KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:32 2014 Check: 00 .. Name: ENSP00000291906/1-889 Len: 889 Check: 1235 Weight: 1.00 Name: ENSBTAP00000013461/1-889 Len: 889 Check: 7826 Weight: 1.00 Name: ENSTTRP00000011005/1-861 Len: 889 Check: 4591 Weight: 1.00 Name: bmy_08609T0/1-796 Len: 889 Check: 8727 Weight: 1.00 Name: BACU016242/1-889 Len: 889 Check: 9126 Weight: 1.00 // 1 50 ENSP00000291906/1-889 MEEGAPRQPG PSQWPPEDEK EVIRRAIQKE LKIKEGVENL RRVATDRRHL ENSBTAP00000013461/1-889 MEEGAQRQPG AGHQPLEDEK EVIRRAIQKE LKIKEGVENL RRVATDRRHL ENSTTRP00000011005/1-861 MEEGAPQQPG AGQWPPGDEK EAIRRAIQKE LKIKEGVENL RRVATDRRHL bmy_08609T0/1-796 MEEGAPQQPG AGQWPPGDEK EAIRRAIQKE LKIKEGVENL RRVATDRRHL BACU016242/1-889 MEEGAPQQPG AGQWPPGDEK EAIRRAIQKE LKIKEGVENL RRVATDRRHL 51 100 ENSP00000291906/1-889 GHVQQLLRSS NRRLEQLHGE LRELHARILL PGPGPGPAEP VASGPRPWAE ENSBTAP00000013461/1-889 GHVQQLLRSS NRRLEQLHGE LRELHARILL PGPGLGPAEP AASGPRPLAE ENSTTRP00000011005/1-861 GHVQQLLRSS NRRLEQLHGE LRELHARILL PGPGPGPAEP AASGPRPLAE bmy_08609T0/1-796 GHVQQLLRSS NRRLEQLHGE LRELHARILL PGPGPGPAEP AASGPWPLAE BACU016242/1-889 GHVQQLLRSS NRRLEQLHGE LRELHARILL PGPGPGPAEP AASGPWPLAE 101 150 ENSP00000291906/1-889 QLRARHLEAL RRQLHVELKV KQGAENMTHT CASGTPKERK LLAAAQQMLR ENSBTAP00000013461/1-889 QARARHLEAL QRQLQVELKV KQGAENMTHT YASGTPKERK LLAAAQQMLQ ENSTTRP00000011005/1-861 QPRARHLEAL QRQLQVELKV KQGAENMTHT YASGTPKXXX XXXAA-QMLQ bmy_08609T0/1-796 QPRTRHLEAL QRQLQVELKV KQGAENMTHT YASGTPKERK LLAAAQQMLQ BACU016242/1-889 QPRARHLEAL QRQLQVELKV KQGAENMTHT YASGTPKERK LLAAAQQMLQ 151 200 ENSP00000291906/1-889 DSQLKVALLR MKISSLEASG SPEPGPELLA EELQHRLHVE AAVAEGAKNV ENSBTAP00000013461/1-889 DSQLKVALLR MKISSLEASG SPEPGPELMV EELRHRLRIE AAVAEGAKNV ENSTTRP00000011005/1-861 DSQLMVALLR MKISSLEASG SPEPGPELLV EELRHRLRIE AAVAEGAKNV bmy_08609T0/1-796 DSQLKVALLR MKISSLEASG SPEPGPELLV EELRHRLRIE AAVAEGAKNV BACU016242/1-889 DSQLKVALLR MKISSLEASG SPEPGPELLV EELRHRLRIE AAVAEGAKNV 201 250 ENSP00000291906/1-889 VKLLSSRRTQ DRKALAEAQA QLQESSQKLD LLRLALEQLL EQLPPAHPLR ENSBTAP00000013461/1-889 VKLLGSRRTQ DRKVLAEAQA QLQESCQKLD LLRLALEQLL ERLPPAHPLR ENSTTRP00000011005/1-861 VKLLGSRRTQ DRKVLAEAQA QLQESSQKLD LLRLALEQLL EGLPPAHPLR bmy_08609T0/1-796 VKLLGSRRTQ DRKVLAEAQA QLQESSQKLD LLRLALEQLL EGLPPAHPLR BACU016242/1-889 VKLLGSRRTQ DRKVLAEAQA QLQESSQKLD LLRLALEQLL EGLPPAHPLR 251 300 ENSP00000291906/1-889 SRVTRELRAA VPGYPQPSGT PVKPTALTGT LQVRLLGCEQ LLTAVPGRSP ENSBTAP00000013461/1-889 GRVARELRTA ASGNPQPSGT LVKPTAMTGT LQVRLLGCEQ LLIAVPGRSP ENSTTRP00000011005/1-861 GRVARELRTA VSGNPQPSGT LVKPTAMTGT LQVHLLGCEQ LLTAVPGRSP bmy_08609T0/1-796 GRVARELRTA VSGNAQPSGT LVKPTAMTGT LQVHLLGCEQ LLTAVPGRSP BACU016242/1-889 GRVARELRTA VSGNAQPSGT LVKPTAMTGT LQVHLLGCEQ LLTAVPGRSP 301 350 ENSP00000291906/1-889 AAALASSPSE GWLRTKAKHQ RGRGELASEV LAVLKVDNRV VGQTGWGQVA ENSBTAP00000013461/1-889 AAALAGSPSQ GWLRSRAKQQ RGGGELASEV LAVLKVDNRV VGQTGWGPVA ENSTTRP00000011005/1-861 VAALAGTPSQ GWLWSRAKQQ RGGGELASEV LAVLKVDNRI VGQTAWGPVA bmy_08609T0/1-796 VAALAGSPSQ GWLRSRAKQQ RGGGELASEV LAVLKVDNRI VGQTGWGPVA BACU016242/1-889 VAALAGSPSQ GWLRSRAKQQ RGGGELASEV LAVLKVDNRI VGQTGWGPVA 351 400 ENSP00000291906/1-889 EQSWDQTFVI PLERARELEI GVHWRDWRQL CGVAFLRLED FLDNACHQLS ENSBTAP00000013461/1-889 KQSWDQNFVI ALERARELEI GVHWRDWRQL CGVAFLRLED FLDNACHQLS ENSTTRP00000011005/1-861 KQSWDQTFVV PLERARELEI GVHWRDWRQL CGVAFLRLED FLDNACHQLS bmy_08609T0/1-796 KQSWDQTFVV PLERARELEI GVRWRDWRQL CGVAFLRLED FLDNACHQLS BACU016242/1-889 KQSWDQTFVV PLERARELEI GVRWRDWRQL CGVAFLRLED FLDNACHQLS 401 450 ENSP00000291906/1-889 LSLVPQGLLF AQVTFCDPVI ERRPRLQRQE RIFSKRRGQD FLRASQMNLG ENSBTAP00000013461/1-889 LSLVPQGQLF AQVTFCDPVI ERRPRLQRQK RIFSKRRGQD FLRASQMNLS ENSTTRP00000011005/1-861 LSLVPQGLLF VQVTFCDPVI ERRPRLQRQK RIFSKRRGQD FLRASQMNLS bmy_08609T0/1-796 LSLVPQGLLF AQVTFCDPVI ERRPRLQRQK RIFSKRRGQD FLRASQMNLS BACU016242/1-889 LSLVPQGLLF AQVTFCDPVI ERRPRLQRQK RIFSKRRGQD FLRASQMNLS 451 500 ENSP00000291906/1-889 MAAWGRLVMN LLPPCSSPST ISPPKGCPRT PTTLREASDP ATPSNFLPKK ENSBTAP00000013461/1-889 MAAWGRLVMS LLPPCSSPST ISPPKTCSQT PATPQRATDP DSPSNFPPKK ENSTTRP00000011005/1-861 MAAWGRLVMS LLPPCSSPST ISPPKGCSQT PATPRGAADP ASPSNFPPKK bmy_08609T0/1-796 MAAWGRLVMS LLPPCSSPST ISPPKGCSQT PATPRGAAAP ASP------- BACU016242/1-889 MAAWGRLVMS LLPPCSSPST ISPPKGCSQT PATPRGAAAP ASPSNFPPKK 501 550 ENSP00000291906/1-889 TPLGEEMTPP PKPPRLYLPQ EPTSEETPRT KRPHMEPRTR RGPSPPASPT ENSBTAP00000013461/1-889 TPLREEIQPP PKPPRLYLAQ EPTPEEMPRT KRPHMEPRIR LEPPLPAPAT ENSTTRP00000011005/1-861 TPLREEIQSP PKPPRLYLPQ EPTPEEMPST KRPHMEPRTR LEPSLPASAT bmy_08609T0/1-796 ---------- ---------- ---------- ---------- ---------- BACU016242/1-889 TPLREEIQCP PKPPRLYLPQ EPTPEEMPST KRPHMEPRTR LEPSLPASAT 551 600 ENSP00000291906/1-889 RKPPRLQDFR CLAVLGRGHF GKVLLVQFKG TGKYYAIKAL KKQEVLSRDE ENSBTAP00000013461/1-889 RKPPRLQDFR CLAVLGRGHF GKVLLVQFKG TGQYYAIKAL KKQEVLSRDE ENSTTRP00000011005/1-861 RKPPRLQDFR CLAVLGRGHF GK------QG V--------- ---------- bmy_08609T0/1-796 RKPPRLQDFR CLAVLGRGHF GKVLLVQFKG TGQYYAIKAL KKQEVLSRDE BACU016242/1-889 RKPPRLQDFR CLAVLGRGHF GKVLLVQFKG TGQYYAIKAL KKQEVLSREE 601 650 ENSP00000291906/1-889 IESLYCEKRI LEAVGCTGHP FLLSLLACFQ TSSHACFVTE FVPGGDLMMQ ENSBTAP00000013461/1-889 IESLYCEKRI LEAVGCTGHP FLLPLLACFQ TSSHACFVTE FAPGGDLMMQ ENSTTRP00000011005/1-861 --PLYCEKRI LEAVGRMGHP FLLSLLACFH TSSHACFVTE FVPGGDLMMQ bmy_08609T0/1-796 IESLYCEKRI LEAVGRMGHP FLLSLLACFH TSSHACFVTE FVPGGDLMMQ BACU016242/1-889 IESLYCEKRI LEAVGRMGHP FLLSLLACFH TSSHACFVTE FVPGGDLMMQ 651 700 ENSP00000291906/1-889 IHEDVFPEPQ ARFYVACVVL GLQFLHEKKI IYRDLKLDNL LLDAQGFLKI ENSBTAP00000013461/1-889 IHEDVFPEPQ ARFYLACVVL GLQFLHEQKI IYRDLKLDNL LLDAQGFLKI ENSTTRP00000011005/1-861 IHEDVFPEPQ ARFYLACVVL GLQFLHEQKI IYRDLKLDNL LLDAQGFLKI bmy_08609T0/1-796 IHEDVFPEPQ ARFYLACVVL GLQFLHEQKI IYRDLKLDNL LLDAQGFLKI BACU016242/1-889 IHEDVFPEPQ ARFYLACVVL GLQFLHEQKI IYRDLKLDNL LLDAQGFLKI 701 750 ENSP00000291906/1-889 ADFGLCKEGI GFGDRTSTFC GTPEFLAPEV LTQEAYTRAV DWWGLGVLLY ENSBTAP00000013461/1-889 ADFGLCKEGI GFGDRTSTFC GTPEFLAPEV LTQEAYTRAV DWWGLGVLLY ENSTTRP00000011005/1-861 ADFGLCKEGI GFGDRTSTFC GTPEFLAPEV LTQEAYTRAV DWWGLGVLLY bmy_08609T0/1-796 ADFGLCKEGI GFGDRTSTFC GTPEFLAPEV LTQEAYTRAV DWWGLGVLLY BACU016242/1-889 ADFGLCKEGI GFGDRTSTFC GTPEFLAPEV LTQEAYTRAV DWWGLGVLLY 751 800 ENSP00000291906/1-889 EMLVGECPFP GDTEEEVFDC IVNMDAPYPG FLSVQGLEFI QKLLQKCPEK ENSBTAP00000013461/1-889 EMLVGECPFP GDTEEEVFDC IVNAEAPYPR FLSVQGLELI QKLLQKCPEK ENSTTRP00000011005/1-861 EMLVGECPFP GDTEEEVFDC IVNAEAPYPR FLSVQGLELI QKLLQKCPEK bmy_08609T0/1-796 EMLVGE---- ---------- ---------- ---------- --LLQKCPEK BACU016242/1-889 EMLVGECPFP GDTEEEVFDC IVNAEAPYPR FLSVQGLELI QKLLQKCPEK 801 850 ENSP00000291906/1-889 RLGAGEQDAE EIKVQPFFRT TNWQALLART IQPPFVPTLC GPADLRYFEG ENSBTAP00000013461/1-889 RLGAGERDAE EIKTQPFFRT TDWQALLARA VQPPFVPTLC GPTDLRYFEG ENSTTRP00000011005/1-861 RLGAGERDAE EIKTQPFFRT TDWQALLARA VRPPFVPTLC GPTDLRYFEG bmy_08609T0/1-796 RLGAGEQDAE EIKTQPFFRT TDWQALLARA VQPPFVPTLC GPTDLRYFEG BACU016242/1-889 RLGAGERDAE EIKTQPFFRT TDWQALLARA VRPPFVPTLC GPTDLRYFEG 851 900 ENSP00000291906/1-889 EFTGLPPALT PPAPHSLLTA RQQAAFRDFD FVSERFLEP ENSBTAP00000013461/1-889 EFTGLPPALT PPDPRSPLTA RQQAAFRDFD FVSERFLEP ENSTTRP00000011005/1-861 EFTGLPPALT PPDARSPLTA RQQAAFRDFD FVSQRFLEP bmy_08609T0/1-796 EFTGLPPALT PPDARSPLTA RQQAAFRDFD FVSQRFLEP BACU016242/1-889 EFTGLPPALT PPDARSPLTA RQQAAFRDFD FVSQRFLEP