KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:41 2014 Check: 00 .. Name: bmy_15799T0/1-374 Len: 542 Check: 4367 Weight: 1.00 Name: ENSP00000410732/1-515 Len: 542 Check: 1059 Weight: 1.00 Name: ENSBTAP00000013543/1-475 Len: 542 Check: 9366 Weight: 1.00 Name: BACU018502/1-475 Len: 542 Check: 9715 Weight: 1.00 Name: ENSTTRP00000001502/1-475 Len: 542 Check: 9742 Weight: 1.00 // 1 50 bmy_15799T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSP00000410732/1-515 MSSPNIWSTG SSVYSTPVFS QKMTVWILLL LSLYPGFTSQ KSDDDYEDYA ENSBTAP00000013543/1-475 MSLTNIWSTG SSVYSTPVFS QKMTLWILLL LSLYPGLTRQ KSDDDYEDYA BACU018502/1-475 MSSTNIWSTG SSVYSTPVFS QKMTVWILLL LSLYPGLTSQ KSDDDYEDYA ENSTTRP00000001502/1-475 MSSTNTWSTG SSVYSTPVFS QKMTVWILLL LSLYPGLTSQ KSDDDYEDYA 51 100 bmy_15799T0/1-374 MQVNW----- ---------- ---------- RRASITSR-- ---------- ENSP00000410732/1-515 SNKTWVLTPK VPEGDVTVIL NNLLEGYDNK LRPDIGVKPT LIHTDMYVNS ENSBTAP00000013543/1-475 SNKTWVLTPK VPEGDVTVIL NNLLEGYDNK LRPDIGVKPT LIHTDMYVNS BACU018502/1-475 SNKTWVLTPK VPEGDVTVIL NNLLEGYDNK LRPDIGVKPT LIHTDMYVNS ENSTTRP00000001502/1-475 SNKTWVLTPK VPEGDVTVIL NNLLEGYDNK LRPDIGVKPT LIHTDMYVNS 101 150 bmy_15799T0/1-374 ---------E YTIDIIFAQT WFDSRLKFNS TMKVLMLNSN MVGKIWIPDT ENSP00000410732/1-515 IGPVNAINME YTIDIFFAQT WYDRRLKFNS TIKVLRLNSN MVGKIWIPDT ENSBTAP00000013543/1-475 IGPVNAINME YTIDIFFAQT WYDRRLKFNS TIKVLRLNSN MVGKIWIPDT BACU018502/1-475 IGPVNAINME YTIDIFFAQT WYDRRLKFNS TIKVLRLNSN MVGKIWIPDT ENSTTRP00000001502/1-475 IGPVNAINME YTIDIFFAQT WYDRRLKFNS TIKVLRLNSN MVGKIWIPDT 151 200 bmy_15799T0/1-374 FFRNSRKSDA HWITTPNRLL RIWNDGRVLY TLRLTINAEC YLQLHNFPMD ENSP00000410732/1-515 FFRNSKKADA HWITTPNRML RIWNDGRVLY TLRLTIDAEC QLQLHNFPMD ENSBTAP00000013543/1-475 FFRNSKKADA HWITTPNRML RIWNDGRVLY TLRLTIDAEC QLQLHNFPMD BACU018502/1-475 FFRNSKKADA HWITTPNRML RIWNDGRVLY TLRLTIDAEC QLQLHNFPMD ENSTTRP00000001502/1-475 FFRNSKKADA HWITTPNRML RIWNDGRVLY TLRLTIDAEC QLQLHNFPMD 201 250 bmy_15799T0/1-374 EHSCPLEFSN ---------- ---------- ---------- ---------- ENSP00000410732/1-515 EHSCPLEFSS WSRSIAQAGM CSGVISAHYS LRFWGSTDPP TLASRVAGIS ENSBTAP00000013543/1-475 EHSCPLEFSS Y--------- ---------- ---------- ---------- BACU018502/1-475 EHSCPLEFSS Y--------- ---------- ---------- ---------- ENSTTRP00000001502/1-475 EHSCPLEFSS Y--------- ---------- ---------- ---------- 251 300 bmy_15799T0/1-374 -GYPKNEIEY KWKKPSVEVA DPKYWRLYQF AFVGLRNTTE VSHTISGDYI ENSP00000410732/1-515 DGYPREEIVY QWKRSSVEVG DTRSWRLYQF SFVGLRNTTE VVKTTSGDYV ENSBTAP00000013543/1-475 -GYPREEIVY QWKRSSVEVG DTRSWRLYQF SFVGLRNTTE VVKTTSGDYV BACU018502/1-475 -GYPREEIVY QWKRSSVEVG DTRSWRLYQF SFVGLRNTTE VVKTTSGDYV ENSTTRP00000001502/1-475 -GYPREEIVY QWKRSSVEVG DTRSWRLYQF SFVGLRNTTE VVKTTSGDYV 301 350 bmy_15799T0/1-374 IMTIFFDLSR RMGYFTIQTY IPCILTVVLS WVSFWINKDA VPARTSLGIT ENSP00000410732/1-515 VMSVYFDLSR RMGYFTIQTY IPCTLIVVLS WVSFWINKDA VPARTSLGIT ENSBTAP00000013543/1-475 VMTVYFDLSR RMGYFTIQTY IPCTLIVVLS WVSFWINKDA VPARTSLGIT BACU018502/1-475 VMTVYFELSR RMGYFTIQTY IPCTLIVVLS WVSFWINKDA VPARTSLGIT ENSTTRP00000001502/1-475 VMTVYFDLSR RMGYFTIQTY IPCTLIVVLS WVSFWINKDA VPARTSLGIT 351 400 bmy_15799T0/1-374 TVLTMTTLT- ---------- ---------- ---------L MEYGTLHYFT ENSP00000410732/1-515 TVLTMTTLST IARKSLPKVS YVTAMDLFVS VCFIFVFSAL VEYGTLHYFV ENSBTAP00000013543/1-475 TVLTMTTLST IARKSLPKVS YVTAMDLFVS VCFIFVFSAL VEYGTLHYFV BACU018502/1-475 TVLTMTTLST IARKSLPKVS YVTAMDLFVS VCFIFVFSAL VEYGTLHYFV ENSTTRP00000001502/1-475 TVLTMTTLST IARKSLPKVS YVTAMDLFVS VCFIFVFSAL VEYGTLHYFV 401 450 bmy_15799T0/1-374 SNKKVKTTRE RKLKNKASPG GSNASLDPEI LQHLAFIPVL IMSSGLHPGS ENSP00000410732/1-515 SNRKPSKDKD KKKKNP---- ---------L LRMFSFKAPT I---DIRPRS ENSBTAP00000013543/1-475 SNRKPSKDKD KKKKNP---- ---------L LRMFSFKAPT I---DIRPRS BACU018502/1-475 SNRKPSKDKD KKKKNP---- ---------L LRMFSFKAPT I---DIRPRS ENSTTRP00000001502/1-475 SNRKPSKDKD KKKKNP---- ---------L LRMFSFKAPT I---DIRPRS 451 500 bmy_15799T0/1-374 TLIPMNSLS- LPQGEDDYGY QCLEGKDCAS FFCCFEDCRT GSWREGRIHI ENSP00000410732/1-515 ATIQMNNATH LQERDEEYGY ECLDGKDCAS FFCCFEDCRT GAWRHGRIHI ENSBTAP00000013543/1-475 ATIQMNNATH LQERDEEYGY ECLDGKDCAS FFCCFEDCRT GAWRHGRIHI BACU018502/1-475 ATIQMNNATH LQERDEEYGY ECLDGKDCAS FFCCFEDCRT GAWRHGRIHI ENSTTRP00000001502/1-475 ATIQMNNATH LQERDEEYGY ECLDGKDCAS FFCCFEDCRT GAWRHGRIHI 501 550 bmy_15799T0/1-374 RVAKIDSYSR IFFPTAFALF NLVYWKRPFY LIFDPVHFLM KH ENSP00000410732/1-515 RIAKMDSYAR IFFPTAFCLF NLVYWVSYLY L--------- -- ENSBTAP00000013543/1-475 RIAKMDSYAR IFFPTAFCLF NLVYWVSYLY L--------- -- BACU018502/1-475 RIAKMDSYAR IFFPTAFCLF NLVYWVSYLY L--------- -- ENSTTRP00000001502/1-475 RIAKMDSYAR IFFPTAFCLF NLVYWVSYLY L--------- --