KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:42 2014 Check: 00 .. Name: ENSP00000419591/1-1288 Len: 1321 Check: 4423 Weight: 1.00 Name: ENSBTAP00000013549/1-1302 Len: 1321 Check: 7890 Weight: 1.00 Name: ENSTTRP00000014682/1-1271 Len: 1321 Check: 1845 Weight: 1.00 Name: bmy_01998T0/1-1168 Len: 1321 Check: 2473 Weight: 1.00 Name: BACU003243/1-1221 Len: 1321 Check: 3252 Weight: 1.00 // 1 50 ENSP00000419591/1-1288 MAGPCPRSGA -ERAGSCWQD PLAV------ ---------A LSRGRQLAAP ENSBTAP00000013549/1-1302 MAGPSPRSGA LERAGSCWQD PLAE------ ---------A LSRGRPLAAS ENSTTRP00000014682/1-1271 ---------- --HAGSCWQD PLAE------ ---------A LSRGRPLAAS bmy_01998T0/1-1168 MAGQCLRSGA AERAGSCWQD PLAE------ ---------A LSRGRPLAAS BACU003243/1-1221 MAGQCLRSEA AERAGSCWQD PLAEXXXXXX XXXXXXXXXX XXXXXXLAAS 51 100 ENSP00000419591/1-1288 PGRGCARSRP LSVVYVLTRE PQPGLEPREG TEAEPLPLRC LREACAQVPR ENSBTAP00000013549/1-1302 PGRGCARSRP LSVVYVLTRE PLPEVEPETG AEAEPLPLRC LREACAQLPG ENSTTRP00000014682/1-1271 PGRGCARSRP LSVVYVLTRE PQPLAEPETG AEAEPLPLRC LREACAQLPG bmy_01998T0/1-1168 PGRGCARSRP LSVVYVLTRE PQPLADPETG AEAEPLPLRC LREACAQLPG BACU003243/1-1221 PGRGCARSRP LSVVYVLTRE PQPLADPETG AEAEPLPLRC LREACAQLPG 101 150 ENSP00000419591/1-1288 PRPPPQLRSL PFGTLELGDT AALDAFYNAD VVVLEVSSSL VQPSLFYHLG ENSBTAP00000013549/1-1302 PRPRPQLHSL PFGTLALGDT AALDSFYNAD VVVLEVSSSL AQPSLFYHLG ENSTTRP00000014682/1-1271 PRPRPQLRSL PFGTLALGDT SALDSFYNAD VVVLEVSSSL AQPSLFYHLG bmy_01998T0/1-1168 PRPRPQLRSL PFGTLALGDT SALDSFYNAD VVVLEVSSSL AQPSLFYHLG BACU003243/1-1221 PRPRPQLRSL PFGTLALGET SALDSFYNAD VVVLEVSSSL AQPSLFYHLG 151 200 ENSP00000419591/1-1288 VRESFSMTNN VLLCSQADLP DLQALREDVF QKNSDCVGSY TLIPYVVTAT ENSBTAP00000013549/1-1302 VRESFSMTNN VLLCSQADLP DLQALREDIF QKNSDCIGSY TLIPYVVTAT ENSTTRP00000014682/1-1271 VRESFSMTNN VLLCSQADLP DLQALREDIF QKNSDCVGSY TLIPYVVTAT bmy_01998T0/1-1168 VRESFSMTNN VLLCSQADLP DLQALR---- ----DSVGSY TLIPYVVTAT BACU003243/1-1221 VRESFSMTNN VLLCSQADLP DLQALREDIF QKNSDSVGSY TLIPYVVTAT 201 250 ENSP00000419591/1-1288 GRVLCGDAGL LRGLADGLVQ AGVGTEALLT PLVGRLARLL EATPTDSCGY ENSBTAP00000013549/1-1302 GRVLCGDAGL LRGLADGLLQ AGVGTEALLT PLVGRLAHLL EATPTDSCGY ENSTTRP00000014682/1-1271 GRVLCGDVGL LRGLADGLVQ AGVGTEVLLT PLVGRLARLL ETTPTDSCGY bmy_01998T0/1-1168 GRVLCGDAGL LRGLADGLVQ AGVGTEVLLT PLVGRLARLL EATPTDSCGY BACU003243/1-1221 GRVLCGDAGL LRGLADGLVQ AGVGTEVLLT PLVGRLARLL EATPTDSC-- 251 300 ENSP00000419591/1-1288 FRETIRRDIR QARERFSGPQ LRQELARLQR RLDSVELLSP DIIMNLLLSY ENSBTAP00000013549/1-1302 FRETIRQDIR RARERFSGLQ LRQELARLQR RLDSVELLSP DIIMNLLLSY ENSTTRP00000014682/1-1271 FRETIRRDIR QARERFSGQQ LRQELARLQR RLDSVELLSP DIIINLLLSY bmy_01998T0/1-1168 FRETIRRDIR QARERFSGQQ LRQELARLQR RLDS------ ---------- BACU003243/1-1221 ---------- -------GQQ LRQQLARLQR RLDSIELLSP DIIMNLLLSY 301 350 ENSP00000419591/1-1288 RDVQDYSAII ELVETLQALP TCDVAEQHNV CFHYTFALNR RNRPGDRAKA ENSBTAP00000013549/1-1302 RDVQDYSAII DLVETLQALP TCDVAEQHNV CFHYTFALNR RNRPGDREKA ENSTTRP00000014682/1-1271 RDVQDYSAII ELVETLQALP TCDAAEQHSV CFHYTFALNR RNRPGDREKA bmy_01998T0/1-1168 ----DYSAII DLVETLQALP TCDVAEQHNV CFHYTFALNR RNRPGDREKA BACU003243/1-1221 RDVQDYSAII ELVETLQALP TCDVAEQHNV CFHYTFALNR RNRPGDREKA 351 400 ENSP00000419591/1-1288 LSVLLPLVQL EGSVAPDLYC MCGRIYKDMF FSSGFQDAGH REQAYHWYRK ENSBTAP00000013549/1-1302 LAVLLPLVQV EGPVAPDLYC MCGRIYKDMF FSSRFQDAGH REQAYHWYRK ENSTTRP00000014682/1-1271 LAVLLPLVQF EGSVAPDLYC MCGRIYKDMF FSSGFQDAGH REQAYHWYRK bmy_01998T0/1-1168 LAVLLPLVQF EGSVAPDLYC MCGRIYKDMF FSSDFQDAGH REQAYHWYRK BACU003243/1-1221 LAVLLPLVQF EGSVAPDLYC MCGRIYKDMF FSSDFQDAGH REQAYHWYRK 401 450 ENSP00000419591/1-1288 AFDVEPSLHS GINAAVLLIA AGQHFEDSKE LRLIGMKLGC LLARKGCVEK ENSBTAP00000013549/1-1302 AFDIEPSLHS GINAAVLLIA DGQRFEDSEE LRLIGMKLGC LLARKGCVEK ENSTTRP00000014682/1-1271 AFDVEPSLHS GINAAVLLIA AGQRFEDSKE LRLIGMKLGC LLARKGCVEK bmy_01998T0/1-1168 AFDVEPSLHS GINAAVLLIA AGQRFEDSKE LRLIGMKLGC LLARKGCVEK BACU003243/1-1221 AFDVEPSLHS GINAAVLLIA AGQRFEDSKE LRLIGMKLGC LLARKGCVEK 451 500 ENSP00000419591/1-1288 MQYYWDVGFY LGAQILANDP TQVVLAAEQL YKLNAPIWYL VSVMETFLLY ENSBTAP00000013549/1-1302 MQYYWDVGFY LGAQILANDL TQVALAAEQL YKLNAPIWYL VSVMETFLLY ENSTTRP00000014682/1-1271 MQYYWDVGFY LGAQILVNDL TQVALAAEQL YKLNAPIWYL VSVMETFLLY bmy_01998T0/1-1168 MQYYWDVGFY LGAQILANDL TQVALAAEQL YKLNAPIWYL VSVMETFLLY BACU003243/1-1221 MQYYWDVGFY LGAQILANDL TQVALAAEQL YKLNAPVWYL VSVMETFLLY 501 550 ENSP00000419591/1-1288 QHFRPTPEPP GGPPRRAHFW LHFLLQSCQP FKTACAQGDQ CLVLVLEMNK ENSBTAP00000013549/1-1302 QHFRPTLELP GEAPHGAHFW LHFLLQSCQP LKTACPQGDQ CLVLVLEMNK ENSTTRP00000014682/1-1271 QHFRPTLEPP GETPHHAHFW LHFLLQSCQP LKMTSPQGEQ CLVLVLEMNK bmy_01998T0/1-1168 QHFRPTLEPP GETPHHAHFW LHFLLQSCQP LKMTCSQGEQ CLVLVLEMNK BACU003243/1-1221 QHFRPTLEPP GETPHHAHFW LHFLLQSCQP LKMTCSQGEQ CLVLVLEMNK 551 600 ENSP00000419591/1-1288 VLLPAKLEVR GTDPVSTVTL SLLEPETQ-- --DIPSSWTF PVASICGVSA ENSBTAP00000013549/1-1302 VLLPARLEVQ GTNPVSAVTL SLLEPEKQ-- --DVPSSWTF QVASISGVSV ENSTTRP00000014682/1-1271 VLLPARLEAQ GTNPVSAVTV SLLEPGKQ-- --DVPSSWTF PVASISGVSV bmy_01998T0/1-1168 VLLPARLEAQ GTNPVSTVTV SLLEPGKQVI SPDVPSSWTF PVASISGVSV BACU003243/1-1221 VLLPARLEAQ GTNPVSTVTV SLLEPGKQVI SPDVPSSWTF PVASISGVSV 601 650 ENSP00000419591/1-1288 SKRDERCCFL YALPPAQDVQ LCFPSVGHCQ WFCGLIQAWV TNPDSTAPAE ENSBTAP00000013549/1-1302 SKRDERCCFL YAPPPAQDVQ LCFPSAGHCQ WFCGLIQALV KSPDSGAPAE ENSTTRP00000014682/1-1271 SKRDGRCCFL YALPPAQDVQ LCFPSGGHCQ WFCGLIQALV KNPDSTAAAE bmy_01998T0/1-1168 SKRDERCCFL YALPPAQDVQ LCFPSGGHCQ WFCGLIQALV KNPDSTAAAE BACU003243/1-1221 SKRDERCCFL YALPPAQDVQ LCFPSGGHCQ WFCGLIQALV KNPDSTAAAE 651 700 ENSP00000419591/1-1288 EAEGAGEMLE FDYEYTETGE RLVLGKGTYG VVYAGRDRHT RVRIAIKEIP ENSBTAP00000013549/1-1302 ETEGAGEVLE FDYEYTESGE RLVLGKGTYG VVYAGRDRHT RVRIAIKEIP ENSTTRP00000014682/1-1271 EAEGGGEVLE FDYEYTESGE RLVLGKGTYG VVYAGRDRRT RVRIAIKEIP bmy_01998T0/1-1168 EAEGGGEVLE FDYEYTESGE RLVLGKGTYG VVYAGRDRHT R--------- BACU003243/1-1221 EEEGRGEVLE FDYEYTESGE RLVLGKGTYG VVYAGRDRRT RVRIAIKEIP 701 750 ENSP00000419591/1-1288 ERDSRFSQPL HEEIALHRRL RHKNIVRYLG SASQGGYLKI FMEEVPGGSL ENSBTAP00000013549/1-1302 ERDSRFSQPL HEEIALHKRL RHKNIVRYLG SVSQGGYLKI FMEEVPGGSL ENSTTRP00000014682/1-1271 ERDSRFSQPL HEEIALHKRL RHKNIVRYLG SVSQGGYLKI FMEEVPGGSL bmy_01998T0/1-1168 --------PL HEEIALHKRL RHKNIVRSLG SASQGGYLKI FMEEVPGGSL BACU003243/1-1221 ERDSRFSQPL HEEIALHKRL RHKNIVRYLG SASQGGYLKI FMEEVPGGSL 751 800 ENSP00000419591/1-1288 SSLLRSVWGP LKDNESTISF YTRQILQGLG YLHDNHIVHR DIKGDNVLIN ENSBTAP00000013549/1-1302 SSLLRSVWGP LQDNESTISF YTRQILQGLS YLHDNHIVHR DIKGDNVLIN ENSTTRP00000014682/1-1271 SSLLRSVWGP LQDNESTISF YIRQILQGLS YLHDNRIVHR DIKGDNVLIN bmy_01998T0/1-1168 SSLLRSVWGP LQDNESTISF YTRQILQGLS YLHDNRIVHR DIKGDNVLIN BACU003243/1-1221 SSLLRSVWGP LQDNESTISF YTRQILQGLG YLHDNRIVHR DIKGDNVLIN 801 850 ENSP00000419591/1-1288 TFSGLLKISD FGTSKRLAGI TPCTETFTGT LQYMAPEIID QGPRGYGKAA ENSBTAP00000013549/1-1302 TFSGLLKISD FGTSKRLAGI TPCTETFTGT LQYMAPEIID QGPRGYGKAA ENSTTRP00000014682/1-1271 TFSGLLKISD FGTSKRLAGI TPCTETFTGT LQYMAPEIID QGPRGYGKAA bmy_01998T0/1-1168 TFSGLLKISD FGTSKRLAGI TPCTETFTGT LQYMAPEIID QGPRGYGKAA BACU003243/1-1221 TFSGLLKISD FGTSKRLAGI TPCTETFTGT LQYMAPEIID QGPRGYGKAA 851 900 ENSP00000419591/1-1288 DIWSLGCTVI EMATGRPPFH ELGSPQAAMF QVGMYKVHPP MPSSLSAEAQ ENSBTAP00000013549/1-1302 DIWSLGCTVI EMATGHPPFH ELGSPQAAMF QVGMYKVHPP MPGSLSAEAQ ENSTTRP00000014682/1-1271 DIWSLGCTVI EMATGRPPFH ELGSPQAAMF QVGMYKVHPP MPSSLSAEAQ bmy_01998T0/1-1168 DIWSLGCTVI EMATGRPPFH ELGSPQAAMF QVGMYKVHPP MPSSLSAEAQ BACU003243/1-1221 DIWSLGCTVI EMATGRPPFH ELGSPQAAMF QVGMYKVHPP MPISLSAEAQ 901 950 ENSP00000419591/1-1288 AFLLRTFEPD PRLRASAQTL LGDPFLQPGK RSRSPSSPRH APRPSDAPSA ENSBTAP00000013549/1-1302 AFLLRTFEPD PRLRASAQAL LADPFLQPGK RSRSPGSPRQ ALRSSEAPSA ENSTTRP00000014682/1-1271 AFLLRTFEPD PRLRASAQAL LEDPFLQPGK RSRNPGSPQY ALRPSDAPSA bmy_01998T0/1-1168 AFLLRTFEPD PRLRASAQAL LEDPFLQPGK RSCLPGSPQH ALRSSDTPSA BACU003243/1-1221 AFLLRTFEPD PRLRASAQAL LEDPFLQPGK RSCRPGSPQH ALRSSDAPSA 951 1000 ENSP00000419591/1-1288 SPTPSANSTT QSQTFPCPQA PSQHPPSPPK RCLSYGGTSQ LRVPEEPAAE ENSBTAP00000013549/1-1302 SLAPSADSTS QSQTFPRPQA PSQHPPSPPK RCLSYGDTSQ LRVPEEPGAD ENSTTRP00000014682/1-1271 SPTPLAAFTS QSQTFPRPQA PSQHPPSPPK RWLSYGDTSQ LRVPEEPGAE bmy_01998T0/1-1168 SPTPSADLTS QSQTFPRPQA PSQHPPSPPK RCLSYGDTCQ LRVPEEPGAE BACU003243/1-1221 SPTPSADLTS QSQTFPRPQA PSQHPPSLPK RCLSYGDTCQ LRVPEEPGAE 1001 1050 ENSP00000419591/1-1288 EPASPEESSG LSLLHQESKR RAMLAAVLEQ ELPALAENLH QEQKQE---- ENSBTAP00000013549/1-1302 EPASPEESSG LSLLHQESRR RATLATVLEQ ELPALAESLR LEQEQDPSFP ENSTTRP00000014682/1-1271 EPASPEESSG LSLLHQESKR RAMLATVLEQ ELQALVESLH LEQE------ bmy_01998T0/1-1168 EPASPEESSG LSLLHQESKR RAMLATVLEQ ELQALAESLR LEQE------ BACU003243/1-1221 EPASPEESSG LSLLHQESKR RAMLATVLKQ ELQALAESLC LEQE------ 1051 1100 ENSP00000419591/1-1288 -QGARLGRNH VEELLRCLGA HIHTPNRRQL AQELRALQGR LRAQGLGPAL ENSBTAP00000013549/1-1302 SQGPRLERSH VEQLLLCLRA HIHTPNRRQL AQELRGLQGQ LRAQGLEPEL ENSTTRP00000014682/1-1271 -QGSHLGRNH VEQLLHCLRA HIHTPNRRQL AQELQELQGQ LRAQGLGPEI bmy_01998T0/1-1168 ---------- ---------- ---------- ---------- ---------- BACU003243/1-1221 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000419591/1-1288 LHRPLFAFPD AVKQILRKRQ IRPHWMFVLD SLLSRAVRAA LGVLGPEVEK ENSBTAP00000013549/1-1302 LQGPLFAFPD EVKQVLRRRQ IRPHWMFVLD SLLSRAVRAA LAVLAPEVEE ENSTTRP00000014682/1-1271 LQGPLFAFPD AVKQILHRRQ IRPHWMFVLD SLLSRAVLAA LAVLAPEAEK bmy_01998T0/1-1168 ---------- QVKQILRRRQ IRPHWMFVLD SLLSRAVRAA LAVLAPEAEK BACU003243/1-1221 -QXPLFAFPD AVKQILHRRQ IRPHWMFVLD SLLSRAVRAA LTVLAPEAEK 1151 1200 ENSP00000419591/1-1288 EAVSPRSEEL SNEGDSQQS- ---PGQQSPL PVEPEQGPAP LMVQLSLLRA ENSBTAP00000013549/1-1302 EAVLPKSEEA SNAEESEPKQ QETPAEPSPL LGEPEQGTPS LMVQLGLLRA ENSTTRP00000014682/1-1271 EAVPPKSEES SKEEESQEKQ QETPVQRSPL PGEPEQGTPP SMVQLGLLRA bmy_01998T0/1-1168 EAVPPKLEES NKEEESQRMQ QETPVRRNLL PGEPEQGTPP SMVQLGLLRA BACU003243/1-1221 EAVPPKSEES NEEEESQRMQ QETPVQGNPL PGEPQQGTPP SMVQLGLLRA 1201 1250 ENSP00000419591/1-1288 ETDRLREILA GKEREYQALV QRALQRLNEE ARTYVLAPEP PTALSTDQGL ENSBTAP00000013549/1-1302 ETDRLRDVLA EKERECQALV QLALQRVSGE ARTCALASEP PAALAVDQGL ENSTTRP00000014682/1-1271 ETDRLRDVLA EKERECQALV QLTLQRVSG- --------EP AAALTVDHGL bmy_01998T0/1-1168 ETDRLRDVLA EKERECQVLV QLTLQHVSGE ARTWAQASEP PAALTVDQGL BACU003243/1-1221 ETDRLRDVLA EKERECQVLV QLTLQHVSGE ARTWALASEP PAALTVDQGL 1251 1300 ENSP00000419591/1-1288 VQWLQELNVD SGTIQMLLNH SFTLHTLLTY ATRDDLIYTR IRGGMVCRIW ENSBTAP00000013549/1-1302 VQWLQELNVD SGTIQTLLNH RKNLHALLTC ATRDDLIYTG IRGGMICRIW ENSTTRP00000014682/1-1271 VRWLQELNVD SGTIRTLLNH SFTLHALLTC ATRDDLIYTR IRGGMVCRIW bmy_01998T0/1-1168 VRWLQELNVD SGTIQTGRDD MPHLESHFGT ASK---IHAS YP-------W BACU003243/1-1221 VRWLQELNVD SGTIQTLLNH SFTLHALLTC ATRDDLIYTR IR-------Y 1301 1350 ENSP00000419591/1-1288 RAILAQRAGS TPVTSGP--- - ENSBTAP00000013549/1-1302 RAILAQRTRS TPVTPGPQEA E ENSTTRP00000014682/1-1271 RAILAQRARS TPVTSGPR-- - bmy_01998T0/1-1168 PA-------- -----GG--- - BACU003243/1-1221 VL-------- -----GP--- -