KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:24 2014 Check: 00 .. Name: ENSP00000300061/1-649 Len: 688 Check: 5125 Weight: 1.00 Name: ENSBTAP00000013412/1-652 Len: 688 Check: 5779 Weight: 1.00 Name: ENSTTRP00000005755/1-651 Len: 688 Check: 4747 Weight: 1.00 Name: bmy_18716T0/1-687 Len: 688 Check: 7350 Weight: 1.00 Name: BACU018203/1-604 Len: 688 Check: 6918 Weight: 1.00 // 1 50 ENSP00000300061/1-649 ---------- ---------- ---------- ------MAPG EKIKAKIKKN ENSBTAP00000013412/1-652 ---------- ---------- ---------- ------MAPG EKIKAKIKKN ENSTTRP00000005755/1-651 ---------- ---------- ---------- ------MAAG EKIKAKIKKN bmy_18716T0/1-687 MLSLYEEQNR AYPDRAHASR GPFGTDLPAP PSPIFTMAAG EKIKAKIKKN BACU018203/1-604 ---------- ---------- ---------- ------MAAG EKIKAKIKKN 51 100 ENSP00000300061/1-649 LPVTGPQAPT IKELMRWYCL NTNTHGCRRI VVSRGRLRRL LWIGFTLTAV ENSBTAP00000013412/1-652 LPVTGPQAPN IKELMQWYCL NTNTHGCRRI VVSRGRLRRL LWILFTLTAV ENSTTRP00000005755/1-651 LPVRGPQAPT IKELMRWYCL NTNTHGCRRI VVSRGRLRRL LWILFTLTAV bmy_18716T0/1-687 LPVRGPQAPT IKELMQWYCL NTNTHGCRRI VVSRGRLRRL LWILFTLTAV BACU018203/1-604 LPVRGPQAPT IKELMQWYCL NTNTHGCRRI VVSRGRLRRL LWILFTLTAV 101 150 ENSP00000300061/1-649 ALILWQCALL VFSFYTVSVS IKVHFRKLDF PAVTICNINP YKYSTVRHLL ENSBTAP00000013412/1-652 ALIFWQCALL ISSFYTVSVS IKVHFQKLDF PAVTICNINP YKYSAVRHLL ENSTTRP00000005755/1-651 ALIFWQCALL ISSFYTVSVS IKVHFQKLDF PAVTICNINP YRYSAVRDLL bmy_18716T0/1-687 ALIFWQCALL ISSFYTVSVS IKVHFQKLDF PAVTICNINP YRYSAVQDLL BACU018203/1-604 ALIFWQCALL ISSFYTVSVS IKVHFQKLDF PAVTICNINP YRYSAVRDLL 151 200 ENSP00000300061/1-649 ADLEQETREA LKSLYGFPE- -SRKRREAES WNSVSEGKQP RFSHRIPLLI ENSBTAP00000013412/1-652 ADLEQETRAA LKTLYGFSEI TSRKRREAQS WSSVRKGTDP KFLNLAPLMA ENSTTRP00000005755/1-651 AELEQETRGS LKTLFGFSEI TSRKRREAES WSSARKGTGS KFLNLIPLLA bmy_18716T0/1-687 ADLEKETRGT LKTLYGFSEI TSRKRREAES WSSAREGTGS KFLNLIPLLA BACU018203/1-604 ADLEKETRGT LKTLYGFSEI TSRKRREAES WSSAREGTGS KFLNLIPLLA 201 250 ENSP00000300061/1-649 FDQDEKGKAR DFFTGRKRKV GGSIIHKASN VMHI-ESKQV VGFQLCSNDT ENSBTAP00000013412/1-652 FEKGDTGKAR DFFTGRKRKV NARIIHKASD VMHIHNSKEV VGFQLCSNDT ENSTTRP00000005755/1-651 FEKGETSKAR DFRTGRKRKV SGRIVHTASD VVHVYESKGL VGFQLCSNDT bmy_18716T0/1-687 FDKGETSKAR DFRTGRKRKV SGRIIHEASD VMHVHESKEV VGFQLCSNDT BACU018203/1-604 FDKGETSKAR DFRTGRKRKV SGRIIHKASD VMHVHESKEV VGFQLCSNDT 251 300 ENSP00000300061/1-649 SDCATYTFSS GINAIQEWYK LHYMNIMAQV PLEKKINMSY SAEELLVTCF ENSBTAP00000013412/1-652 SDCAVYTFSS GVNAIQEWYK LHYMNIMAQV SQEKKINMSY SADELLVTCF ENSTTRP00000005755/1-651 SSCAVYTFTS GVNAIREWYK LHYMNIMAQV SLEKKINMSY SAEELLVTCF bmy_18716T0/1-687 SSCAVYTFSS GVNAIREWYK LHYMNIMAQV PPEKKINMSY SAEELLVTCF BACU018203/1-604 SSCAVYTFSS GVNAIREWYK LHYMNIMAQV SPEKKINMSY SAEELLVTCF 301 350 ENSP00000300061/1-649 FDGVSCDARN FTLFHHPMHG NCYTFNNREN ETILSTSMGG SEYGLQVILY ENSBTAP00000013412/1-652 FDGVSCDARN FTLFHHPMYG NCYTFNNRQN ETILSTSMGG SEFGLQVILY ENSTTRP00000005755/1-651 FDGESCDARN FTRFHHPMYG NCYTFNNRQN ETILSTSMGG SEYGLQVILY bmy_18716T0/1-687 FDGESCDARN FTRFHHPMYG NCYTFNNGQN ETILSTSMGG SEYGLQVILY BACU018203/1-604 FDGESCDARN FTRFHHPMYG NCYTFNNGQN ETILSTSMGG SEYGLQVILY 351 400 ENSP00000300061/1-649 INEEEYNPFL VSSTGAKVII HRQDEYPFVE DVGTEIETAM VTSIGMHLTE ENSBTAP00000013412/1-652 INEEEYNPFL VSSTGAKVII HRQDEYPFVE DVGTEIETAM ATSIGMHLTE ENSTTRP00000005755/1-651 LNEEEYNPFL VSSTGAKVIV HRQFEYPFIE DVGTEIETAM ATSIGMHLTE bmy_18716T0/1-687 INEEEYNPFL VSSTGAKVIV HRQDEYPFIE DVGTEIETAM ATSIGMHLTE BACU018203/1-604 INEEEYNPFL VSSTGAKVIV HRQDEYPFIE DVGTEIETAM ATSIGMHLTE 401 450 ENSP00000300061/1-649 SFKLSEPYSQ CTEDGSDVPI RNIYNAAYSL QICLHSCFQT KMVEKCGCAQ ENSBTAP00000013412/1-652 SFKLSDPYSQ CTEDWSDVQI TNIYNATYSL QICLHSCFQA KMVENCGCAQ ENSTTRP00000005755/1-651 SFKLSEPYSR CTEDWNGVLI TNIYNATYSL QICLHSCFQA KMVEKCGCAQ bmy_18716T0/1-687 SFKLSEPYSK CTEDWSDVLI TNIYNATYSL QICLHSCFQA KMVEKCGCAQ BACU018203/1-604 SFKLSEPYSK CTEDWSDVLI TNIYNATYSL --------QA KMVEKCGCAQ 451 500 ENSP00000300061/1-649 YSQPLPPAAN YCNYQQHPNW MYCYYQLHRA FVQEELGCQS VCKEACSFKE ENSBTAP00000013412/1-652 YSQPLPRGAD YCNYQQHPNW MYCYYQLHQA FVREELGCQS VCKEACSFKE ENSTTRP00000005755/1-651 FSQPLPQGAN YCNYRQHPNW MYCYYELHQA FVWGELGCQS MCKEACSFKE bmy_18716T0/1-687 FSQPLPRGAN YCNYQQHPNW MYCYYELHQD FVREELGCQV LCKEACSFKE BACU018203/1-604 FSQPLPRGAN YCNYQQHPNW MYCYYELHQD FVREELGCQT LCKEAC---- 501 550 ENSP00000300061/1-649 WTLTTSLAQW PSVVSEKWLL PVLTWDQGRQ VNKKLNKTDL AKLLIFYKDL ENSBTAP00000013412/1-652 WTLTTSLAQW PSEVSEKWLL SILTWDQSQQ IKKKLNKTDL AKLLIFYKDL ENSTTRP00000005755/1-651 WTLTTXXXXX XXXXXXKWLL SVLTWDQG-Q IKKKLNKTDL AKLLIFYKDL bmy_18716T0/1-687 WTLTTSLAQW PSEVSEKWLL SVLTWDQG-Q IKKKLNKTDL AKLLIFYKDL BACU018203/1-604 ---------- ---------- ---------- ------RTDL AKLLIFYKDL 551 600 ENSP00000300061/1-649 NQRSIMESPA NSIEMLLSNF GGQLGLWMSC SVVCVIEIIE VFFIDFFSII ENSBTAP00000013412/1-652 NQRSIMENPA NSIEQLLSNI GGQLGLWMSC SVVCVIEIIE VFFIDSLSII ENSTTRP00000005755/1-651 NQRSIVESPA NSIEMLLSNI GGQLGLWMSC SIVCIIEIIE VFFIDSLSIV bmy_18716T0/1-687 NQRSIVESPA NSIEMLLSNI GGQLGLWMSC SVVCVIEIVE VFLVDSLSIV BACU018203/1-604 NQRSIVESPA NSIEMLLSNI GGQLGLWMSC SVVCVIEIVE VFLVDSLSIV 601 650 ENSP00000300061/1-649 ARRQWQKAKE WWAWKQAPPC PEAPRSPQGQ DNPALDIDDD LPTFNSALHL ENSBTAP00000013412/1-652 ARHQWHKAKG WWARRRAPAC PEAPRAPQGR DNPSLDIDDD LPTFTSALSL ENSTTRP00000005755/1-651 ARHQWHKAKQ WWARRQASPC PEAPPSPQGQ DNLGLNIDDD LPTFTSALCL bmy_18716T0/1-687 ARHQWRKAKE WWARRQAPPW PEAPRSPQGR DNLGLNIDDD LPTFTSALCL BACU018203/1-604 ARHQWRKAKE WWARRQAPPW PEAPPSPQGR DNLGLDIDDD LPTFTSALCL 651 700 ENSP00000300061/1-649 PPALGTQVPG TPPPKYNTLR LERAFSNQLT DTQMLDEL ENSBTAP00000013412/1-652 PPAPGSQVPG TPPPRYNTLR LERAFSSQLT DTQTTFPH ENSTTRP00000005755/1-651 PPAPAAQVPG TPPPRYNTLR LERAFSRQLT GTEVSAES bmy_18716T0/1-687 PPAPAAQVPG TPPPRYNTLR LERDFPSQLA DTEVPAES BACU018203/1-604 PPAPAAQVPG TPPPRYNTLR LERDFPSQLA DTEVPAES