KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:29 2014 Check: 00 .. Name: ENSP00000216139/1-421 Len: 469 Check: 9448 Weight: 1.00 Name: ENSBTAP00000013434/1-362 Len: 469 Check: 8512 Weight: 1.00 Name: bmy_14606T0/1-217 Len: 469 Check: 1024 Weight: 1.00 Name: ENSTTRP00000013280/1-356 Len: 469 Check: 4679 Weight: 1.00 Name: BACU013526/1-414 Len: 469 Check: 3425 Weight: 1.00 // 1 50 ENSP00000216139/1-421 MVEMLPTAIL LVLAVSVVAK DNATCDGPCG LRFRQNPQGG VRIVGGKAAQ ENSBTAP00000013434/1-362 LAEMLPTAIL LVLAVSVVTR DNTTCDGPCG TRFRQNRQGG MRIIGGQDAA bmy_14606T0/1-217 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013280/1-356 LVEMLPTAVL LVLAVSVVAR DNTTCDGPCG LRFRQNPQGG MRIIGGQPAA BACU013526/1-414 ---------- ---------- ---------- ---------- TRIIGGQAAA 51 100 ENSP00000216139/1-421 HGAWPWMVSL QIFTY-NSHR YHTCGGSLLN SRWVLTAAHC FVGKNNVHDW ENSBTAP00000013434/1-362 HGSWPWMVSL QIFTYHNNRR YHVCGGSLLN AHWLLTAAHC FRIKKKVTDW bmy_14606T0/1-217 ---------- ---------- ---------- --MLVTP--- ---------- ENSTTRP00000013280/1-356 LGAWPWMVSL QVLTYHDNRR YHVCGGTLLN AHWLLTAAHC FRSKTKVTDW BACU013526/1-414 LGAWPWMVSL QIFTYHNNRR YHVCGGTLLN SHWLLTAAHC FRNKKKVTDW 101 150 ENSP00000216139/1-421 RLVFGAKEIT YGNNKPVKAP LQERYVEKII IHEKYNSATE GNDIALVEIT ENSBTAP00000013434/1-362 RLIFGAKEVE WGSNKPVKPP LQERYVEKII IHEKYSASSE ANDIALIKIT bmy_14606T0/1-217 ---------- ---------- ---------- ---------- ---LAVLEVK ENSTTRP00000013280/1-356 RLIFGAKEVV WGSNKPVKPP LQERYAEKII IHEKYSPGSE ANDIALMKIT BACU013526/1-414 RLIFGAKEVV WGSNKPVKPP LQERYVEKII IHEKYSPGSE ANDIALMKIT 151 200 ENSP00000216139/1-421 PPISCGRFIG PGCLPHFKAG LPRGSQSCWV AGWGYIEEKA PRPSSILMEA ENSBTAP00000013434/1-362 PPVICGHFIG PGCLPQFRAG PPRVPQTCWV AGWGFLRENA RRTSPVLQEA bmy_14606T0/1-217 -----GKYVD -AC-----PS PTQAPARC-- ---------S PRTSPILQEA ENSTTRP00000013280/1-356 PPVPCGYFIG PGCLPQFRAG PPRIPQTCWV AGWGFLEENV PRISPILQEA BACU013526/1-414 PPVPCGHFIG PGCLPQFRAG PPRIPQTCWV AGWGFLKDNA PRTSPILQEA 201 250 ENSP00000216139/1-421 RVDLIDLDLC NSTQWYNGRV QPTNVCAGYP VGKIDTCQGD SGGPLMCKDS ENSBTAP00000013434/1-362 HVDLIDLDLC NSTRWYNGRI RSTNVCAGYP EGKIDTCQGD SGGPLMCKDS bmy_14606T0/1-217 RVDIIDLDLC NSTMWYNGRI RSTNVCAGYP EGKIDTCQGD SGGPLMCSES ENSTTRP00000013280/1-356 RVNIIDLDLC NSTSWYNGRI RSTNVCAGYP EGKIDTCQGD SGGPLMCRES BACU013526/1-414 RVDIIDLDLC NSTMWYNGRI RSTNVCAGYP EGKIDTCQGD SGGPLMCRES 251 300 ENSP00000216139/1-421 KESAYVVVGI TSWGVGCARA KRPGIYTATW PYLNWIASKI GSNALRMIQS ENSBTAP00000013434/1-362 VENSYVVVGI TSWGVGCARA KRPGVYTSTW SYLNWIASKI GSNTVHMIQL bmy_14606T0/1-217 VENSYVVVGI TSWGVGCARA KRPGVYTSTW SYLNWIASKI GSNALHMIQL ENSTTRP00000013280/1-356 VENSYVVVGI TSWGVGCARA KRPGVYTSTW SYLNWIASKI GSNALHMIQL BACU013526/1-414 VENSYVVVGI TSWGVGCARA KRPGVYTSTW SYLNWIASKI GSNALHMIQL 301 350 ENSP00000216139/1-421 ATPPPPTTRP PPIRPPFSHP ISAHLPWYFQ PPPRPLPPRP PAAQPRPPPS ENSBTAP00000013434/1-362 PTAPPASTPA AQASPGSVQP -SIRPPWFFQ HVPQPPPSQQ AIAVASTAHV bmy_14606T0/1-217 PTPPPPSTPA PPAKPTSTQP -SLRPPWYFQ QPPRPPPSQS PAA------- ENSTTRP00000013280/1-356 PTPPPPSTPA PPTKPASTQP -SIRPPWYFK HPPRPPPSQP P--VARPQPA BACU013526/1-414 PTPPPPSTPA PPAKPTSTQP -SIRPPWYFQ QPPRPPPSQS PTAVARPQPT 351 400 ENSP00000216139/1-421 PP-------- ---------- ---------- ---------- ---------P ENSBTAP00000013434/1-362 PR-------- ---------- ---------- ---------- ---------P bmy_14606T0/1-217 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013280/1-356 AP-------- ---------- ---------- ---------- ---------P BACU013526/1-414 APXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXP 401 450 ENSP00000216139/1-421 PPPPPASPLP PPPPPPPPTP SSTTKLPQGL SFAKRLQQLI EVLKGKTYSD ENSBTAP00000013434/1-362 PQLNP----- ---------- ---------- ---------- ---------- bmy_14606T0/1-217 ---------- ---------- ---------- ----RLQQLI EALKGKAFFD ENSTTRP00000013280/1-356 PPPPP----- ---------- ---------- ---------- ---------- BACU013526/1-414 PPPPP----- ---------P QPSTKPPKAL SFAKRLQQLI EALKGKAFFD 451 500 ENSP00000216139/1-421 GKNHYDMETT ELPELTSTS ENSBTAP00000013434/1-362 --------SS SLP------ bmy_14606T0/1-217 RKGTYEMETT DIPEQPASS ENSTTRP00000013280/1-356 ---------- --P------ BACU013526/1-414 RKGTYEMETT DIPEQPASS