KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:32 2014 Check: 00 .. Name: ENSTTRP00000012158/1-580 Len: 580 Check: 4837 Weight: 1.00 Name: BACU009994/1-478 Len: 580 Check: 6432 Weight: 1.00 Name: ENSBTAP00000013449/1-523 Len: 580 Check: 8967 Weight: 1.00 Name: bmy_19255T0/1-346 Len: 580 Check: 4031 Weight: 1.00 Name: ENSP00000353864/1-580 Len: 580 Check: 6772 Weight: 1.00 // 1 50 ENSTTRP00000012158/1-580 MSDGLDNEEK PPAPPLRMNS NNRDSSALNH SSKPLPMAPE EKNKKARLRS BACU009994/1-478 MSDSLDNEEK PPAPPLRMNS NNRDSSALNH SSKPLPMAPE EKNKKARLRS ENSBTAP00000013449/1-523 ---------- ---------- ---------- ------MAPE EKNKKARLRS bmy_19255T0/1-346 MSDGLDNEEK PPAPPLRMNS NNRDSSALNH SSKPLPMAPE EKNKKARLRS ENSP00000353864/1-580 MSDGLDNEEK PPAPPLRMNS NNRDSSALNH SSKPLPMAPE EKNKKARLRS 51 100 ENSTTRP00000012158/1-580 IFPGGGDKXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXNSPFQTSR BACU009994/1-478 IFPGGGDKTN KKKEKERPEI SLPSDFEHTI HVGFDAVTGE FT-------- ENSBTAP00000013449/1-523 IFPGGGDKTN KKKEKERPEI SLPSDFEHTI HVGFDAVTGE FT-------- bmy_19255T0/1-346 IFPGGGDKTN KKKEKERPEI SLPSDFEHTI HVGFDAVTGE FT-------- ENSP00000353864/1-580 IFPGGGDKTN KKKEKERPEI SLPSDFEHTI HVGFDAVTGE FTNSPFQTSR 101 150 ENSTTRP00000012158/1-580 PVTVASSQSE GKMPDLYGSQ MCPGKLPEGI PEQWARLLQT SNITKLEQKK BACU009994/1-478 ---------- ---------- --------GI PEQWARLLQT SNITKLEQKK ENSBTAP00000013449/1-523 ---------- ---PDLYGSQ MCPGKLPEGI PEQWARLLQT SNITKLEQKK bmy_19255T0/1-346 ---------- ---------- ---------- ---------- ---------- ENSP00000353864/1-580 PVTVASSQSE GKMPDLYGSQ MCPGKLPEGI PEQWARLLQT SNITKLEQKK 151 200 ENSTTRP00000012158/1-580 NPQAVLDVLK FYDSKETVNN QKYMSFXXXX KSAHGYIAAH PSSTKTASEP BACU009994/1-478 NPQAVLDVLK FYDSKETVNN QKYMSFTSGD KSAHGYIAAH P--------- ENSBTAP00000013449/1-523 NPQAVLDVLK FYDSKETVNN QKYMSFTSGD KSAHGYIAAH PSSTKTASEP bmy_19255T0/1-346 ---------- ---------- ---------- ---------- --STKTASEP ENSP00000353864/1-580 NPQAVLDVLK FYDSKETVNN QKYMSFTSGD KSAHGYIAAH PSSTKTASEP 201 250 ENSTTRP00000012158/1-580 PLAPPVSEEE DEEEEEEEDD NEPPPVIAPR PEHTKSIYTR SVVESIASPA BACU009994/1-478 ---------- ---------- ---------- -----SIYTR SVVESIASPA ENSBTAP00000013449/1-523 PLAPPVSEEE DEEEEEEEDD NEPPPVIAPR PEHTKSIYTR SVVESIASPA bmy_19255T0/1-346 PLAPPVSEEE DEEEEEEEDD NEPPPVIAPR PEHTKS---- ---------- ENSP00000353864/1-580 PLAPPVSEEE DEEEEEEEDE NEPPPVIAPR PEHTKSIYTR SVVESIASPA 251 300 ENSTTRP00000012158/1-580 APNKEVTPPS AENANSSTLY RNTDRQRKKS KMTDEEILEK LRSIVSVGDP BACU009994/1-478 APNKEVTPPS AENANSSTLY RNTDRQRKKS KMTDEEILEK LRSIVSVGDP ENSBTAP00000013449/1-523 APNKEVTPPS AENANSSTLY RNTDRQRKKS KMTDEEILEK LRSIVSVGDP bmy_19255T0/1-346 ---------- ---------- ---------- ---------- ---------- ENSP00000353864/1-580 VPNKEVTPPS AENANSSTLY RNTDRQRKKS KMTDEEILEK LRSIVSVGDP 301 350 ENSTTRP00000012158/1-580 KKKYTRFEKI GQGASGTVYT ALDIATGQEV AIKQMNLQQQ PKKELIINEI BACU009994/1-478 KKKYTRFEKI GQGASGTVYT ALDIATGQEV AIKQMNLQQQ PKKELIINEI ENSBTAP00000013449/1-523 KKKYTRFEKI GQGASGTVYT ALDIATGQEV AIKQMNLQQQ PKKELIINEI bmy_19255T0/1-346 ---------- ---------- ---------V AIKQMNLQQQ PKKELIINEI ENSP00000353864/1-580 KKKYTRFEKI GQGASGTVYT ALDIATGQEV AIKQMNLQQQ PKKELIINEI 351 400 ENSTTRP00000012158/1-580 LVMRENKNPN IVNYLDSYLV GDELWVVMEY LAGGSLTDVV TETCMDEGQI BACU009994/1-478 LVMRENKNPN IVNYLDSYLV GDELWVVMEY LAGGSLTDVV TETCMDEGQI ENSBTAP00000013449/1-523 LVMRENKNPN IVNYLDSYLV GDELWVVMEY LAGGSLTDVV TETCMDEGQI bmy_19255T0/1-346 LVMRENKNPN IVNYLDSYLV GDELWVVMEY LAGGSLTDVV TETCMDEGQI ENSP00000353864/1-580 LVMRENKNPN IVNYLDSYLV GDELWVVMEY LAGGSLTDVV TETCMDEGQI 401 450 ENSTTRP00000012158/1-580 AAVCRECLQA LDFLHSNQVI HRDIKSDNIL LGMDGSVKLT DFGFCAQITP BACU009994/1-478 AAVCRE---- ---------- --------TR LKSGPAERSA DFGFCAQITP ENSBTAP00000013449/1-523 AAVCRECLQA LDFLHSNQVI HRDIKSDNIL LGMDGSVKLT DFGFCAQITP bmy_19255T0/1-346 AAVCRE---- ---------- ---------- ---------- -------ITP ENSP00000353864/1-580 AAVCRECLQA LDFLHSNQVI HRDIKSDNIL LGMDGSVKLT DFGFCAQITP 451 500 ENSTTRP00000012158/1-580 EQSKRSTMVG TPYWMAPEVV TRKAYGPKVD IWSLGIMAIE MVEGEPPYLN BACU009994/1-478 EQSKRSTMVG TPYWMAPEVV TRKAYGPKVD IWSLGIMAIE MVEGEPPYLN ENSBTAP00000013449/1-523 EQSKRSTMVG TPYWMAPEVV TRKAYGPKVD IWSLGIMAIE MVEGEPPYLN bmy_19255T0/1-346 EQSKRSTMVG TPYWMAPEVV TRKAYGPKVD IWSLGIMAIE MVEGEPPYLN ENSP00000353864/1-580 EQSKRSTMVG TPYWMAPEVV TRKAYGPKVD IWSLGIMAIE MVEGEPPYLN 501 550 ENSTTRP00000012158/1-580 ENPLRALYLI ATNGTPELQN PERLSAVFRD FLNRCLEMDV DRRGSAKELL BACU009994/1-478 ENPLRALYLI ATNGTPELQN PERLSAVFRD FLNRCLEMDV DRRGSAKELL ENSBTAP00000013449/1-523 ENPLRALYLI ATNGTPELQN PERLSAVFRD FLNRCLEMDV DRRGSAKELL bmy_19255T0/1-346 ENPLRALYLI ATNGTPELQN PERLSAVFRD FLNRCLEMDV DRRGSAKELL ENSP00000353864/1-580 ENPLRALYLI ATNGTPELQN PERLSAVFRD FLNRCLEMDV DRRGSAKELL 551 600 ENSTTRP00000012158/1-580 QHPFLKLAKP LSSLTPLIIA AKEAIKNSSR BACU009994/1-478 QHPFLKLAKP LSSLTPLIIA AKEAIKNSSR ENSBTAP00000013449/1-523 QHPFLKLAKP LSSLTPLIIA AKEAIKNSSR bmy_19255T0/1-346 QHPFLKLAKP LSSLTPLIIA AKEAIKNSSR ENSP00000353864/1-580 QHPFLKLAKP LSSLTPLIIA AKEAIKNSSR