKVTP EALHYDYVDV ETLTSIVSAG 601 650 ENSTTRP00000007958/1-760 RNSFLYARSC QDQWPEPRVY DDVPYEKMQD EEPERPSGAQ IKRHASTCSE ENSP00000296721/1-768 RNSFLYARSC QNQWPEPRVY DDVPYEKMQD EEPERPTGAQ VKRHASSCSE ENSBTAP00000013389/1-763 RNSFLYARSC QDQWPEPRVY DDVPYEKMQD EEPERPPGAQ VKRHASTCSE bmy_11262T0/1-542 RNSFL----- ---------- ---------- ---------- ---------- BACU013125/1-738 RNSFLYARSC QDQWPEPRVY DDVPYEKMQD EEPERPSGAQ IKRHASTCSE 651 700 ENSTTRP00000007958/1-760 KSHRADPQVK VKRHASSAHQ YKYGKNRAEE DARRYLVEKE KLEKEKETIR ENSP00000296721/1-768 KSHRVDPQVK VKRHASSANQ YKYGKNRAEE DARRYLVEKE KLEKEKETIR ENSBTAP00000013389/1-763 KSHRVDPQVK VKRHASSAHQ YKYGKNRAEE DARRYLVEKE KLEKEKETIR bmy_11262T0/1-542 ---------- ---------- ---------- ---------- ---------- BACU013125/1-738 KSHRADPQVK VKRHASSAHQ YKYGKNRAEE DARRYLVEKE KLEKEKETIR 701 750 ENSTTRP00000007958/1-760 TELMTLRQ-K RELKEAIRNS P-AKLKGLEE ALATLEAQCR AKEEGRIDLE ENSP00000296721/1-768 TELIALRQEK RELKEAIRSS PGAKLKALEE AVATLEAQCR AKEERRIDLE ENSBTAP00000013389/1-763 TELMALRQEK RELKEAIRNN PGAKLKALEE ALATLEAQCR AKEEHRIDLE bmy_11262T0/1-542 ---------- ---------- ---------- ---------- ---------- BACU013125/1-738 TELMALRQEK RELKEAIRNS PGAKLKALEE ALATLEAQCR AKEEGRIDLE 751 800 ENSTTRP00000007958/1-760 LRLVAVKERL QQSLAGGPAL GLCVNSKNKS GETANKPQNN APEQPLPVNC ENSP00000296721/1-768 LKLVAVKERL QQSLAGGPAL GLSVSSKPKS GETANKPQNS VPEQPLPVNC ENSBTAP00000013389/1-763 LRLVTVKERL QQSLAGGPAL GLSVNSKIKS GETANKPQNN VPEQPLPVNC bmy_11262T0/1-542 ---------- ---------- ---------- ---------- ---------- BACU013125/1-738 LRLVAVKERL QQSLAGGPAL GLSVNSKNKS GETANKPQNN APEQPLPVNC 801 850 ENSTTRP00000007958/1-760 VSELRKRSPS IVTSNQGRVL QKAKEWEMKK T ENSP00000296721/1-768 VSELRKRSPS IVASNQGRVL QKAKEWEMKK T ENSBTAP00000013389/1-763 VSELRKRSPS IINSNQGRVL QKAKEWEMKK T bmy_11262T0/1-542 ---------- ---------- ---------- - BACU013125/1-738 VSELRKRSPS IVTSNQGRVL QKAKEWEMKK T