KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:43 2014 Check: 00 .. Name: ENSTTRP00000000457/1-120 Len: 225 Check: 4360 Weight: 1.00 Name: BACU014439/1-216 Len: 225 Check: 7765 Weight: 1.00 Name: ENSP00000356864/1-152 Len: 225 Check: 3762 Weight: 1.00 Name: bmy_13965T0/1-161 Len: 225 Check: 4680 Weight: 1.00 Name: ENSBTAP00000013559/1-152 Len: 225 Check: 5598 Weight: 1.00 // 1 50 ENSTTRP00000000457/1-120 ---------- --IWRE-GQL LLCXXXXXXX XXXXXXXXXX XXXXXXXX-- BACU014439/1-216 ---------M AVLSKEYGFV ILTGAASFIM VTHLAINVSK ARKKYKVEVS ENSP00000356864/1-152 ---------M AVLSKEYGFV LLTGAASFIM VAHLAINVSK ARKKYKVE-- bmy_13965T0/1-161 MCSFSHRVRM AVLSKEYGFV ILTGAASFIM VTHLAINVSK ARKKYKVE-- ENSBTAP00000013559/1-152 ---------M AVLSKEYGFV ILTGAASFLM VTHLAINVSK ARKKYKVE-- 51 100 ENSTTRP00000000457/1-120 -----XXXXX XXXXXXXXXX XXYPTMYSTD PENGHLFNCI QRAHQNTLEV BACU014439/1-216 GNTAVPLWVR RGKNLFSVVE GKYPTMYSTD PENGHLFNCI QRAHQNTLEV ENSP00000356864/1-152 ---------- ---------- --YPIMYSTD PENGHIFNCI QRAHQNTLEV bmy_13965T0/1-161 ---------- ---------- --YPTMYSTD PENGHLFNCI QRAHQNTLEV ENSBTAP00000013559/1-152 ---------- ---------- --YPTMYSTD PENGHIFNCI QRAHQNTLEV 101 150 ENSTTRP00000000457/1-120 YPPFLFFLAV GGVYHPRVVS GLGLAWIVGR VLYAYGYYTG ---------- BACU014439/1-216 YPPFLFFLAV GGVYHPRVVS GLGLAWIVGR VLYAYGYYTG EPRKRKRGAL ENSP00000356864/1-152 YPPFLFFLAV GGVYHPRIAS GLGLAWIVGR VLYAYGYYTG EPSKRSRGAL bmy_13965T0/1-161 YPPFLFFLAV GGVYHPRVVS GLGLAWIVGR VLYAYGYYTG EPRKRKRGAL ENSBTAP00000013559/1-152 YPPFLFFLAV GGVYHPRIVS GLGLAWIVGR VLYAYGYYTG EPRKRQRGAL 151 200 ENSTTRP00000000457/1-120 ---------- ---------- ---------- ---------- ---------- BACU014439/1-216 SFIALIGLMG TTRNCQNLVF SQAAPTVEVT QGPLKTQGEI IVGLARYHIC ENSP00000356864/1-152 GSIALLGLVG TTV-CSAFQH ---------- ---------- -LGWVKSGLG bmy_13965T0/1-161 SFIALIGLMG TTV-CSAFQH ---------- ---------- -LGWVRTGLS ENSBTAP00000013559/1-152 SFIALIGLMG TTV-CSAFQH ---------- ---------- -LGWVRTGLN 201 250 ENSTTRP00000000457/1-120 ---------- ---------- ----- BACU014439/1-216 ARCANIHQER LIQLFSSSNY SFYPS ENSP00000356864/1-152 SGPKCCH--- ---------- ----- bmy_13965T0/1-161 SGCKSCH--- ---------- ----- ENSBTAP00000013559/1-152 SGCKSCH--- ---------- -----