KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:39 2014 Check: 00 .. Name: ENSP00000367527/1-692 Len: 715 Check: 3267 Weight: 1.00 Name: ENSBTAP00000013484/1-710 Len: 715 Check: 2263 Weight: 1.00 Name: ENSTTRP00000004151/1-689 Len: 715 Check: 5114 Weight: 1.00 Name: bmy_16413T0/1-438 Len: 715 Check: 2004 Weight: 1.00 Name: BACU017223/1-690 Len: 715 Check: 9421 Weight: 1.00 // 1 50 ENSP00000367527/1-692 MSSFEGQMAE YPTISIDRFD RENLRARAYF LSHCHKDHMK GLRAPTLKRR ENSBTAP00000013484/1-710 MSCFEGQMAE YPTISIDRFD RENLRARAYF LSHCHKDHMK GLRAPSLKRR ENSTTRP00000004151/1-689 MSCFEGQMAE YPTISIDRFD RENLRARAYF LSHCHKDHMK GLRAPTLKRR bmy_16413T0/1-438 MSCFEGQMAE YPTISIDRFD RENLRARAYF LSHCHK---- ---------- BACU017223/1-690 MSCFEGQMVE YPTISIDRFD RENLRARAYF LSHCHKDHMK GLRAPTLKRR 51 100 ENSP00000367527/1-692 LECSLKVYLY CSPVTKELLL TSPKYRFWKK RIISIEIETP TQISLVDEAS ENSBTAP00000013484/1-710 LECSLKVCLY CSPVTKELLL TSPKYRFWEK RIVSIEIETP TQISLVDEAS ENSTTRP00000004151/1-689 LECSLKVYLY CSPVTKELLL TSPRYRFWEK RIISIEIETP TQISLVDEAS bmy_16413T0/1-438 ---------- ---------- ---------- ---------- ---------- BACU017223/1-690 LECSLKVYLY CSPVTKELLL TSPRYRFWEK RIISIEIETP TQISLVDEAS 101 150 ENSP00000367527/1-692 GEKEEIVVTL LPAGHCPGSV MFLFQGNNGT VLYTGDFRLA QGEAARMELL ENSBTAP00000013484/1-710 GEKEEIVVTL LPAGHCPGSV MFLFQGNNGT VLYTGDFRLA KGEAARMELL ENSTTRP00000004151/1-689 GEKEEIVVTL LPAGHCPGSV MFLFQGNNGT VLYTGDFRLA KGEAARMELL bmy_16413T0/1-438 ---------- ---------- ---------- ---------- ---------- BACU017223/1-690 GE-------- ---------- -----GNNGT VLYTGDFRLA KGEAARVEPL 151 200 ENSP00000367527/1-692 HSGGRVKDIQ SVYLDTTFCD PRFYQIPSRE ECLSGVLELV RSWITRSPYH ENSBTAP00000013484/1-710 HSGGRVKDIQ SVYLDTTFCN PKYYQIPSRE ECLRGIMELV RSWISRSPYH ENSTTRP00000004151/1-689 HSGGXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16413T0/1-438 ---------- ---------- ---------- ---------- ---------- BACU017223/1-690 HSGGRVKDIQ SVYLDTTFCH PKYYQIPSRE ECLRGILELV RSWITRSPYH 201 250 ENSP00000367527/1-692 VVWLNCKAAY GYEYLFTNLS EELGVQVHVN KLDMFRNMPE ILHHLTTDRN ENSBTAP00000013484/1-710 VVWLNCKAAY GYEYLFTNLS EEFGLQVHVD KLDMFRNMPD ILHHLTTDRD ENSTTRP00000004151/1-689 XXXXXXXXXX XXXXXXXXXX XXXXXXVHVN KLDMFRNMPD ILHHLTTDRD bmy_16413T0/1-438 ---------- ---------- ---------- ---------- ---------- BACU017223/1-690 VVWLSCKAAY GYEYLFTNLS EEFGVQVHVD KLDMFRNMPD ILHHLTTDRD 251 300 ENSP00000367527/1-692 TQIHACRHPK AEEYFQWSKL PCGITSRNRI PLHIISIKPS TMWFGERSRK ENSBTAP00000013484/1-710 TQIHACRHPK AEEYFQWSKL PCGITSKNRI PLHTISIKPS TMWFGERTRK ENSTTRP00000004151/1-689 TQIHACRHPK AEEYFQWNKL PCGVTSKNRI PLHTISIKPS TMWFGERARK bmy_16413T0/1-438 ---------- -EEYFQWNKL PCGITSKNRI PLHTISIKPS TMWFGERARK BACU017223/1-690 TQIHACRHPK AEEYFQWNKL PCGITSKNRI PLHTISIKPS TMWFGERARK 301 350 ENSP00000367527/1-692 TNVIVRTGES SYRACFSFHS SYSEIKDFLS YLCPVNAYPN VIPVGTTMDK ENSBTAP00000013484/1-710 TNIIMRTGES SYRACFSFHS SYSEIKDFLS YICPVNVYPN VIPLGTTMDK ENSTTRP00000004151/1-689 TNVIVRTGAS SYRACFSFHS SYSEIKDFLS YIYPVNVYPN VIPLGTTMGK bmy_16413T0/1-438 TNVIVS---- ---------- ---------- ---------- ---------- BACU017223/1-690 TNVIVRTGER SYRACFSFHS SYSEIKDFLS YIYPVNVYPN VIPLGTTMGK 351 400 ENSP00000367527/1-692 VVEILKPLCR SSQSTEPKYK PLGKLKRART VHRDSEEEDD Y-LFDDPLPI ENSBTAP00000013484/1-710 VKEILKPLCR SSQSTEPKYK PLGKLKRART MHLDSEEEDD DGLFDDLLPA ENSTTRP00000004151/1-689 VQEILKPLCR SSQSTEPKYK PLGKLKRART IHLDSEEDDD SDLFDDPLPV bmy_16413T0/1-438 ----LKPLCR SSQSTEPKYK PLGKLKRART IHLDSEDDDD SDLFDDPLPV BACU017223/1-690 VQEILKPLCR SSQSTEPKYK PLGKLKRART IHLDSEDDDD SDLFDDPLPV 401 450 ENSP00000367527/1-692 PLRHKVPYPE TFHPEVFSMT AVSEKQPEKL RQTPGCCRAE CMQ-SSRFTN ENSBTAP00000013484/1-710 PLRHKVPNQL TLHPEVFPTP AISQNQPEKR RESTGCFKAE SMP-TFLWAN ENSTTRP00000004151/1-689 PLRHKIPNQQ TLHPEVFPTT AISQNQPEKQ RESTGCFRAE SMP-TFLWAD bmy_16413T0/1-438 PLRHKIPNQQ TLRPEVLPTT AISQDQPEKR RESTGCFRAE SMPTTFLWAD BACU017223/1-690 PLRHKIPSQQ TLRPEVLPTT AISQDQPQKR RESTGCFSAE SMPTTFLWAD 451 500 ENSP00000367527/1-692 FVDCEESNSE SEEEVGIPAS LQGDLGSVLH LQ-KADGDVP QWEVFFKRND ENSBTAP00000013484/1-710 FIDCEESNSE SEES-EILGS AQGDTGPVFQ PQQRADGEVP QWEVFFKRDA ENSTTRP00000004151/1-689 FIDCEESNSE SEES-EIPAS AQGDMGPVPQ LQKKADGEVP QWEVFFKRSA bmy_16413T0/1-438 FIDCEESNSE SEES-EIPAS AQGDTGPVPQ LQKRADGEVP QWEVFFKRSA BACU017223/1-690 FIDCEESNSE SEES-EIPAS AQGDTGPVPQ LQKRADGEVP QWEVFFKRSA 501 550 ENSP00000367527/1-692 EITDESLENF PSSTVAGGSQ SPKLFSD-SD GESTHISSQN SSQSTHITEQ ENSBTAP00000013484/1-710 EGTDDCLENL PSSTEVGGSQ SPKLFSD-SD GESTHISSQA SSQSTHISEQ ENSTTRP00000004151/1-689 DLTDDCLENL PSSTEAGGSQ SPKLFSDSSD GDSTHISSQT SSQSTHISEQ bmy_16413T0/1-438 DLTDDCLENL PSSTEAGGSQ SPKLFSDSSD GESTHISSQT SSQSTHISEQ BACU017223/1-690 DLTDDCLENL PSSTEAGGSQ SPKLFSDSSD GESTHISSQT SSQSTHISEQ 551 600 ENSP00000367527/1-692 GSQGWDSQSD TVLLSSQERN SGDITSLDKA DYRPTIKENI PASLMEQNVI ENSBTAP00000013484/1-710 GSQGWDSQSD TVLLSSQDRN SGDVTSLNKG VYRPGIKENI PAPQPEQNVL ENSTTRP00000004151/1-689 GSQGWDSQSD TVLLSSQERN GG-MTSSSRR VYRPGINDNT LAPQIEQNVL bmy_16413T0/1-438 GSQGWDSQSD TVLLSSQERN GG-MASSSRR XYRPGIKDNT LAPQTEQXVL BACU017223/1-690 GSQGWDSQSD TVLLSSQERN GG-MASSSRR VYRPGIKDNT LAPQMEQNVL 601 650 ENSP00000367527/1-692 CPKDTYSDLK SRDKDVTIVP STGEPTTLSS ETHIPEEKSL LNLSTNADSQ ENSBTAP00000013484/1-710 CLKDTCSDFK SRDQDVNILP SAGETTTLSS GKQMLQEKRP LTLSSSADSQ ENSTTRP00000004151/1-689 CPKDTYSDLK SRDQDVSIAS SVGETTTLSS GKHMPQEKRP LNLSSSADSQ bmy_16413T0/1-438 CPKDTHSDVK TRDQDVSTGS SAGXTXTLSS XKHTPQEKRP LNPSSSADSQ BACU017223/1-690 CPKDTYSDLN IRDQDVSIGS SAGETATLSS GKHTPQEKRP LNPSSSAESP 651 700 ENSP00000367527/1-692 SSSDFEVPST PEAELPKREH LQYLYEKLAT GESIAVKKRK CSLLDT---- ENSBTAP00000013484/1-710 SSSDFEIPCT PEAELPKQEH LQYLYEKLAT GESIVVEKRK GLLHSKATTK ENSTTRP00000004151/1-689 SSSDFEIPAT PEAELPTREH LQHFYEKLAT GERIVVEKRK RS-------- bmy_16413T0/1-438 SSSDFEIPST PEAELPTREH LQYFYEKLAT GERIVVEKRK SSLHSRATTK BACU017223/1-690 SSSDFEIPST PEAELPTREH LQYFYEKLAT GERIVVEKRK SSLHSRATTK 701 750 ENSP00000367527/1-692 ---------- ----- ENSBTAP00000013484/1-710 KSILSDTSQN HNR-- ENSTTRP00000004151/1-689 ---------- ----- bmy_16413T0/1-438 KPIPRDNSQN PNR-- BACU017223/1-690 KPIPRDNSQN PDKLK