KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:50:38 2014 Check: 00 .. Name: ENSP00000255992/1-1029 Len: 1343 Check: 7639 Weight: 1.00 Name: ENSTTRP00000002491/1-991 Len: 1343 Check: 3964 Weight: 1.00 Name: bmy_21018T0/1-1230 Len: 1343 Check: 4854 Weight: 1.00 Name: ENSBTAP00000013482/1-1025 Len: 1343 Check: 1105 Weight: 1.00 // 1 50 ENSP00000255992/1-1029 ---------- ---------- ---------M RENYETLVSV GTAELLPLSA ENSTTRP00000002491/1-991 ---------- ---------- ---------M RENYETLAS- GTVELLPLSA bmy_21018T0/1-1230 MAFQDLAVRF SEDEWRLLGE GQRALYLDVM RENYETLASL GTVELLPLSA ENSBTAP00000013482/1-1025 ---------- ---------- ---------M RENYDTLASL GTAEPLPLSA 51 100 ENSP00000255992/1-1029 FLSPSEPGRA VGGGSHADEG QEPAGCGDPQ GGQPRHSLHL TALVQLVKEI ENSTTRP00000002491/1-991 FLCPSEPGGA VGGGGCAADG QDPPRGGGPL GGAPQHSLHL SALVQLVKEI bmy_21018T0/1-1230 FLSPSEPGGA MGGGSCAGDG PEPPRGGGPL GGAPQHSLHL SALVQLVKEI ENSBTAP00000013482/1-1025 FLSPSEPGGA VGARSRAGDR QEPPQGGGPL GGAPQHSLHL SALVQLVQEI 101 150 ENSP00000255992/1-1029 PEFLFGEVKG AMDSPESESR GASLDGERAS PEAAAAREPC PLRGLLSCLP ENSTTRP00000002491/1-991 PEFLFGEV-- ---SPES--R GASLDGEGAS PEAAVMGDTC PLRGLLGCLP bmy_21018T0/1-1230 PEFLFGEV-- ---SLES--G GASLDGEGAS PEAAVMGDTC PLRGLLGCLP ENSBTAP00000013482/1-1025 PEFLFGEG-- ---SPES-SG GASLDGYPAP PSAAVTEDTC PLRDLLRCLP 151 200 ENSP00000255992/1-1029 DGPTSQPHLA TTPTDSSCSS GPTGDGVQGS PLPIKTADKP WPTRKEGPGA ENSTTRP00000002491/1-991 DTPVGRPGLA AMPSGSSSHS PPRARG-QGS PLPIKTADVP RPVEEESPGA bmy_21018T0/1-1230 DTPVGRPGLA AMPSGSSSSS PPRARG-QGS PLPIKTADMP RPVEEESPGA ENSBTAP00000013482/1-1025 DTPVGLLGLA AKPSGSSSSS TPGAGG-PGS PLPIKTANKP RPVEEGSPGA 201 250 ENSP00000255992/1-1029 LGGEPSPPTH SPSRRKSHRG QERGTSE--- ---------- ---------- ENSTTRP00000002491/1-991 PSQEPSPPTC SPGRRKSHRN QERGATG--- ---------- ---------- bmy_21018T0/1-1230 PSEEPSPPTC SPGRWKSHRN QERGTTGAGK GLAFLRAGPA PELSRWEKGG ENSBTAP00000013482/1-1025 PGREPSPATC SQGSSKSRRN PERGTPG--- ---------- ---------- 251 300 ENSP00000255992/1-1029 ---------- ---------- ---------- ---AGISPGN SPLQGLINCL ENSTTRP00000002491/1-991 ---------- ---------- ---------- ---AGTSPGN SPLQGLINCL bmy_21018T0/1-1230 IVWLPPQPPD SPTWRSHSCR IQGCPERAGL AGAAGICPGN SPLQGLINCL ENSBTAP00000013482/1-1025 ---------- ---------- ---------- AGAVSISPGH SPLQGLINCL 301 350 ENSP00000255992/1-1029 KEILVPGPRH PETSPSFLP- PLPSLGTSRL TRADLGPGSP PWAVKTEAVS ENSTTRP00000002491/1-991 KEILEPGPQH PERPLRFLP- PARSMGASQL SGAELRPGSP PWAVKTETAS bmy_21018T0/1-1230 KEILEPGPQH PERPLSLLP- PVPSLGASQL TGAEPRPGSP PWAVKTETAS ENSBTAP00000013482/1-1025 KEILEPGPQG PEGPRSSPPP PAPSLGASQL TRAELGPGGP PWAVKTEAAS 351 400 ENSP00000255992/1-1029 GDCPLQGLLH CLKELPEAQD RHPSPSGVGN RRLQENPGAW KRGSGGPGYL ENSTTRP00000002491/1-991 GACPLQSLLN CLKEIPEARD KQPSPSGARD PWLQEDPGAX XXXXXXXXXX bmy_21018T0/1-1230 GDCPLQGLLN CLKEIPEARD ---SPSGARD PRLQEDPGAW KRNSGGLRSL ENSBTAP00000013482/1-1025 GDCPLQSLLN CLKEIPEARD RHPSPLGASD PRLQEDPGAW KRNSGGLQPL 401 450 ENSP00000255992/1-1029 LTPPPHPDLG AGGLLS-VKM ENSWVQSPPG PASCQPGRQP LSPSATGDTR ENSTTRP00000002491/1-991 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_21018T0/1-1230 QTPPPGPGPG AGSVLSAVKV EDGWAQGPPE PASCQLSKRT HGPSAAGGPG ENSBTAP00000013482/1-1025 QTPPPGPGPG AGSMLSAVKV EDSWPQGPLE PTSCQLSKQP HGPSAASSPR 451 500 ENSP00000255992/1-1029 G--------V PQPSWGPEAQ ---------- ---------- ---------- ENSTTRP00000002491/1-991 ---------X XXXXXXXXXX ---------- ---------- ---------- bmy_21018T0/1-1230 DNGGTAW--V RVPSWGSAAR GEAWACLLES SQVGFSAAPT RFCQPTGAGA ENSBTAP00000013482/1-1025 NVKDIAPTQV RVPSWGPAAQ ---------- ---------- ---------- 501 550 ENSP00000255992/1-1029 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002491/1-991 ---------- ---------- ---------- ---------- ---------- bmy_21018T0/1-1230 LACLLGGEAS TWPPLPRKPS IVRTVVLQRI PNCREAGPYV WLSQPCPWAW ENSBTAP00000013482/1-1025 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000255992/1-1029 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002491/1-991 ---------- ---------- ---------- ---------- ---------- bmy_21018T0/1-1230 VQLASLPQIG EQKADQSPHR RASCLAGSHA WYRTHHPCGR QARQPAGAGP ENSBTAP00000013482/1-1025 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000255992/1-1029 ------AASA SSSPLEALEA CLKGIPPNGS SPSQLPPTSC SQNPQPGDSR ENSTTRP00000002491/1-991 ------XXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_21018T0/1-1230 GAWARDAGSA SSSPLEALEA CLRGIPLSGS LPSQPPASSW SRSPQPGDPG ENSBTAP00000013482/1-1025 ------AGSA SSSPLEALEA CLRGIPLSGS LPPQPPASSW SRSPQPGDPG 651 700 ENSP00000255992/1-1029 SQKPELQPHR SHSEEATREP VLPLGLQSCV RDGPSRPLAP RGTPTSFSSS ENSTTRP00000002491/1-991 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_21018T0/1-1230 SQRPELQRLG SHSKGRLRH- ----GLGGCM RDSPALPAGS QGTSTSFSSS ENSBTAP00000013482/1-1025 SQRPELPRLG PHSKEVVIGP LPALGLQGCM RDSPALPLGS QGTPSSFSSS 701 750 ENSP00000255992/1-1029 SSTDWDLDFG SPVGNQGQHP GKGSPPGSSP LQGLENCLKE IPVPVLRPAW ENSTTRP00000002491/1-991 XXXXXXXXXX XXXXXXXXXX XXXSREGSSP LQGLENCLRE MPAPGPQPTW bmy_21018T0/1-1230 SSIDGDLDFQ SPEGSQGHRP GKGSPVGSSP LQGLENCLRD IPAPGPQPTW ENSBTAP00000013482/1-1025 SSSDGDLDFQ SPERSQGHRP GKGSPVGSSP LQGLENCLRE IPEPRLQPAW 751 800 ENSP00000255992/1-1029 PCSSAADRGP RRAEPRNWTA DKEGLRAEAC E-SRLGQGRG EAPTRSLHLV ENSTTRP00000002491/1-991 PCSSAGHRGP WRVEPKNWTA GMEGLRDEAC EPAHLGQRGG DVPTRSLRLA bmy_21018T0/1-1230 SCSSAGHRGP WRVEPKNWTA GTEGLRGEAC EPAHLGQRGG DVPTRSLRLA ENSBTAP00000013482/1-1025 PCSSAGDGGP RRAEPRNWAA GMEGLRGEAC EPAHLGQRGG DVPARSLRLA 801 850 ENSP00000255992/1-1029 SPQVFTSSCV PACHQRGFKD PGATRPGVWR WLPEGSAPKP SPLHCLESAL ENSTTRP00000002491/1-991 SPQALAPGTI PACHQQGPKD PGAARPGPWR WLPDGPATKP SPLHCLENSL bmy_21018T0/1-1230 SPQALASGTI PTCHQRGPKD PGAARPGPWT WLPDGPATKP SPLHCLENSL ENSBTAP00000013482/1-1025 SPQALASGAL PTCSPRGPRD LGAARPGQWR WLRDGPATKP SPLHCLENSL 851 900 ENSP00000255992/1-1029 RGILPVRPLR FACVG----G PSPSPSPGSS SSFSGSEGED PRPEPDLWKP ENSTTRP00000002491/1-991 KGILPGGPLR FACLADPVPG PSPSPSSSSS SS----EGED PRLEPELWQP bmy_21018T0/1-1230 KGILPGGPLR FACLADPVPG PSPSPSSSSS SSISSSEGED PRLEPELWQP ENSBTAP00000013482/1-1025 KGILPGGPLR FACLA----G LGPSPRSSSS SSISSSEGED PRPEPELWQH 901 950 ENSP00000255992/1-1029 LPQ------- ---------- ---------- --ERDRLPSC KPPVPLSPCP ENSTTRP00000002491/1-991 LLQ------- ---------- ---------- --ERDRLPSC KGLGPPSPRP bmy_21018T0/1-1230 LLQGELVGEG RGEPGAPPQG AGTALIPALF VAERDRLPSC KGLGAPSPRP ENSBTAP00000013482/1-1025 PLQ------- ---------- ---------- --ERDHLPSS KGLGTLSPQC 951 1000 ENSP00000255992/1-1029 GGTPAGSSGG SPGEDPRRTE PRYCSGLGAG -TAQDPCPVS QLEK------ ENSTTRP00000002491/1-991 GGPRAGS--- SPGEGRRRGE TGDHRGLSAG --AAVPC--S QLEK------ bmy_21018T0/1-1230 GGPRAGS--- SPGEGWRRGE TGDHRGLSA- --AVDPCPAS QLEKRSGSGP ENSBTAP00000013482/1-1025 GGPRAGC--- SPGEGSRRRE PRHRCDFSAE RSAVHPCPAG QL-------- 1001 1050 ENSP00000255992/1-1029 ---------- ---RPRVSEA SRGLELGHGR PRVAAKTHER LLPQGPPELP ENSTTRP00000002491/1-991 ---------- ---RPTAGEE SRGLGPGDGS PGVTAGTHPR ---------P bmy_21018T0/1-1230 CQPPGSACGP VSWNPTAGEE SRGLGPGDGS PGVT-GPSPA YRS------G ENSBTAP00000013482/1-1025 ---------- -SWKPTAGEE SRGLGPGDGR PGVTDSPHPA LVSAGTDGEP 1051 1100 ENSP00000255992/1-1029 SESPPPELPP PEAAPPVLPA SSLQPPCHCG KPLQQELHSL GAALAEKLDR ENSTTRP00000002491/1-991 LPGDPPGLPP EPPSL-ALPR ASPRPPCPCA SSLQHELRGL GAALSEKLDR bmy_21018T0/1-1230 FSRDPPEAPS RRSA-----R ASPRSRHPTG FA-------- --------AR ENSBTAP00000013482/1-1025 LPGGVPQPAP AAAVPGALPG TSPRPPCPCG ASLQQELHSL GAALSEKLDR 1101 1150 ENSP00000255992/1-1029 LATALAGLAQ EVATMRTQVN RLGRRPQG-P GPMGQASWMW TLPRGP-RWA ENSTTRP00000002491/1-991 LAGTLAGLAQ EVAAVRTQVD RLGRRPWG-P GTKG------ -LLWGP-RWT bmy_21018T0/1-1230 LPAATVPL-R EFPAARAPHP R--CRPLGEA GSAG------ ---RGPGRPG ENSBTAP00000013482/1-1025 LAGALAGLAQ EVAAVRTQVD RLGRRPRG-A GPKG------ -LPRGP-RLS 1151 1200 ENSP00000255992/1-1029 HGPGHRHLPY WRQKGPTRPK PKILR-GQGE SCRAGD-LQG LSRGTARRAR ENSTTRP00000002491/1-991 GGPAHRHPPY WRHKGPRRPR PKILR-GQAE GCRAGD-SSG LASGRPRLVP bmy_21018T0/1-1230 SGSGRRENP- ---------- -----GGSAE AAPAGPGAEG ---------- ENSBTAP00000013482/1-1025 SGPAHRHLPY WRHKGPPRPR PKILRGGPAE GCRAGDLSSG LSSGRLRRV- 1201 1250 ENSP00000255992/1-1029 PLPPDAPPAE -------PPG LHCSSSQQLL SSTPSCHAAP PAHPLLAHTG ENSTTRP00000002491/1-991 QLPPDVPLAE -------ASG PSSGP----L SSACGSPAVL TACHPLGLPE bmy_21018T0/1-1230 --PPRGPSLD RWPCSQTPTL LEAQGPPQAE TEDLAGPGGR LQGRRLFRPG ENSBTAP00000013482/1-1025 --PPDTPSAE -------PPG TGSSPPWQPH SSACSGPAVQ TVRHPLGHPE 1251 1300 ENSP00000255992/1-1029 GHQSPLPPLV PAALPLQGAS PPAASADADV PTSGVAPDGI PERPKEPSSL ENSTTRP00000002491/1-991 SPWSPPPPLL PAAPPLQVAA -SAG---AEP RAAAAAPPRT LKWPKDPSSL bmy_21018T0/1-1230 QREAPP---- --------GA -SAAPGHAPG RGFWAQP--- --WSF-PAAS ENSBTAP00000013482/1-1025 ARQSPPPLSL PAAPPPQVAA -PVGTAEAEP RGVVAAPARI PRWPKDPGGV 1301 1350 ENSP00000255992/1-1029 LGGVQ----- ------RALQ EELWG----- -GEHRDPRWG AH- ENSTTRP00000002491/1-991 LAGLQ----- ------RALE GELWG----- -GEHRDPGWG PPS bmy_21018T0/1-1230 LLGMRQPRCA DRVTKDKTLE QQTWAHIGVR SGPTCTDSIG LE- ENSBTAP00000013482/1-1025 LVGLQ----- ------RALE GEQWV----- -GELRDPAWG PP-