KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:50:32 2014 Check: 00 ..
Name: ENSP00000291906/1-889 Len: 889 Check: 1235 Weight: 1.00
Name: ENSBTAP00000013461/1-889 Len: 889 Check: 7826 Weight: 1.00
Name: ENSTTRP00000011005/1-861 Len: 889 Check: 4591 Weight: 1.00
Name: bmy_08609T0/1-796 Len: 889 Check: 8727 Weight: 1.00
Name: BACU016242/1-889 Len: 889 Check: 9126 Weight: 1.00
//
1 50
ENSP00000291906/1-889 MEEGAPRQPG PSQWPPEDEK EVIRRAIQKE LKIKEGVENL RRVATDRRHL
ENSBTAP00000013461/1-889 MEEGAQRQPG AGHQPLEDEK EVIRRAIQKE LKIKEGVENL RRVATDRRHL
ENSTTRP00000011005/1-861 MEEGAPQQPG AGQWPPGDEK EAIRRAIQKE LKIKEGVENL RRVATDRRHL
bmy_08609T0/1-796 MEEGAPQQPG AGQWPPGDEK EAIRRAIQKE LKIKEGVENL RRVATDRRHL
BACU016242/1-889 MEEGAPQQPG AGQWPPGDEK EAIRRAIQKE LKIKEGVENL RRVATDRRHL
51 100
ENSP00000291906/1-889 GHVQQLLRSS NRRLEQLHGE LRELHARILL PGPGPGPAEP VASGPRPWAE
ENSBTAP00000013461/1-889 GHVQQLLRSS NRRLEQLHGE LRELHARILL PGPGLGPAEP AASGPRPLAE
ENSTTRP00000011005/1-861 GHVQQLLRSS NRRLEQLHGE LRELHARILL PGPGPGPAEP AASGPRPLAE
bmy_08609T0/1-796 GHVQQLLRSS NRRLEQLHGE LRELHARILL PGPGPGPAEP AASGPWPLAE
BACU016242/1-889 GHVQQLLRSS NRRLEQLHGE LRELHARILL PGPGPGPAEP AASGPWPLAE
101 150
ENSP00000291906/1-889 QLRARHLEAL RRQLHVELKV KQGAENMTHT CASGTPKERK LLAAAQQMLR
ENSBTAP00000013461/1-889 QARARHLEAL QRQLQVELKV KQGAENMTHT YASGTPKERK LLAAAQQMLQ
ENSTTRP00000011005/1-861 QPRARHLEAL QRQLQVELKV KQGAENMTHT YASGTPKXXX XXXAA-QMLQ
bmy_08609T0/1-796 QPRTRHLEAL QRQLQVELKV KQGAENMTHT YASGTPKERK LLAAAQQMLQ
BACU016242/1-889 QPRARHLEAL QRQLQVELKV KQGAENMTHT YASGTPKERK LLAAAQQMLQ
151 200
ENSP00000291906/1-889 DSQLKVALLR MKISSLEASG SPEPGPELLA EELQHRLHVE AAVAEGAKNV
ENSBTAP00000013461/1-889 DSQLKVALLR MKISSLEASG SPEPGPELMV EELRHRLRIE AAVAEGAKNV
ENSTTRP00000011005/1-861 DSQLMVALLR MKISSLEASG SPEPGPELLV EELRHRLRIE AAVAEGAKNV
bmy_08609T0/1-796 DSQLKVALLR MKISSLEASG SPEPGPELLV EELRHRLRIE AAVAEGAKNV
BACU016242/1-889 DSQLKVALLR MKISSLEASG SPEPGPELLV EELRHRLRIE AAVAEGAKNV
201 250
ENSP00000291906/1-889 VKLLSSRRTQ DRKALAEAQA QLQESSQKLD LLRLALEQLL EQLPPAHPLR
ENSBTAP00000013461/1-889 VKLLGSRRTQ DRKVLAEAQA QLQESCQKLD LLRLALEQLL ERLPPAHPLR
ENSTTRP00000011005/1-861 VKLLGSRRTQ DRKVLAEAQA QLQESSQKLD LLRLALEQLL EGLPPAHPLR
bmy_08609T0/1-796 VKLLGSRRTQ DRKVLAEAQA QLQESSQKLD LLRLALEQLL EGLPPAHPLR
BACU016242/1-889 VKLLGSRRTQ DRKVLAEAQA QLQESSQKLD LLRLALEQLL EGLPPAHPLR
251 300
ENSP00000291906/1-889 SRVTRELRAA VPGYPQPSGT PVKPTALTGT LQVRLLGCEQ LLTAVPGRSP
ENSBTAP00000013461/1-889 GRVARELRTA ASGNPQPSGT LVKPTAMTGT LQVRLLGCEQ LLIAVPGRSP
ENSTTRP00000011005/1-861 GRVARELRTA VSGNPQPSGT LVKPTAMTGT LQVHLLGCEQ LLTAVPGRSP
bmy_08609T0/1-796 GRVARELRTA VSGNAQPSGT LVKPTAMTGT LQVHLLGCEQ LLTAVPGRSP
BACU016242/1-889 GRVARELRTA VSGNAQPSGT LVKPTAMTGT LQVHLLGCEQ LLTAVPGRSP
301 350
ENSP00000291906/1-889 AAALASSPSE GWLRTKAKHQ RGRGELASEV LAVLKVDNRV VGQTGWGQVA
ENSBTAP00000013461/1-889 AAALAGSPSQ GWLRSRAKQQ RGGGELASEV LAVLKVDNRV VGQTGWGPVA
ENSTTRP00000011005/1-861 VAALAGTPSQ GWLWSRAKQQ RGGGELASEV LAVLKVDNRI VGQTAWGPVA
bmy_08609T0/1-796 VAALAGSPSQ GWLRSRAKQQ RGGGELASEV LAVLKVDNRI VGQTGWGPVA
BACU016242/1-889 VAALAGSPSQ GWLRSRAKQQ RGGGELASEV LAVLKVDNRI VGQTGWGPVA
351 400
ENSP00000291906/1-889 EQSWDQTFVI PLERARELEI GVHWRDWRQL CGVAFLRLED FLDNACHQLS
ENSBTAP00000013461/1-889 KQSWDQNFVI ALERARELEI GVHWRDWRQL CGVAFLRLED FLDNACHQLS
ENSTTRP00000011005/1-861 KQSWDQTFVV PLERARELEI GVHWRDWRQL CGVAFLRLED FLDNACHQLS
bmy_08609T0/1-796 KQSWDQTFVV PLERARELEI GVRWRDWRQL CGVAFLRLED FLDNACHQLS
BACU016242/1-889 KQSWDQTFVV PLERARELEI GVRWRDWRQL CGVAFLRLED FLDNACHQLS
401 450
ENSP00000291906/1-889 LSLVPQGLLF AQVTFCDPVI ERRPRLQRQE RIFSKRRGQD FLRASQMNLG
ENSBTAP00000013461/1-889 LSLVPQGQLF AQVTFCDPVI ERRPRLQRQK RIFSKRRGQD FLRASQMNLS
ENSTTRP00000011005/1-861 LSLVPQGLLF VQVTFCDPVI ERRPRLQRQK RIFSKRRGQD FLRASQMNLS
bmy_08609T0/1-796 LSLVPQGLLF AQVTFCDPVI ERRPRLQRQK RIFSKRRGQD FLRASQMNLS
BACU016242/1-889 LSLVPQGLLF AQVTFCDPVI ERRPRLQRQK RIFSKRRGQD FLRASQMNLS
451 500
ENSP00000291906/1-889 MAAWGRLVMN LLPPCSSPST ISPPKGCPRT PTTLREASDP ATPSNFLPKK
ENSBTAP00000013461/1-889 MAAWGRLVMS LLPPCSSPST ISPPKTCSQT PATPQRATDP DSPSNFPPKK
ENSTTRP00000011005/1-861 MAAWGRLVMS LLPPCSSPST ISPPKGCSQT PATPRGAADP ASPSNFPPKK
bmy_08609T0/1-796 MAAWGRLVMS LLPPCSSPST ISPPKGCSQT PATPRGAAAP ASP-------
BACU016242/1-889 MAAWGRLVMS LLPPCSSPST ISPPKGCSQT PATPRGAAAP ASPSNFPPKK
501 550
ENSP00000291906/1-889 TPLGEEMTPP PKPPRLYLPQ EPTSEETPRT KRPHMEPRTR RGPSPPASPT
ENSBTAP00000013461/1-889 TPLREEIQPP PKPPRLYLAQ EPTPEEMPRT KRPHMEPRIR LEPPLPAPAT
ENSTTRP00000011005/1-861 TPLREEIQSP PKPPRLYLPQ EPTPEEMPST KRPHMEPRTR LEPSLPASAT
bmy_08609T0/1-796 ---------- ---------- ---------- ---------- ----------
BACU016242/1-889 TPLREEIQCP PKPPRLYLPQ EPTPEEMPST KRPHMEPRTR LEPSLPASAT
551 600
ENSP00000291906/1-889 RKPPRLQDFR CLAVLGRGHF GKVLLVQFKG TGKYYAIKAL KKQEVLSRDE
ENSBTAP00000013461/1-889 RKPPRLQDFR CLAVLGRGHF GKVLLVQFKG TGQYYAIKAL KKQEVLSRDE
ENSTTRP00000011005/1-861 RKPPRLQDFR CLAVLGRGHF GK------QG V--------- ----------
bmy_08609T0/1-796 RKPPRLQDFR CLAVLGRGHF GKVLLVQFKG TGQYYAIKAL KKQEVLSRDE
BACU016242/1-889 RKPPRLQDFR CLAVLGRGHF GKVLLVQFKG TGQYYAIKAL KKQEVLSREE
601 650
ENSP00000291906/1-889 IESLYCEKRI LEAVGCTGHP FLLSLLACFQ TSSHACFVTE FVPGGDLMMQ
ENSBTAP00000013461/1-889 IESLYCEKRI LEAVGCTGHP FLLPLLACFQ TSSHACFVTE FAPGGDLMMQ
ENSTTRP00000011005/1-861 --PLYCEKRI LEAVGRMGHP FLLSLLACFH TSSHACFVTE FVPGGDLMMQ
bmy_08609T0/1-796 IESLYCEKRI LEAVGRMGHP FLLSLLACFH TSSHACFVTE FVPGGDLMMQ
BACU016242/1-889 IESLYCEKRI LEAVGRMGHP FLLSLLACFH TSSHACFVTE FVPGGDLMMQ
651 700
ENSP00000291906/1-889 IHEDVFPEPQ ARFYVACVVL GLQFLHEKKI IYRDLKLDNL LLDAQGFLKI
ENSBTAP00000013461/1-889 IHEDVFPEPQ ARFYLACVVL GLQFLHEQKI IYRDLKLDNL LLDAQGFLKI
ENSTTRP00000011005/1-861 IHEDVFPEPQ ARFYLACVVL GLQFLHEQKI IYRDLKLDNL LLDAQGFLKI
bmy_08609T0/1-796 IHEDVFPEPQ ARFYLACVVL GLQFLHEQKI IYRDLKLDNL LLDAQGFLKI
BACU016242/1-889 IHEDVFPEPQ ARFYLACVVL GLQFLHEQKI IYRDLKLDNL LLDAQGFLKI
701 750
ENSP00000291906/1-889 ADFGLCKEGI GFGDRTSTFC GTPEFLAPEV LTQEAYTRAV DWWGLGVLLY
ENSBTAP00000013461/1-889 ADFGLCKEGI GFGDRTSTFC GTPEFLAPEV LTQEAYTRAV DWWGLGVLLY
ENSTTRP00000011005/1-861 ADFGLCKEGI GFGDRTSTFC GTPEFLAPEV LTQEAYTRAV DWWGLGVLLY
bmy_08609T0/1-796 ADFGLCKEGI GFGDRTSTFC GTPEFLAPEV LTQEAYTRAV DWWGLGVLLY
BACU016242/1-889 ADFGLCKEGI GFGDRTSTFC GTPEFLAPEV LTQEAYTRAV DWWGLGVLLY
751 800
ENSP00000291906/1-889 EMLVGECPFP GDTEEEVFDC IVNMDAPYPG FLSVQGLEFI QKLLQKCPEK
ENSBTAP00000013461/1-889 EMLVGECPFP GDTEEEVFDC IVNAEAPYPR FLSVQGLELI QKLLQKCPEK
ENSTTRP00000011005/1-861 EMLVGECPFP GDTEEEVFDC IVNAEAPYPR FLSVQGLELI QKLLQKCPEK
bmy_08609T0/1-796 EMLVGE---- ---------- ---------- ---------- --LLQKCPEK
BACU016242/1-889 EMLVGECPFP GDTEEEVFDC IVNAEAPYPR FLSVQGLELI QKLLQKCPEK
801 850
ENSP00000291906/1-889 RLGAGEQDAE EIKVQPFFRT TNWQALLART IQPPFVPTLC GPADLRYFEG
ENSBTAP00000013461/1-889 RLGAGERDAE EIKTQPFFRT TDWQALLARA VQPPFVPTLC GPTDLRYFEG
ENSTTRP00000011005/1-861 RLGAGERDAE EIKTQPFFRT TDWQALLARA VRPPFVPTLC GPTDLRYFEG
bmy_08609T0/1-796 RLGAGEQDAE EIKTQPFFRT TDWQALLARA VQPPFVPTLC GPTDLRYFEG
BACU016242/1-889 RLGAGERDAE EIKTQPFFRT TDWQALLARA VRPPFVPTLC GPTDLRYFEG
851 900
ENSP00000291906/1-889 EFTGLPPALT PPAPHSLLTA RQQAAFRDFD FVSERFLEP
ENSBTAP00000013461/1-889 EFTGLPPALT PPDPRSPLTA RQQAAFRDFD FVSERFLEP
ENSTTRP00000011005/1-861 EFTGLPPALT PPDARSPLTA RQQAAFRDFD FVSQRFLEP
bmy_08609T0/1-796 EFTGLPPALT PPDARSPLTA RQQAAFRDFD FVSQRFLEP
BACU016242/1-889 EFTGLPPALT PPDARSPLTA RQQAAFRDFD FVSQRFLEP