KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:50:26 2014 Check: 00 .. Name: ENSP00000240361/1-1497 Len: 1607 Check: 8767 Weight: 1.00 Name: bmy_03544T0/1-1241 Len: 1607 Check: 7777 Weight: 1.00 Name: ENSTTRP00000016288/1-1487 Len: 1607 Check: 5264 Weight: 1.00 Name: ENSBTAP00000013424/1-1493 Len: 1607 Check: 8734 Weight: 1.00 // 1 50 ENSP00000240361/1-1497 MSRAVRLPVP CPVQLGTLRN DSLEAQLHEY VKQGNYVKVK KILKKGIYVD bmy_03544T0/1-1241 ---------- -MGTLGGCRE DQL------- ---------K RL-------- ENSTTRP00000016288/1-1487 MSRAVHLPVP CPVQLGSLRN DSLEAQLHEY VKQGNYVKVK KILKKGVYVD ENSBTAP00000013424/1-1493 MSRAVHLPVP CPVQLGSLRN DSLEAQLHEY VKQGNYVKVK RILKKGIYVD 51 100 ENSP00000240361/1-1497 AVNSLGQTAL FVAALLGLRK FVDVLVDYGS DPNHRCFDGS TPVHAAAFSG bmy_03544T0/1-1241 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016288/1-1487 AVNSLGQTAL FIAALLGLTK LVDVLVDYGS DPNHRCFDGS TPIHAAAFSG ENSBTAP00000013424/1-1493 AVNSLGQTAL FIAALLGLTK LVDVLVDYGA DPNHRCFDGS TPVHAAAFSG 101 150 ENSP00000240361/1-1497 NQWILSKLLD AGGDLRLHDE RGQNPKTWAL TAGKERSTQI VEFMQRCASH bmy_03544T0/1-1241 --WKLQSILQ CRGP------ --QSPLFW-- ---------- ---------- ENSTTRP00000016288/1-1487 NQWILSKLLD AGGDLRLHDE RGQSPQTWAL AAGKERGTAM VEFMQRCAAH ENSBTAP00000013424/1-1493 NQWILSKLLD AGGDLRLHDE KGRNPQTWAL AAGKERSTVM VEFMQRCAAH 151 200 ENSP00000240361/1-1497 MQAIIQGFSY DLLKKIDSPQ RLVYSPSWCG GLVQGNPNGS PNRLLKAGVI bmy_03544T0/1-1241 ---------- ---------- RLIS------ ---------- ---------- ENSTTRP00000016288/1-1487 MQAIIQGFSY DLL-KIDSPQ RLICGLPRFG GLMQGSPNGS PNRLPKAGVI ENSBTAP00000013424/1-1493 MQAIIQGFS- DLLKKIDSPQ RLISGVPRFG GLMQGNPNGS PNRPPKAGVI 201 250 ENSP00000240361/1-1497 SAQNIYSFGF GKAMPWFQFY LTGATQMAYL GSLPVIGEKE VIQADDEPTF bmy_03544T0/1-1241 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016288/1-1487 SAQNIYSFGF GKAVLCFQFY LTGGTQLAYL GSLPVIGEKE VIQADDEPAF ENSBTAP00000013424/1-1493 SAQNIYSFGF GK------FY LTGGTQLAYL GSLPVIGEKE VIQADDEPTF 251 300 ENSP00000240361/1-1497 SFFSGPYMVM TNLVWNGSRV TVKELNLPTH PHCSRLRLAD LLIAEQEHSS bmy_03544T0/1-1241 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016288/1-1487 SFFSGPYMVM TXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000013424/1-1493 SFFSGPYMVM TNLVWNGSRV TVKELHLSTH PHCSRLRMAD LLIAEQEHSS 301 350 ENSP00000240361/1-1497 KLRHPYLLQL MAVCLSQDLE KTRLVYERIT IGTLFSVLHE RRSQFPVLHM bmy_03544T0/1-1241 ---------- ---CL----- ---------- ---------- QRAQFPVLRM ENSTTRP00000016288/1-1487 KLRHPHLLQL MAVCLFQGLQ KTRLVYERVA VGTLFSVLHE RRAQFPVLHM ENSBTAP00000013424/1-1493 KLRHPHVLQL MAVCLSPDLE KTRLVYERVT VGTLFSVLHE RRAQFPVLHM 351 400 ENSP00000240361/1-1497 EVIVHLLLQI SDALRYLHFQ GFIHRSLSSY AVHIISPGEA RLTNLEYMLE bmy_03544T0/1-1241 EVIVHLLLQT SDALRYLHSR GFIHRSLSSY AIHIVSTGEA RLTNLEYMME ENSTTRP00000016288/1-1487 EVIVHLLLQT SDALRYLHSR GFIHRSLSSY AIHIVSTGEA RLTNLEYMME ENSBTAP00000013424/1-1493 EVIVHLLLQI SDALRYLHSR GFIHRSLSSY AIHIVSTGEA RLTNLEYMME 401 450 ENSP00000240361/1-1497 SEDRGVQRDL TRVPLPTQLY NWAAPEVILQ KAATVKSDIY SFSMIMQEIL bmy_03544T0/1-1241 SQDGGVHKDL TRVSLPTQLY NWAAPEVILQ KAATVKSDIY SFSVIIQEIL ENSTTRP00000016288/1-1487 SRDGGVHKDL TRVSLPTQLY NWAAPEVILQ KAATVKSDVY SFSVIIQEIL ENSBTAP00000013424/1-1493 SQDGGAHRGL TRVPLPTQLY NWAAPEVIIQ KAATVKSDIY SFSVIVQEIL 451 500 ENSP00000240361/1-1497 TDDIPWKGLD GSVVKKAVVS GNYLEADVRL PKPYYDIVKS GIHVKQKDRT bmy_03544T0/1-1241 TDSIPWDDLD GSVIKETIVL GNYLEADVRL PKPYYDIVKS GIQVKQKDRT ENSTTRP00000016288/1-1487 TDSIPWDDLD GSVIKETIVS GNYLEADVRL PKPYYDIVKS GIQVKQKDRT ENSBTAP00000013424/1-1493 TDNIPWDGLD GSVIKETIVL GNYLEADVRL PKPYYDIVKS GLQVKQKDRT 501 550 ENSP00000240361/1-1497 MNLQDIRYIL KNDLKDFTGA QRTQPTESPR VQRYGLHPDV NVYLGLTSEH bmy_03544T0/1-1241 MNLQDIQYIL KNDLKDFIGA QRTQPTENSR VQRYELHPDV NVCLGVTSEH ENSTTRP00000016288/1-1487 MNLQDIQYIL KNDLKDFIGA QRTQPTESPR VQRYELHPDV NVCLGVTSEH ENSBTAP00000013424/1-1493 MNLQDIRYIM KNDLKDFIGA QRTQPTESPR VQRYEFHPDV NVCLGLTSEH 551 600 ENSP00000240361/1-1497 PRETPDMEII ELKEM-GSQP HSPRVHSLFT E-GTLDPQAP DPCLMARETQ bmy_03544T0/1-1241 PKETPDLQIK ELKKTAGGQL HSPRGHSAPT EKATPEPLVP DPSLEAQETQ ENSTTRP00000016288/1-1487 P-----LQIK ELKEA-GGQL HSPRGHSTLT KKATPEPLVP DPSLEAQETQ ENSBTAP00000013424/1-1493 PKETPNLEIK ELKET-GSQF HSPRGHSSPT GKATPEPPVP DVSPVAQQTH 601 650 ENSP00000240361/1-1497 NQDAPCPAPF MAEEASSPST GQPSLCSFEI NEIYSGCLIL EDDI-EEPPG bmy_03544T0/1-1241 NQGAASPACS VGEEARSPSP GQASLCSFEI NEIYSGCLDM GDDKEEEPPG ENSTTRP00000016288/1-1487 NQDAASSACS VGEEARSSSP DQASLCSFEI NEIYSGCLDM GDDKEEEPPG ENSBTAP00000013424/1-1493 RQDAASPACS VAEEARNPSP DQTSLCSFEI NEIYSGCLDT ADDPEEECPG 651 700 ENSP00000240361/1-1497 AASSLEADGP NQVDELKSME EELDKMEREA CCFGSEDESS SKAETEYSFD bmy_03544T0/1-1241 TGSSLEGARQ NQVDELKSME EESEKMEREA CCFCHEDSGS SEADTELSFE ENSTTRP00000016288/1-1487 TGSSLEGARQ NQVDELKSME EELEKMEREA CCFSHEDSSS SEADTELSFE ENSBTAP00000013424/1-1493 TGSSLEGAIP NQTDELKSME EELEKMEREV CCSCDEDESS SDADTELSCE 701 750 ENSP00000240361/1-1497 DWDWQNGSLS SLSLPESTRE AKSNLNNMST TEEYLISKCV LDLKIMQTIM bmy_03544T0/1-1241 DWDQQDGSLS SPSLPEPAGG AKGDVSNRSI TEEY-ISKCV LNLKISQTLM ENSTTRP00000016288/1-1487 DWGWQSGSLS SPSLPEPARG AKGNVSNRSL TEQY-ISKCV LNLKISQTLM ENSBTAP00000013424/1-1493 DWEWQNDALC SPSRPEPARG AKGATNNRSM TEEY-ISKCV LNLKISQTLI 751 800 ENSP00000240361/1-1497 HENDDRLRNI EQILDEVEMK QKEQEERMSL WATSREFTNA YKLPLAVGPP bmy_03544T0/1-1241 HQNASLLRNI QQKLDKLEMT QKEQEERWSL WA-SREFADV YDLPSALGPP ENSTTRP00000016288/1-1487 HQNANLLRSI QQKTDKLEMT QKEQEGR-SL WASSREFANG YDWPSALGPQ ENSBTAP00000013424/1-1493 HQNADLLRNV QQKIEKLEMI QKEQAERRSL WASSREFAGI HDSPSALGPP 801 850 ENSP00000240361/1-1497 SLNYIPPVLQ LSGGQKPDTS GNYPTLPRFP RM-------- ---------- bmy_03544T0/1-1241 ASSYAPPAMQ LPGDLQPDTE GNCPTLAKSP RTMRDFQGGH FGKRSKKRSS ENSTTRP00000016288/1-1487 ASSYIPPAMQ LPGNLQPDTE GNCPTLAKSP RT-------- ---------- ENSBTAP00000013424/1-1493 ASSYLPPVVQ RPGDQQLDPG GSGLTLARSP RT-------- ---------- 851 900 ENSP00000240361/1-1497 ---------- ---------- ------LPTL CDPGKQNTDE QFQCTQGAKD bmy_03544T0/1-1241 CGWAPFTPFP RVTEESTRDQ SEKGQQLPSL CGPGKQSRGE QFQPTHGAKD ENSTTRP00000016288/1-1487 ---------- ---------- ------VPSL CGPGKQSRGE QFQPTHGAKD ENSBTAP00000013424/1-1493 ---------- ---------- ------LPTL CGPGKQSRGE QFQPTHGAKA 901 950 ENSP00000240361/1-1497 SLETSRIQNT SSQGRPREST AQAKATQFNS ALFTLSSHRQ GPSASPSCHW bmy_03544T0/1-1241 SLERNRNQNT SSQGRPRESS ARTRTTQLRS ALLTVPRHPQ GPLTSSSPGW ENSTTRP00000016288/1-1487 SLERNRNQNT SSQGRPRESS AQTRTTQLSG ALLTVPGHPQ GPLTSSTPGR ENSBTAP00000013424/1-1493 SLERDRNQNT SSQGRPRESS PQSKTTQLSS ALLTVPSHPQ GSPTSSKPGQ 951 1000 ENSP00000240361/1-1497 DSTRMSVEPV SSEIYNAESR NKDD-GKVHL KWKMEVKEMA KKAATGQLTV bmy_03544T0/1-1241 GSSRISMESV SSKIYNTKSR NNEDAGERHL KWKTEVKEMA EKAATGQLAV ENSTTRP00000016288/1-1487 GSSRISMESV SSKICNTKSR NNEDAGEIHL KWKTEVKEMA EKAATGQLAV ENSBTAP00000013424/1-1493 DSTRISMQSV SSEIYNAKSR NNKDDGEIHL KWKTEVKEMA AKAATGQLTV 1001 1050 ENSP00000240361/1-1497 PPWHPQSSLT LESEAENEPD ALLQPPIRSP ENTDWQRVIE YHRENDEPRG bmy_03544T0/1-1241 PPWHPQSSGT LENEAENRPD PLLQPPIRVP EHVDWRQAVE HPKKNDEPGG ENSTTRP00000016288/1-1487 PPWHPQSSVT LENEAENRPD PLLQPPIKVP EHVDWQQAVE HPKKNDEPGG ENSBTAP00000013424/1-1493 PPWHPRSGVA LDSEAENEPD PLPQLPIRVS EHMDWQQAAD YLKKSDEPGG 1051 1100 ENSP00000240361/1-1497 NGKFDKTGNN DCDSDQHGRQ PRLGSFTSIR HPSPRQKEQP EHSEAFQASS bmy_03544T0/1-1241 NGKCDKTDSS DRNSDQHGRQ PGPRSFTGIR HLPPRKYEQP EHSEVFQAKS ENSTTRP00000016288/1-1487 NGKCDKTDSS DRNSDQHGRQ PGPRSSTGTR HLPPRKNEQP EHGEV-QESS ENSBTAP00000013424/1-1493 NDKCGQTDS- ---SDQRGRQ SGPQRFTSIR HLPPREDEQP EHSEVFQANS 1101 1150 ENSP00000240361/1-1497 DTLVAVEKSY SHQSMQSTCS PESS---EDI TDEFLTPDGE YFYSSTAQEN bmy_03544T0/1-1241 DAPVVVEKSY S--------- ---------- ---------- ---------- ENSTTRP00000016288/1-1487 DVPVVVEKSY SDQSVQPTCS PESS---EDI TDEVLTTDHE YFYSSTAQEN ENSBTAP00000013424/1-1493 DASVAVEKSY SGQSAQSTCS PESSEDTEDM TDEFLTPDHE YFYSSIAQEN 1151 1200 ENSP00000240361/1-1497 LALETSSPIE EDFEGIQGAF AQPQVS---- ---------- ---------- bmy_03544T0/1-1241 ----TSSPIE EDFEGIQHAC ARPQASGMQP SIFKTRVIHL PSHVARSRVV ENSTTRP00000016288/1-1487 LALETSSPIE EDFEGIQHAC ARPQAS---- ---------- ---------- ENSBTAP00000013424/1-1493 LALETSSPID EDFEGIQHAC ARPQAS---- ---------- ---------- 1201 1250 ENSP00000240361/1-1497 --------GE EKFQMRKILG KNAEILPRSQ FQPVRSTEDE QEETSKESPK bmy_03544T0/1-1241 SQQSEPGLGE EKFQMRKNLG KNAEILTRSQ FQPIRSTEDE QEETLKESPK ENSTTRP00000016288/1-1487 --------XX XXXXXXXXXX XXXXXXXXXX XXXXXXIEDE QEETLKESPK ENSBTAP00000013424/1-1493 --------GE EKFQMRKNLG KNSEILTKSQ FQPIRSPEGE QDETLKEPPK 1251 1300 ENSP00000240361/1-1497 ELKEKDISLT DIQDLSSISY EPDSSFKEAS CKTPKINHAP TSVSTPLSPG bmy_03544T0/1-1241 EMKEKDISLT DIQDLSSISY EQDGSFKEVS CKTPKINHAP TSVSTPLSPG ENSTTRP00000016288/1-1487 EMKEKDISLT DIQDLSSISY EQGGSFKEVS CKTPKINHAP TSVSTPLSPG ENSBTAP00000013424/1-1493 EVKEKDISLT DIQDLSSISC EHDGSFKEVS CKTPKINHAP TSVSTPLSPG 1301 1350 ENSP00000240361/1-1497 SVSSAASQYK DCLESITFQ- VKTEFASCWN SQEFIQTLSD DFISVRERAK bmy_03544T0/1-1241 SISSAASQYK DCLESITFQ- VKTGSTSFWN SQESI----- ---TVQEKAK ENSTTRP00000016288/1-1487 SISSASSQYK DCLESITF-- VKTGSTSFWK SQ-SIQTLSD KFTTVREKAK ENSBTAP00000013424/1-1493 SLSSVASQYK DCLESIPFQD TKTGSTSCGT SQESTQTLSD KFTSVREKAK 1351 1400 ENSP00000240361/1-1497 KLDSLLTSSE TPPSRLTGL- ---------- ---------- --KRLSSFIG bmy_03544T0/1-1241 SLDSLLTSSE TLPSRLTNLV MFVDFSKDPS AAIAYDALFI CIKRLPTFTG ENSTTRP00000016288/1-1487 SLDSLLTSSE TLP-RLTNL- ---------- ---------- --KRLPAFTG ENSBTAP00000013424/1-1493 SLDSLLTSSE VLPARLTNL- ---------- ---------- --KRLPAFTG 1401 1450 ENSP00000240361/1-1497 AGSPSLVKAC DSSPPHATQR RSLPKV--EA FSQHHIDELP PPSQELLDDI bmy_03544T0/1-1241 AGSSSIAKAP DTS-SRATQR RSLQKELVEA ISQHHIDELP PPSQELLDEI ENSTTRP00000016288/1-1487 AGSSSIAKAP DTS-SRATQR RSLPKX--XX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000013424/1-1493 AGSSSIAKAP DTS-RCATQR RSLPKELVEA ISQHHIDELP PPSQELLDEI 1451 1500 ENSP00000240361/1-1497 ELLKQQQGSS TVLHENTASD GGGTANDQRH LEEQETDSKK EDSSMLLSKE bmy_03544T0/1-1241 ----GESTST EGPIKPYFSH TEVWQLGPKH PMLSVLPLAG DIKVIGASCR ENSTTRP00000016288/1-1487 XHLKRQQASS TVRDENTASH LGITASDQRH LEEQETNSNK EDSSMLWTKE ENSBTAP00000013424/1-1493 EHLKGQQVSS TALDENTASR PGSTENDQRH LEEQETHSNK EDSSMLWTKE 1501 1550 ENSP00000240361/1-1497 TEDLGEDTER AHSTLDEDLE RWLQPPEESV EL-QDLPKGS ERETNIKDQK bmy_03544T0/1-1241 TTPLAQCRRV VQSQCGPPPS QQLSPGFCSW PLGTAVPQCA LQKLFLISLT ENSTTRP00000016288/1-1487 TQDLEEDTER AHSTLDEDLE RWLQPPEDST EL-QGLPKCS AXXXXXXXXX ENSBTAP00000013424/1-1493 TQDLEEDTER AHSTLDEDLE RWLQPPEDST QL-PDLPKGP AREASSKDQE 1551 1600 ENSP00000240361/1-1497 VGEEKRKRED SITPERRKSE GVLGTSEEDE LKSCFWKRLG WSESSRIIVL bmy_03544T0/1-1241 GIIWARFLGD VLYFEM---- GQRALGSDLE LTPTLLKGTH PQLQASVQGL ENSTTRP00000016288/1-1487 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXE LKPCFWKRLG WSEPSRIIVL ENSBTAP00000013424/1-1493 VGEKKRKGEE STKPEKRKPE SFLGTSEEEE LKPCFWKRLG WSEPSRIIVL 1601 1650 ENSP00000240361/1-1497 DQSDLSD bmy_03544T0/1-1241 KGRVL-- ENSTTRP00000016288/1-1487 DQSDLPD ENSBTAP00000013424/1-1493 DQSDLSD