KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:50:27 2014 Check: 00 .. Name: ENSBTAP00000013425/1-1052 Len: 1371 Check: 75 Weight: 1.00 Name: ENSTTRP00000001942/1-1050 Len: 1371 Check: 9109 Weight: 1.00 Name: bmy_21385T0/1-1267 Len: 1371 Check: 8026 Weight: 1.00 Name: BACU009707/1-1127 Len: 1371 Check: 290 Weight: 1.00 // 1 50 ENSBTAP00000013425/1-1052 --MKLVNIWL LLLVVLLCGK KHLGDRLEKK PFEKAPCPGC SHLALKVEFS ENSTTRP00000001942/1-1050 --MKLVHIWL LLLVVLLCGK KHLGDRLEKK SFEKAPCPGC SHLTLKVEFS bmy_21385T0/1-1267 MTMKLVHIWL LLLVVFLCGK KHLGDRLEKK SFEKAPCPGC SHLTLKVEFS BACU009707/1-1127 --MKLVHIWL LLLVVFLCGK KHLGDRLEKK SFEKAPCPGC SHLTLKVEFS 51 100 ENSBTAP00000013425/1-1052 STVVEYEYIV AFNGYFTAKA RNSFISSALK SSAIDNWRII PRNNPSSDYP ENSTTRP00000001942/1-1050 STVVEYEYIV AFNGYFTAKA RNSFISSALK SSAIDNWRII PRNNPSSDYP bmy_21385T0/1-1267 STVVEYEYIV AFNGYFTAKA RNSFISSALK SSAVDNWRII PRNNPSSDYP BACU009707/1-1127 STVVEYEYIV AFNGYFTAKA RNSFISSALK SSAIDNWRII PRNNPSSDYP 101 150 ENSBTAP00000013425/1-1052 SDFEVIQINE KQKAGLLTLE DHPNIKRVTP QRKVFRSLKY TEAEP-GSPC ENSTTRP00000001942/1-1050 SDFEVIQIKE KQKAGLLTLE DHPNIKRVTP QRKVFRSLKY TESDP-AAPC bmy_21385T0/1-1267 SDFEVIQIKE KQKAGLLTLE DHPNIKRVTP QRKVFRSLKY TESDPAAAPC BACU009707/1-1127 SDFEVIQIKE KQKAGLLTLE DHPNIKRVTP QRKVFRSLKY TESDPAAAPC 151 200 ENSBTAP00000013425/1-1052 NETRWSQKWQ SSRPLRRASL SLGSGFWHAT GRHSSRRLLR AIPRQVAQTL ENSTTRP00000001942/1-1050 NETRWSQKWQ SSRPLRRASL SLGSGFWHAT GRHSSRRLLR AIPRQVAQTL bmy_21385T0/1-1267 NETRWSQKWQ SSRPLRRASL SLGSGFWHAT GRHSSRRLLR AIPRQVAQTL BACU009707/1-1127 NETRWSQKWQ SSRPLRRASL SLGSGFWHAT GRHSSRRLLR AIPRQVAQTL 201 250 ENSBTAP00000013425/1-1052 QADVLWQMGY TGTNVRVAVF DTGLSEKHPH FKNVKERTNW TNERTLDDGL ENSTTRP00000001942/1-1050 QADVLWQMGY TGANVRVAVF DTGLSEKHPH FKNVKERTNW TNERTLDDGL bmy_21385T0/1-1267 QADVLWQMGY TGANVRVAVF DTGLSEKHPH FKNVKERTNW TNERTLDDGL BACU009707/1-1127 QADVLWQMGY TGANVRVAVF DTGLSEKHPH FKNVKERTNW TNERTLDDGL 251 300 ENSBTAP00000013425/1-1052 GHGTFVAGVI ASMRECQGFA PDAELHIFRV FTNNQVSYTS WFLDAFNYAI ENSTTRP00000001942/1-1050 GHGTFVAGVI ASMRECQGFA PDAELHIFRV FTNNQVSYTS WFLDAFNYAI bmy_21385T0/1-1267 GHGTFVAGVI ASMRECQGFA PDAELHIFRV FTNNQVSYTS WFLDAFNYAI BACU009707/1-1127 GHGTFVAGVI ASMRECQGFA PDAELHIFRV FTNNQVSYTS WFLDAFNYAI 301 350 ENSBTAP00000013425/1-1052 LKKIDVLNLS IGGPDFMDHP FVDKVWELTA NNVIMVSAIG NDGPLYGTLN ENSTTRP00000001942/1-1050 LKKIDVLNLS IGGPDFMDHP FVDKVWELTA NNVIMVSAIG NDGPLYGTLN bmy_21385T0/1-1267 LKKIDVLNLS IGGPDFMDHP FVDKVWELTA NNVIMVSAIG NDGPLYGTLN BACU009707/1-1127 LKKIDVLNLS IGGPDFMDHP FVDKVWELTA NNVIMVSAIG NDGPLYGTLN 351 400 ENSBTAP00000013425/1-1052 NPADQMDVIG VGGIDFEDNI ARFSSRGMTT WELPGGYGRV KPDIVTYGAG ENSTTRP00000001942/1-1050 NPADQMDVIG VGGIDFEDNI ARFSSRGMTT WELPGGYGRV KPDIVTYGAG bmy_21385T0/1-1267 NPADQMDVIG VGGIDFEDNI ARFSSRGMTT WELPGGYGRM KPDIVTYGAG BACU009707/1-1127 NPADQMDVIG VGGIDFEDNI ARFSSRGMTT WELPGGYGRM KPDIVTYGAG 401 450 ENSBTAP00000013425/1-1052 VRGSGVKGGC RALSGTSVAS PVVAGAVTLL VSTVQKRELV NPASMKQALI ENSTTRP00000001942/1-1050 VRGSGVKGGC RALSGTSVAS PVVAGAVTLL VSTVQRRELV NPASMKQALI bmy_21385T0/1-1267 VRGSGVKGGC RALSGTSVAS PVVAGAVTLL VSTVQRRELV NPASMKQALI BACU009707/1-1127 VRGSGVKGGC RGLWGTSVAS PVVAGAVTLL VSTVQRRELV NPASMKQALI 451 500 ENSBTAP00000013425/1-1052 ASARRLPGVN MFEQGHGKLD LLRAYQILNS YKPQASLSPS YIDLTECPYM ENSTTRP00000001942/1-1050 AAARRLPGVN MFEQGHGKLD LLRAYQILSS YKPQASLSPS YIDLTECPYM bmy_21385T0/1-1267 AAARRLPGVN MFEQGHGKLD LLRAY----- ---------- ---------- BACU009707/1-1127 AAARRLPGVN MFEQGHGKLD LLRAYQVLSS YKPQASLSPS YIDLTECPYM 501 550 ENSBTAP00000013425/1-1052 WPYCSQPIYY GGMPTIVNVT ILNGMGVTGR IVDKPEWQPY LPQHGDNIEV ENSTTRP00000001942/1-1050 WPYCSQPIYY GGMPTIVNVT ILNGMGVTGR IVDKPEWQPY LPQNGDSIEV bmy_21385T0/1-1267 -----QPIYY GGMPTIVNVT ILNGMGVTGR IVDKPEWQPY LPQNGDSIEV BACU009707/1-1127 WPYCSQPIYY GGMPTIVNVT ILNGMGVTGR IVDKPEWQPY LPQNGDSIEV 551 600 ENSBTAP00000013425/1-1052 AFSYSSVLWP WSGYLAISIS VTKKAASWEG IAQGHVMVTV ASPAEVDSNS ENSTTRP00000001942/1-1050 AFSYSSVLWP WSGYLAISIS VTKQAASWEG VAQGHVTVTV ASPAEVDSNS bmy_21385T0/1-1267 AFSYSSVLWP WSGYLAISIS VTKQAASWEG VAQGHVTVTV ASPAEVDSNS BACU009707/1-1127 AFSYSSVLWP WSGYLAISIS VTKQAASWEG VAQGHVTVTV ASPAEVDSNS 601 650 ENSBTAP00000013425/1-1052 GAEQTSTVKL PIKVKIIPAP PRSKRVLWDQ YHNLRYPPGY FPRDNLRMKN ENSTTRP00000001942/1-1050 GAEQTSTVKL PIKVKIIPAP PRSKRVLWDQ YHNLRYPPGY FPRDNLRMKN bmy_21385T0/1-1267 GAEQTSTVKL PIKVKIIPAP PRSKRVLWDQ YHNLRYPPGY FPRDNLRMKN BACU009707/1-1127 GAEQTSTVKL PIKVKIIPAP PRSKRVLWDQ YHNLRYPPGY FPRDNLRMKN 651 700 ENSBTAP00000013425/1-1052 DPLDWNGDHI HTNFRDMYQH LRSMGYFVEV LGSPFTCFDA NQY------- ENSTTRP00000001942/1-1050 DPLDWNGDHI HTNFRDMYQH LRSMGYFVEV LGSPFTCFDA SQY------- bmy_21385T0/1-1267 DPLDWNGDHI HTNFRDMYQH LRSMGYFVEV LGSPFTCFDA NQY------- BACU009707/1-1127 DPLDWNGDHI HTNFRDMYQH LRSMGYFVEV LGSPFTCFDA NQYGEGHEVL 701 750 ENSBTAP00000013425/1-1052 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001942/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_21385T0/1-1267 ---------- ---------- ---------- ---------- ---------- BACU009707/1-1127 ARRSRLAGEG WRSRAQTRVR AAGHRSSRGQ RSAVLLKRRG PVGAVAVLTP 751 800 ENSBTAP00000013425/1-1052 -----GTLLM VDSEEEYFPE EVAKLRRDVD NGLSLIVFSD WYNTSVMRKV ENSTTRP00000001942/1-1050 -----GTLLM VDSEEEYFPE EVAKLRRDVG NGLSLIVFSD WYNTSVMRKV bmy_21385T0/1-1267 -----GTLLM VDSEEEYFPE EAAKLRRDVD SGLSLIVFSD WYNTSVMRKV BACU009707/1-1127 ALSPAGTLLM VDSEEEYFPE EVAKLRRDVD SGLSLIVFSD WYNTSVMRKV 801 850 ENSBTAP00000013425/1-1052 KFYDENTRQW WMPDTGGANV PALNELLSVW NMAFSDGLYE GDFTLANHDM ENSTTRP00000001942/1-1050 KFYDENTRQW WMPDTGGANI PALNELLSVW NMGFSDGLYE GDFTLANHDM bmy_21385T0/1-1267 KFYDENTRQW WMPDTGGANI PALNELLSVW NMGFSDGLYE GDFTLANHDM BACU009707/1-1127 KFYDENTRQW WMPDTGGANI PALNELLSVW NMGFSDGLYE GDFTLANHDM 851 900 ENSBTAP00000013425/1-1052 YYASGCSIAK FPEDGIVITQ TFKD------ ---------- ---------- ENSTTRP00000001942/1-1050 YYASGCSIAK FPEDGIVITQ TFKD------ ---------- ---------- bmy_21385T0/1-1267 YYASGCSIAK FPEDGIVITQ TFKDQEPGFR TMCPSHLYEA VREYSVTNVM BACU009707/1-1127 YYASGCSIAK FPEDGIVITQ TFKD------ ---------- ---------- 901 950 ENSBTAP00000013425/1-1052 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001942/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_21385T0/1-1267 GSRKLTGWIH FLVQFVIFCN WKSGTVSLVE NDKNSGFLTH RFVSARVYFN BACU009707/1-1127 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000013425/1-1052 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001942/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_21385T0/1-1267 FENVNDPAFP VPWHNLPWEF ENLGYAGSKR TLLSETKLCQ TTRQCCVHFP BACU009707/1-1127 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000013425/1-1052 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001942/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_21385T0/1-1267 HFICFTAVSL PPNKENLVFP STQFLVGLYV ESRKRCIFRA TDILDVTSAV BACU009707/1-1127 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000013425/1-1052 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001942/1-1050 ---------- ---------- ---------- ---------- ---------- bmy_21385T0/1-1267 DAGSWCRRVS SPVCGMRLLQ GSCPLCVCVV RRHKPLSIIR RDKNLGLADK BACU009707/1-1127 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000013425/1-1052 ---------- ------QGLE VLKQETVVVE NVPILGLYQL PAEGGGRVVL ENSTTRP00000001942/1-1050 ---------- ------QXXX XXXXXXXVVE NVPILGLYQI PTEGGGRIVL bmy_21385T0/1-1267 KGEATPLGLG VIWTKCQGLE VLKQETAVVE NVPILGLYQI PAEGGGRIVL BACU009707/1-1127 ---------- ------QGLE VLKQETAVVE NVPILGLYQI PAEGGGRIVL 1151 1200 ENSBTAP00000013425/1-1052 YGDSNCLDDS HRQK------ ------DCFW LLDALLQFTS YGVTPPSLSH ENSTTRP00000001942/1-1050 YGDSNCLDDS HRQK------ ------DCFW LLDALLQFTS YGVTPPSLSH bmy_21385T0/1-1267 YGDSNCLDDS HRQK------ ------DCFW LLDALLQFTA YGVTPPSLSH BACU009707/1-1127 YGDSNCLDDS HRQKDLVAKQ PVAEPADCFW LLDALLQFTS YGVTPPSLSH 1201 1250 ENSBTAP00000013425/1-1052 SGARQRPPSG AGSAAPERME GNHLHRYSKV LEARLGGPEA RALPACPHLS ENSTTRP00000001942/1-1050 SGARQRPPSG ARSVAPERME GNHLHRYSKV LEARLGGPEP RALPACPHLS bmy_21385T0/1-1267 SGARQRPPSG AHSLAPERME GNHLHRYSKV LEARLGGPEP RALPACPHLS BACU009707/1-1127 SGARQRPPSG AHSVAPERME GNHLHRYSKV LEARLGGPEP RALPACPHLS 1251 1300 ENSBTAP00000013425/1-1052 WAKPQPLNET APSNLWKHQK LLSIDLDKVV LPNFRSNRPQ VRPLSPGESG ENSTTRP00000001942/1-1050 WAKPQPLNET APSNLWKHQK LLSIDLDKVV LPSFRPNRPQ VRPLSPGESG bmy_21385T0/1-1267 WAKPQPLNET APSNLWKHQK LLSIDLDKVV VPSFRPNRPQ VRPLSPGESG BACU009707/1-1127 WAKPQPLNET APSNLWKHQK LLSIDLDKVV VPSFRPNRPQ VRPLSPGESG 1301 1350 ENSBTAP00000013425/1-1052 AWDIPGGIMP GRYNQEVGQT IPVFAFLGAM VVLAFFVVQI NKAKSRPKRR ENSTTRP00000001942/1-1050 AWDIPGGIMP GRYNQEVGQT IPVFAFLGAM VVLAFFVVQI NKAKS-PKRR bmy_21385T0/1-1267 AWDIPGGIMP GRYNQEVGQT IPVFAFLGAM VVLAFFVVQI NKAKSRPKRR BACU009707/1-1127 AWDIPGGIMP GRYNQEVGQT IPVFAFLGAM VVLAFFVVQI NKAKSRPKRR 1351 1400 ENSBTAP00000013425/1-1052 KPRVKRPQLV QQVHPPKAPS V ENSTTRP00000001942/1-1050 -PRVKRPQLV QQVHPPKAPS V bmy_21385T0/1-1267 KPRVKRPQLV QQVHPPKAPS V BACU009707/1-1127 KPRVKRPQLV QQVHPPKAPS V