KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:27 2014 Check: 00 .. Name: ENSP00000380901/1-703 Len: 719 Check: 7388 Weight: 1.00 Name: ENSBTAP00000013427/1-704 Len: 719 Check: 7222 Weight: 1.00 Name: ENSTTRP00000014311/1-705 Len: 719 Check: 645 Weight: 1.00 Name: bmy_10789T0/1-716 Len: 719 Check: 9520 Weight: 1.00 Name: BACU009668/1-705 Len: 719 Check: 1806 Weight: 1.00 // 1 50 ENSP00000380901/1-703 ---------- ----MLGTLT PLSSL--LLL LLVLVLGCGP RASSGGGAGG ENSBTAP00000013427/1-704 ---------- ----MQGALT PLSSLPPPLL LLLL-LGCGQ RAAASGGAAG ENSTTRP00000014311/1-705 ---------- ----MRGALT SLSSLPPPLL LLLLVLGCGL RAAASGGAAG bmy_10789T0/1-716 MAPLVPPCSK PKDAMRGALT ---SLPPPLL LLLLVLGCGL RAAASGGAAG BACU009668/1-705 ---------- ----MRGALT SLPSLPPPLL LLLLVLGCGL RAAASGGAAG 51 100 ENSP00000380901/1-703 AAGYAPVKYI QPMQKGPVGP PFREGKGQYL EMPLPLLPMD LKGEPGPPGK ENSBTAP00000013427/1-704 AAGYPPAQYV QPMHKGPVGP PFREGKGQYL EMPLPLLPMD LKGEPGPPGK ENSTTRP00000014311/1-705 AAGYPPVQYV QPMHKGPVGP PFREGKGQYL EMPLPLLPMD LKGEPGPPGK bmy_10789T0/1-716 AAGYPPVQYV QPMHKGPVGP PFREGKGQYL EMPLPLLPMD LKGEPGPPGK BACU009668/1-705 AAGYPPVQYV QPMHKGPVGP PFREGKGQYL EMPPPLLPMD LKGEPGPPGK 101 150 ENSP00000380901/1-703 PGPRGPPGPP GFPGKPGMGK PGLHGQPGPA GPPGFSRMGK AGPPGLPGKV ENSBTAP00000013427/1-704 PGPRGPPGPP GFPGKPGTGK PGLHGQPGPA GPPGFSRMGK AGPPGLPGKV ENSTTRP00000014311/1-705 PGPRGPPGPP GFPGKPGTGK PGLHGQPGPA GPPGFSRMGK AGPPGLPGKV bmy_10789T0/1-716 PGPRGPPGPP GFPGKPGTGK PGLHGQPGPA GPPGFSRMGK AGPPGLPGKV BACU009668/1-705 PGPRGPPGPP GFPGKPGTGK PGLHGQPGPA GPPGFSRMGK AGPPGLPGKV 151 200 ENSP00000380901/1-703 GPPGQPGLRG EPGIRGDQGL RGPPGPPGLP GPSGITIPGK PGAQGVPGPP ENSBTAP00000013427/1-704 GPPGQPGLRG EPGIRGDQGL RGPPGPPGLP GPSGIAVPGK PGPQGVPGPP ENSTTRP00000014311/1-705 GPPGQPGLRG EPGIRGDQGL RGPPGPPGLP GPSGIAVPGK PGPQGVPGPP bmy_10789T0/1-716 GPPGQPGLRG EPGIRGDQGL RGPPGPPGLP GPSGIAVPGK PGPQGVPGPP BACU009668/1-705 GPPGQPGLRG EPGIRGDQGL RGPPGPPGLP GPSGIAVPGK PGPQGVPGPP 201 250 ENSP00000380901/1-703 GFQGEPGPQG EPGPPGDRGL KGDNGVGQPG LPGAPGQGGA PGPPGLPGPA ENSBTAP00000013427/1-704 GFGGEPGPQG EPGPPGDRGL KGENGVGQPG LPGAPGQGGA PGPPGLPGPA ENSTTRP00000014311/1-705 GFGGEPGPQG EPGPPGDRGL KGENGVGQPG LPGAPGQGGA PGPPGLPGPA bmy_10789T0/1-716 GFGGEPGPQG EPGPPGDRGL KGENGVGQPG LPGAPGQGGA PGPPGLPGPA BACU009668/1-705 GFGGEPGPQG EPGPPGDRGL KGENGVGQPG LPGAPGQGGA PGPPGLPGPA 251 300 ENSP00000380901/1-703 GLGKPGLDGL PGAPGDKGES GPPGVPGPRG EPGAVGPKGP PGVDGVGVPG ENSBTAP00000013427/1-704 GLGKPGLDGL PGAPGDKGDT GPPGVPGPRG EPGALGPKGP PGVDGVGAPG ENSTTRP00000014311/1-705 GLGKPGLDGF PGAPGDKGES GPPGLPGPRG EPGALGPKGP PGLDGMGVPG bmy_10789T0/1-716 GLGKPGLDGL PGAPGDKGES GSPGLPGPRG EPGALGPKGP PGLDGMGVPG BACU009668/1-705 GLGKPGLDGL PGAPGDKGES GSPGLPGPRG EPGALGPKGP PGLDGMGVPG 301 350 ENSP00000380901/1-703 AAGLPGPQGP SGAKGEPGTR GPPGLIGPTG YGMPGLPGPK GDRGPAGVPG ENSBTAP00000013427/1-704 SAGLPGPQGP PGAKGEPGTR GPPGLIGPTG YGMPGLPGPK GDRGPAGVPG ENSTTRP00000014311/1-705 SAGVPGPQGP RGAKGEPGTR GPPGLIGPTG YGMPGLPGPK GDRGPAGVPG bmy_10789T0/1-716 SAGVPGPQGP PGAKGEPGTR GPPGLIGPTG YGMPGLPGPK GDRGPAGVPG BACU009668/1-705 SAGVPGPQGP PGAKGEPGTR GPPGLIGPTG YGMPGLPGPK GDRGPAGVPG 351 400 ENSP00000380901/1-703 LLGDRGEPGE DGEPGEQGPQ GLGGPPGLPG SAGLPGRRGP PGPKGEAGPG ENSBTAP00000013427/1-704 LLGDRGEPGE DGEPGEQGPQ GLGGPPGLPG SAGLPGRRGV PGPKGETGPI ENSTTRP00000014311/1-705 LLGDRGEPGE DGEPGEQGPQ GLGGPPGLPG SAGLPGRRGP LGPKGEMGPG bmy_10789T0/1-716 LLGDRGEPGE DGEPGEEGPQ GLGGPPGLPG STGLPGRRGP PGPKGETGPG BACU009668/1-705 LLGDRGEPGE DGEPGEEGPQ GLGGPPGLPG SAGLPGRRGP PGPKGETGLG 401 450 ENSP00000380901/1-703 GPPGVPGIRG DQGPSGLAGK PGVPGERGLP GAHGPPGPTG PKGEPGFTGR ENSBTAP00000013427/1-704 GPPGVPGIRG DQGPSGLAGK PGLPGERGLP GAHGPPGPTG PKGEPGFTGR ENSTTRP00000014311/1-705 GPPGVPGIRG DQGPSGLAGK PGLPGERGLP GAHGPPGPTG PKGEPGFTGR bmy_10789T0/1-716 GPPGVPGIRG DQGPSGLAGK PGLPGERGLP GAHGPPGPTG PKGEPGFSGR BACU009668/1-705 GPPGVPGIRG DQGPSGLAGK PGLPGERGLP GAHGPPGPTG PKGEPGFTGR 451 500 ENSP00000380901/1-703 PGGPGVAGAL GQKGDLGLPG QPGLRGPSGI PGLQGPAGPI GPQGLPGLKG ENSBTAP00000013427/1-704 PGGPGAAGAL GQKGDLGLPG QPGLRGPSGI PGLQGPAGPI GPQGLPGLKG ENSTTRP00000014311/1-705 PGGPGVAGAL GQKGDLGLPG QPGLRGPSGI PGLQGPTGPI GPQGLPGLKG bmy_10789T0/1-716 PGGPGVAGAL GQKGDLGLPG QPGLRGPSGI PGLQGPAGPI GPQGLPGLKG BACU009668/1-705 PGGPGVAGAL GQKGDLGLPG QPGLRGPSGI PGLQGPAGPI GPQGLPGLKG 501 550 ENSP00000380901/1-703 EPGLPGPPGE GRAGEPGTAG PTGPPGVPGS PGITGPPGPP GPPGPPGAPG ENSBTAP00000013427/1-704 EPGLPGPPGE GKVGEPGVAG PTGPPGVPGS PGLTGPPGPP GPPGPPGAPG ENSTTRP00000014311/1-705 EPGLPGAPGE GKVGEPGMAG PTGPPGVPGS PGLTGPPGPP GPPGPPGAPG bmy_10789T0/1-716 EPGLPGPPGE GKVGEPGMAG PTGPPGVPGF PGLTGPPGPP GPPGPPGAPG BACU009668/1-705 EPGLPGPPGE GKVGEPGMAG PTGPPGVPGS PGLTGPPGPP GPPGPPGAPG 551 600 ENSP00000380901/1-703 AFDETGIAGL HLPNGGVEGA VLGKGGKPQF GLGELSAHAT PAFTAVLTSP ENSBTAP00000013427/1-704 AFDETGIAGL QLPNGGVEGA VLGKGVKPQL GLGELSAHAT PAFTAVLTSP ENSTTRP00000014311/1-705 AFDETGIAGL HLPNGGVQGA VLGKGTKPRF GLGELSAHAT PAFTAVLTSP bmy_10789T0/1-716 AFDETGITGL HLPNGGVQGA VLGKGTKPRF GLGELSAHAT PAFTAVLTSP BACU009668/1-705 AFDETGITGL HLPNGGVQGA VLGKGTKPRF GLGELSAHAT PAFTAVLTSP 601 650 ENSP00000380901/1-703 FPASGMPVKF DRTLYNGHSG YNPATGIFTC PVGGVYYFAY HVHVKGTNVW ENSBTAP00000013427/1-704 FPASGMPVKF DRTLYNGHSG YNPATGIFTC PVGGVYYFAY HVHVKGTNVW ENSTTRP00000014311/1-705 FPASGMPVKF DRTLYNGHSG YNPATGIFTC PVGGVYYFAY HVHVKGTNVW bmy_10789T0/1-716 FPASGMPVKF DRTLYNGHSG YNPATGIFTC PVGGVYYFAY HVHVKGTNVW BACU009668/1-705 FPASGMPVKF DRTLYNGHSG YNPATGIFTC PVGGVYYFAY HVHVKGTNVW 651 700 ENSP00000380901/1-703 VALYKNNVPA TYTYDEYKKG YLDQASGGAV LQLRPNDQVW VQMPSDQANG ENSBTAP00000013427/1-704 VALYKNNVPA TYTYDEYKKG YLDQASGGAV LQLRPNDQVW VQMPSDQANG ENSTTRP00000014311/1-705 VALYKNNVPA TYTYDEYKKG YLDQASGGAV LQLRPNDQVW VQMPSDQANG bmy_10789T0/1-716 VALYKNNVPA TYTYDEYKKG YLDQASGGAV LQLRPNDQVW VQMPSDQANG BACU009668/1-705 VALYKNNVPA TYTYDEYKKG YLDQASGGAV LQLRPNDQVW VQMPSDQANG 701 750 ENSP00000380901/1-703 LYSTEYIHSS FSGFLLCPT ENSBTAP00000013427/1-704 LYSTEYIHSS FSGFLLCPT ENSTTRP00000014311/1-705 LYSTEYIHSS FSGFLLCPT bmy_10789T0/1-716 LYSTEYIHSS FSGFLLCPT BACU009668/1-705 LYSTEYIHSS FSGFLLCPT