KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:42 2014 Check: 00 .. Name: ENSP00000440704/1-562 Len: 842 Check: 1920 Weight: 1.00 Name: ENSBTAP00000013544/1-594 Len: 842 Check: 9895 Weight: 1.00 Name: ENSTTRP00000014653/1-617 Len: 842 Check: 3226 Weight: 1.00 Name: bmy_01999T0/1-521 Len: 842 Check: 8647 Weight: 1.00 Name: BACU003242/1-786 Len: 842 Check: 2335 Weight: 1.00 // 1 50 ENSP00000440704/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013544/1-594 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014653/1-617 ---------- ---------- ---------- ---------- ---------- bmy_01999T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU003242/1-786 MAEAEGSSPL LLPPPLPPPP GMAEVEAPTA AGTDKKQFSC AGGGVMDVER 51 100 ENSP00000440704/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013544/1-594 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014653/1-617 ---------- ---------- ---------- ---------- ---------- bmy_01999T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU003242/1-786 SRFPYCVVWT PIPVLTWFFP IIGHMGICTS TGVIRDFAGP YFVSEDNMAF 101 150 ENSP00000440704/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013544/1-594 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014653/1-617 ---------- ---------- ---------- ---------- ---------- bmy_01999T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU003242/1-786 GKPAKYWKLD PAQVYASGPN AWDTAVHDAS EEYKHRMHSL CCDNCHSHVA 151 200 ENSP00000440704/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013544/1-594 ---------- ---------- ---------- --------GA RPDLTLGLPP ENSTTRP00000014653/1-617 ---------- ---------- ---------- ---------- ---------- bmy_01999T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU003242/1-786 LALNLMRYNN STNWNMVTLC FFCLLYGKYV SCQGSQSYPT KVSPPYWTPT 201 250 ENSP00000440704/1-562 ---------- ---MPQRGHP SQEGLWALPS LPMAHGPKPE TEGLLDLSFL ENSBTAP00000013544/1-594 GSHVCPAWAL ARLMPQRGHP APEGPWSLPG LLMAREPEPE ADGLLDLSFL ENSTTRP00000014653/1-617 ---------- ---MPQRGHP SQKGLWSLPG LLMAHEPQPE ADGLLDLSFL bmy_01999T0/1-521 ---------- ---MPQRGHP SQKGFWSLPG LLMAHEPQPE ADGLLDLSFL BACU003242/1-786 GSHVCPAWAL PQLMPQRGHP SQKGLLSLPG LLMAHEPQPE ADGLLDLSFL 251 300 ENSP00000440704/1-562 TEEEQEAIAG VLQRDARLRQ LEEGRVSKLR ASVADPGQLK ILTGDWFQEA ENSBTAP00000013544/1-594 TEEEQEAIAE VLKRDAHLRQ LEEGRISKLR ASLADPGQLK ILTGDWFQEA ENSTTRP00000014653/1-617 TEEEQEAIAK VLKRDARLRQ LEERRVSKLR TSLADPGQLK ILTGDWFQEA bmy_01999T0/1-521 TEEEQEAIAK VLKRDAHLRQ LEEGRV---- ---------- ---------- BACU003242/1-786 TEEEQEAIAK VLKRDAHLRQ LEEGRVSKLR TSLADPGQLK ILTGDWFQEA 301 350 ENSP00000440704/1-562 RSQRHHNAHF GSDLVRASMR RKKSTRGDQA PGHDREAEAA VKEKEEGPEP ENSBTAP00000013544/1-594 RSQRHHHAHF GSDLVRASIR RKKGCRRDQA GGSDVEAEAA GKETEEALEP ENSTTRP00000014653/1-617 RFQRHHHTHL GSDLVRASIR RKKGSRGDQA QGSDGEAQAA GKETEEALEP bmy_01999T0/1-521 ---------- ---------- RKKGSRGDQA QGSDAEAEAA GKETEEALEP BACU003242/1-786 RFQRHHHAHL GSDLVRASIR RKKGSRGDQA QGSDAEAEAA GKETEEALEP 351 400 ENSP00000440704/1-562 RLTIDEAPQE RLRETEGPDF PSPSVPLKAS DPEEASQAQE D----PGQGD ENSBTAP00000013544/1-594 RLSVDEGPQE RFIEAEGPDV PSPRVSTKPS EQEEEPQAEE DEREAPDLEH ENSTTRP00000014653/1-617 RLPMDEAPQE RFSEAEGPDF PSPYVPPKAS DHEEEPQAQE A----PGPGG bmy_01999T0/1-521 RLPMDEDPQE RFSEAEGPDF PSPYVPPKAS DHEEEPQAQE A----PGPGG BACU003242/1-786 RLPMDEAPQE RFSEAEGPDF PSPYVPPKSS DHEEEPQAQE A----PGPGG 401 450 ENSP00000440704/1-562 QQV-CAEEAD PELEPASGGE QEPRPQQAQ- ---------- --TKAASQIL ENSBTAP00000013544/1-594 PLVVAGEEAD PEMQPPSMGE EEPQTPPAQ- ---------- --TQAASEML ENSTTRP00000014653/1-617 VQAFAAEEAD PELEPPSRGE EEPQPLPAQV GGSGPRLLSR PGADSGRVHL bmy_01999T0/1-521 VQVFAAEEAD PDLEPPSRGE EEPQPPPAQ- ---------- --TQEASEIL BACU003242/1-786 VQVFAAEEAD PELEPPSRGE EEPQPPPAQ- ---------- --TQEASEIL 451 500 ENSP00000440704/1-562 ENGEEAPGP- ---------- --DPSLDRML SSSSSVSSLN S--------- ENSBTAP00000013544/1-594 ENGEENPGP- ---------- --DSSFDRML SSSSSMSSLN S--------- ENSTTRP00000014653/1-617 REAASGPGPR AVAGGAGGGT PLHLPPPQTL EASEIXXXXX XXXXXXXXXX bmy_01999T0/1-521 ENGEEAPGP- ---------- --DLSLDRVL SSSSSMSSLN S--------- BACU003242/1-786 ENGEEAPGP- ---------- --DLSLDRVL SSSSSMSSLN S--------- 501 550 ENSP00000440704/1-562 ---------- ---STLSGSQ MSLSGDAE-- AVQVRGSVHF ALHYEPGAAE ENSBTAP00000013544/1-594 ---------- ---STLSGSQ MSLSGEPEAG AVQVRGSVHF ALRYEPGAAE ENSTTRP00000014653/1-617 XXXXXXXXXX XPISSLSSSQ TSLSGEAEAG AVQVRGSLYF ALRYEPGAAQ bmy_01999T0/1-521 ---------- ---STLSSSQ MSLSGEAEAG AVQVRGSLHF ALRYEPDAAE BACU003242/1-786 ---------- ---STLSSSQ MSLSGEAEAG AVQVRGSLHF ALHYEPGAAE 551 600 ENSP00000440704/1-562 LRVHVIQCQG LAAARRRRSD PYVKSYLLPD KQSKRKTAVK KRNLNPVFNE ENSBTAP00000013544/1-594 LRVHVIQCQG LAAARRRRSD PYVKSYLLPD KQSKRKTTVK KRNLNPVFNE ENSTTRP00000014653/1-617 LRVHVIQCQG LAAARRRRSD PYVKSKLLPD KQSKRKTSVK KRNLNPVFNE bmy_01999T0/1-521 LRVHVIQCQG LAAARRRRSD PYVKSKLLPD KQSKRKTSVK KRNLNPVFNE BACU003242/1-786 LRVHVIQCQG LAAARRRRSD PYVKSKLLPD KQSKRKTSVK KRNLNPVFNE 601 650 ENSP00000440704/1-562 TLRYSVPQAE LQGRVLSLSV WHRESLGRNI FLGEVEVPLD TWDWGSEPTW ENSBTAP00000013544/1-594 ILRYSVPQTE LRGRVLSLSV WHRESLGRNI FLGEVEVPLD TWDWDSEPTW ENSTTRP00000014653/1-617 TLWYSIPQAE LRGRVLSLSV WHRESLGRNI FLGEVEVPLD TWDWDSEPTW bmy_01999T0/1-521 TLWYSVPQAE LRGRVLSLSV WHRESLGRNI FLGEVEVPLD TWDWDSEPTW BACU003242/1-786 TLWYSVPQAE LRGRVLSLSV WHRESLGRNI FLGEVEVPLD TWDWDSEPTW 651 700 ENSP00000440704/1-562 LPLQPRVPPS PDDLPSRGLL ALSLKYVPAG SEGA------ --GLPPSGEL ENSBTAP00000013544/1-594 LPLQPRVPPS PDDLPSRGLL SLSLKYLPAG SEGP------ --GLPPSGEL ENSTTRP00000014653/1-617 LPLQPRVPPS PDDLPSRGLL SLSLKYVPAG SEGT------ --GLPPSGEL bmy_01999T0/1-521 LPLQPRVPPS PNDLPSRGLL SLSLKYVPAG SEGA------ --GLPPSGEL BACU003242/1-786 LPLQPRVPPS PDDLPSRGLL SLSLKYVPAG SEGPELSLFA GAGLPPSGEL 701 750 ENSP00000440704/1-562 HFWVKEARDL LPLRAGSLDT YVQCFVLPDD SQASRQRTRV VRRSLSPVFN ENSBTAP00000013544/1-594 HFWVKEVQDL IPLRSGSPDT FVQCSVLPDD SRASRQRTRV VRRSLNPMFN ENSTTRP00000014653/1-617 HFWVKEAQDL VPLRPGSLDT YIQCLVLPDD SQASRQRTRV VRRSLSPTFN bmy_01999T0/1-521 HFWVKEARDL VPLRPGSLDT YIQCLVLPDD SRASRQRTRV VRRSLSPMFN BACU003242/1-786 HFWVKEAQDL VPLRPGSLDT YIQCLVLPDD SRASRQRTRV VRRSLSPMFN 751 800 ENSP00000440704/1-562 HTMVYDGFGP ADLRQACAEL SLWDHGALAN RQLGGTRLSL GTGSSYGLQV ENSBTAP00000013544/1-594 HTMVYDGFGP TDLRQACAEL SLWDHGALGS RQLGGTRLSL GTGSSYGLQV ENSTTRP00000014653/1-617 HTMVYDGFGP ADLRQACAEL SLWDHGPLAS RQLGGTRLSL GTGSSYGLQV bmy_01999T0/1-521 HTMVYDGFGP ADLRQACAEL SLWDHGPLAS RQLGGTRLSL GTGSSYGLQV BACU003242/1-786 HTMVYDGFGP TDLLQACAEL SLWDHGPLAS RQLGGTRLSL GTGSSYGLQV 801 850 ENSP00000440704/1-562 PWMDSTPEEK QLWQALLEQP CEWVDGLLPL RTNLAPRT-- -- ENSBTAP00000013544/1-594 PWMDSTREER QLWQTLLERP CEWVDGLLPL RTNLAPRT-- -- ENSTTRP00000014653/1-617 PWMDSTPEER QLWQTLLERP CEWVHGLLPL RTNLAPRTLP YK bmy_01999T0/1-521 PWMDSTPEER QLWQTLLERP CVWVDGLLPL RTNLAPRT-- -- BACU003242/1-786 PWMDSTPEER QLWQTLLERP CVWVDGLLPL RTNLAPRT-- --