KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:44 2014 Check: 00 .. Name: ENSBTAP00000013582/1-234 Len: 344 Check: 157 Weight: 1.00 Name: ENSP00000369895/1-242 Len: 344 Check: 4564 Weight: 1.00 Name: ENSTTRP00000008791/1-336 Len: 344 Check: 1024 Weight: 1.00 Name: bmy_00909T0/1-162 Len: 344 Check: 7304 Weight: 1.00 Name: BACU009376/1-218 Len: 344 Check: 5185 Weight: 1.00 // 1 50 ENSBTAP00000013582/1-234 ---------- ---------- ---------- ---------- ---------- ENSP00000369895/1-242 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008791/1-336 MTSTLFFSFL FWWLRTDNEW SLYSPKLSWA VTIVPLSSLG RAAQLVVPIP bmy_00909T0/1-162 ---------- ---------- ---------- ---------- ---------- BACU009376/1-218 MSSLRTLNVL EDGSRFDY-- ---------- ---------- ---------- 51 100 ENSBTAP00000013582/1-234 ---------- ---------- ---------- ---------- ---------M ENSP00000369895/1-242 ---------- ---------- ---------- ---------- --------MA ENSTTRP00000008791/1-336 AFPGIDPLFS FSSTIPLKKS CCAVHRARCQ KKVGDTGEFR RSFGLSQSQM bmy_00909T0/1-162 ---------- ---------- ---------- ---------- ---------M BACU009376/1-218 ---------- --------KR RSGQSNEESI IRRKSMTKFR RSFGPSQSEM 101 150 ENSBTAP00000013582/1-234 EAKSESTQAS ESWSSHPVYA RYWQHYHQAM AWMRSHQSAY QKAVESVVTS ENSP00000369895/1-242 AVKASTSKAT RPWYSHPVYA RYWQHYHQAM AWMQSHHNAY RKAVESCFNL ENSTTRP00000008791/1-336 TAEPATALAV ESWPSHPVYA RYWQHYHQAM AWMRCHQNAY RKAMESCFMS bmy_00909T0/1-162 AAEPATAQAL ESWSSHPVYA RYWQHYHQAM AWMRSHQNAY RKAMKSFCTS BACU009376/1-218 AAEPATAQAL ESWSSHLVYA RYWQHYHQAM AWVRSHQNAY RKAVKSFSTS 151 200 ENSBTAP00000013582/1-234 PWYYPATDLA QSPAAKGGTS PKSRSKSPSA SGDACRRRSR PGKPGPQRR- ENSP00000369895/1-242 PWYLPSALLP QSSYDNEAAY PQSFYDHHVA WQDYPCSSSH FRRSGQHPRY ENSTTRP00000008791/1-336 PWYSSAMGLP QSAYAKEGRR PQSCYEHPPA SWDSHHSHSH AGGRGPHPR- bmy_00909T0/1-162 PWYFSAMGLP QSAYAKKGRR PQSCYKRPPA SRDSHHRHSR AGGRGPHPR- BACU009376/1-218 PWYFSAMGLP QSAYAKKGRR PQSCYKRPPA SRDSHRRHSR AGGRGPHPR- 201 250 ENSBTAP00000013582/1-234 -------STE KPARFAE--- DNDSESDDCG IVCDLSNMVI TDELRQYFAE ENSP00000369895/1-242 SSRIQASTKE DQALSKEEEM ETESDAE--- VECDLSNMEI TEELRQYFAE ENSTTRP00000008791/1-336 -------GRE EPAWYAEEEK EKESESDDGG IECDVSNMEI TEELRQYFAQ bmy_00909T0/1-162 -------GRE QPAWSAEEEK EKESESDDGG IECDVSNMEI TEELRQYFAQ BACU009376/1-218 -------GRE QPAWSAEKEK EKESESDDGG IECDVSNMEI TEELRQYFAQ 251 300 ENSBTAP00000013582/1-234 TEQHREELRR QHQLDAARLK DYVNADHGLY CDKRGRSTLP PTERPGERRQ ENSP00000369895/1-242 TERHREERRR QQQLDAERLD SYVNADHDLY CNTR-RSVEA PTERPGERRQ ENSTTRP00000008791/1-336 TERHQEERRR QQQLDAARLN DYVNADHDLY RDTRRRSVLP PAERPGERRR bmy_00909T0/1-162 TERHQEERRK CSPPASVAL- ---------- ---------- ---------- BACU009376/1-218 TERHQEERRH QNDETEGKVK E----GSDLY ---------- ---------- 301 350 ENSBTAP00000013582/1-234 AEMKRLYGAS AAKIQAMETA MQLSFDKHCD RKQPKYWPVI PLKF ENSP00000369895/1-242 AEMKRLYGDS AAKIQAMEAA VQLSFDKHCD RKQPKYWPVI PLKF ENSTTRP00000008791/1-336 AEMRHLYGAS AAKIQAMEAA VQLSFDKHCD RKQPKYWPVI PLKF bmy_00909T0/1-162 ---------- ---------- ---------- ---------- ---- BACU009376/1-218 ---------- ---------- ---------- ---------- ----