KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:50:45 2014 Check: 00 ..
Name: bmy_19397T0/1-730 Len: 875 Check: 9238 Weight: 1.00
Name: BACU013987/1-857 Len: 875 Check: 9689 Weight: 1.00
Name: ENSBTAP00000013586/1-697 Len: 875 Check: 8756 Weight: 1.00
Name: ENSP00000307617/1-697 Len: 875 Check: 7687 Weight: 1.00
Name: ENSTTRP00000011358/1-696 Len: 875 Check: 7466 Weight: 1.00
//
1 50
bmy_19397T0/1-730 ---------- ---------- -----MCCAA AGAYARGVWL L---------
BACU013987/1-857 MSQKQMKEAF VSNHNGTSVL EITEGLCLPA LCILCRGLLI ILSQHLCSSS
ENSBTAP00000013586/1-697 ---------- ---------- -------MAR LVAVCRD--- ----------
ENSP00000307617/1-697 ---------- ---------- -------MAR LVAVCRD--- ----------
ENSTTRP00000011358/1-696 ---------- ---------- -------MAR LVAVCRD--- ----------
51 100
bmy_19397T0/1-730 ---------- ---------- ---------- ---------- ----------
BACU013987/1-857 HTWRTRFFID FAFLIVPLVT TLTIFASFVL LEYLVVIIFG AVLLYETYCR
ENSBTAP00000013586/1-697 ---------- ---------- ---------- ---------- ----------
ENSP00000307617/1-697 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000011358/1-696 ---------- ---------- ---------- ---------- ----------
101 150
bmy_19397T0/1-730 -----QAGAG RRLQRQ---- -ERRRRQQLG GGGDGGNGSV GDDGATGGSV
BACU013987/1-857 RTCYARMPVG KILEKFLKIS LESEYIPAI- -----SCFRV INSAFTAVAI
ENSBTAP00000013586/1-697 ---------G EEEFPF---- -ERRQIPLY- ---------- IDDTLT----
ENSP00000307617/1-697 ---------G EEEFPF---- -ERRQIPLY- ---------- IDDTLT----
ENSTTRP00000011358/1-696 ---------G EEEFPF---- -ERRQIPLY- ---------- IDDTLT----
151 200
bmy_19397T0/1-730 QGRGGGVPLR EEADSPLHRR HPHDF---LK RI--PKRHSM LKQQDLSIAM
BACU013987/1-857 LAVDFPLFPR RFAKTELYGT GAMDFGVGAF IFGTAMRHSM LKQQDLSIAM
ENSBTAP00000013586/1-697 -------MVM EFPDNVLNLD GHQNNGTQLK QF--IQRHSM LKQQDLSIAM
ENSP00000307617/1-697 -------MVM EFPDNVLNLD GHQNNGAQLK QF--IQRHGM LKQQDLSIAM
ENSTTRP00000011358/1-696 -------MVM EFPDNVLNLD GHQNNGAQLK QF--IQRHSM LKQQDLSIAM
201 250
bmy_19397T0/1-730 VVTSREVLSA LSQLVPCVGC RRSVERLFSQ LVESGNPALE PLTVGPKGVL
BACU013987/1-857 VVTSREVLSA LSQLVPCVGC RRSVERLFSQ LVESGNPALE PLTVGSKGVL
ENSBTAP00000013586/1-697 VVTSREVLSA LSQLVPCVGC RRSVERLFSQ LVESGNPALE PLTVGPKGVL
ENSP00000307617/1-697 VVTSREVLSA LSQLVPCVGC RRSVERLFSQ LVESGNPALE PLTVGPKGVL
ENSTTRP00000011358/1-696 VVTSREVLSA LSQLVPCVGC RRSVERLFSQ LVESGNPALE PLTVGPKGVL
251 300
bmy_19397T0/1-730 SVTRSCMTDA KKLYTLFYVH GSKLNDMIDA IPKSKKNKRC QLHSLDTHKP
BACU013987/1-857 SVTRSCMTDA KKLYTLFYVH GSKLNDMIDA IPKSKKNKRC QLHSLDTHKP
ENSBTAP00000013586/1-697 SVTRSCMTDA KKLYTLFYVH GSKLNDMIDA IPKSKKNKRC QLHSLDTHKP
ENSP00000307617/1-697 SVTRSCMTDA KKLYTLFYVH GSKLNDMIDA IPKSKKNKRC QLHSLDTHKP
ENSTTRP00000011358/1-696 SVTRSCMTDA KKLYTLFYVH GSKLNDMIDA IPKSKKNKRC QLHSLDTHKP
301 350
bmy_19397T0/1-730 KPLGSYS--- ---------- ---------- ---------- ----VHGCFC
BACU013987/1-857 KPLGEGSSSS VSSEKLSTDK RSSEDHRKDS KCRIIFHYGP FQGTARGCWM
ENSBTAP00000013586/1-697 KPLG------ ---------- ---------- ---------- ------GCWM
ENSP00000307617/1-697 KPLG------ ---------- ---------- ---------- ------GCWM
ENSTTRP00000011358/1-696 KPLG------ ---------- ---------- ---------- ------GCWM
351 400
bmy_19397T0/1-730 PPSPSTVSQL PRQNC----- -LGLGVPVLN FEVFLFN--R FCTDCKNKVL
BACU013987/1-857 -----DVWEL MSQECRDEVV LIDSSCLLET LETYLRKH-R FCTDCKNKVL
ENSBTAP00000013586/1-697 -----DVWEL MSQECRDEVV LIDSSCLLET LETYLRKHSR FCTDCKNKVL
ENSP00000307617/1-697 -----DVWEL MSQECRDEVV LIDSSCLLET LETYLRKH-R FCTDCKNKVL
ENSTTRP00000011358/1-696 -----DVWEL MSQECRDEVV LIDSSCLLET LETYLRKH-R FCTDCKNKVL
401 450
bmy_19397T0/1-730 RAYNILIGEL DCSKEKGYCA ALYEGLRCCP HERHIHVCCE TDFIAHLLGR
BACU013987/1-857 RAYNILIGEL DCSKEKGYCA ALYEGLRCCP HERHIHVCCE TDFIAHLLGR
ENSBTAP00000013586/1-697 RAYNILIGEL DCSKEKGYCA ALYEGLRCCP HERHIHVCCE TDFIAHLLGR
ENSP00000307617/1-697 RAYNILIGEL DCSKEKGYCA ALYEGLRCCP HERHIHVCCE TDFIAHLLGR
ENSTTRP00000011358/1-696 RAYNILIGEL DCSKEKGYCA ALYEGLRCCP HERHIHVCCE TDFIAHLLGR
451 500
bmy_19397T0/1-730 AEPEFAGGYE RRERHAKTID IAQEEVLTCL GIHLYERLHR IWQKLRAEEQ
BACU013987/1-857 AEPEFAGGYE RRERHAKTID IAQEEVLTCL GIHLYERLHR IWQKLRAEEQ
ENSBTAP00000013586/1-697 AEPEFAGG-- RRERHAKTID IAQEEVLTCL GIHLYERLHR IWQKLRAEEQ
ENSP00000307617/1-697 AEPEFAGG-- RRERHAKTID IAQEEVLTCL GIHLYERLHR IWQKLRAEEQ
ENSTTRP00000011358/1-696 AEPEFAGG-- RRERHAKTID IAQEEVLTCL GIHLYERLHR IWQKLRAEEQ
501 550
bmy_19397T0/1-730 TWQMLFYLGV DALRKSFEMT VEKVQGISRL EQLCEEFSEE ERVRELKQEK
BACU013987/1-857 TWQMLFYLGV DALRKSFEMT VEKVQGISRL EQLCEEFSEE ERVRELKQEK
ENSBTAP00000013586/1-697 TWQMLFYLGV DALRKSFEMT VEKVQGISRL EQLCEEFSEE ERVRELKQEK
ENSP00000307617/1-697 TWQMLFYLGV DALRKSFEMT VEKVQGISRL EQLCEEFSEE ERVRELKQEK
ENSTTRP00000011358/1-696 TWQMLFYLGV DALRKSFEMT VEKVQGISRL EQLCEEFSEE ERVRELKQEK
551 600
bmy_19397T0/1-730 KRQKRKNRRK NKCVCDIPTP LQTADEKEVS QEKETDFIEN -SCKACGSTE
BACU013987/1-857 KRQKRKNRRK NKCVCDIPTP LQTADEKE-- ---ETDFIEN -SCKACGSTE
ENSBTAP00000013586/1-697 KRQKRKNRRK NKCVCDIPTP LQTADEKEVS QEKETDFIEN -SCKACGSTE
ENSP00000307617/1-697 KRQKRKNRRK NKCVCDIPTP LQTADEKEVS QEKETDFIEN SSCKACGSTE
ENSTTRP00000011358/1-696 KRQKRKNRRK NKCVCDIPTP LQTADEKEVS QEKETDFIEN -SCKACGSTE
601 650
bmy_19397T0/1-730 DGNSCVEVIV TNENTSCTCP SSGNLLGSPK IKKGLSPHCN GSDCGYSSSM
BACU013987/1-857 DGNSCVEVIV TNENTSCTCP SSGNLLGSPK IKKGLSPHCN GSDCGYSSSM
ENSBTAP00000013586/1-697 DGNSCVEVIV TNENTSCTCP TSGNLLGSPK IKKGLSPHCN GSDCGYSSSM
ENSP00000307617/1-697 DGNTCVEVIV TNENTSCTCP SSGNLLGSPK IKKGLSPHCN GSDCGYSSSM
ENSTTRP00000011358/1-696 DGNSCVEVIV TNENTSCTCP SSGNLLGSPK IKKGLSPHCN GSDCGYSSSM
651 700
bmy_19397T0/1-730 EGSETGSREG SDVACTEGIC NHDEHGDDSC VHHCEDKEDD GDSCVECWAN
BACU013987/1-857 EGSETGSREG SDVACTEGIC NHDEHGDDSC VHHCEDKEDD GDSCVECWAN
ENSBTAP00000013586/1-697 EGSETGSREG SDVACTEGIC NHDEHGDDSC VHHCEDKEDD GDSCVECWAN
ENSP00000307617/1-697 EGSETGSREG SDVACTEGIC NHDEHGDDSC VHHCEDKEDD GDSCVECWAN
ENSTTRP00000011358/1-696 EGSETGSREG SDVACTEGIC NHDEHGDDSC VHHCEDKEDD GDSCVECWAN
701 750
bmy_19397T0/1-730 SEENTTKGKN KKKKKKSKML KCDEHIQKLG SCITDPGNRE ASGNTVHTVF
BACU013987/1-857 SEENTTKGKN KKKKKKSKML KCDEHIQKLG SCITDPGNRE ASGNTVHTVF
ENSBTAP00000013586/1-697 SEENSTKGKN KKKKKKSKML KCDEHIQKLG SCITDPGTRE TSGNTVHTVF
ENSP00000307617/1-697 SEENDTKGKN KKKKKKSKIL KCDEHIQKLG SCITDPGNRE TSGNTMHTVF
ENSTTRP00000011358/1-696 SEENTTKGKN KKKKKKSKML KCDEHIQKLG SCITDPGNRE ASGNTVHTVF
751 800
bmy_19397T0/1-730 HRDKTKDTHP ESCCSSEKGG QPLPWFEHRK NVPQFAEPTE TSFGPDSGKG
BACU013987/1-857 HRDKTKDTHP ESCCSSEKGG QPLPWFEHRK NVPQFAEPTE ASFGPDSGKG
ENSBTAP00000013586/1-697 HRDKTKDAHP ESCCSSEKGG QPLAWFEHRK NVPQCAEPTE TSFGPDSGKG
ENSP00000307617/1-697 HRDKTKDTHP ESCCSSEKGG QPLPWFEHRK NVPQFAEPTE TLFGPDSGKG
ENSTTRP00000011358/1-696 HRDKTKDTHP ESCCTSEKGG QPLPWFEHRK NVPQFAEHTE TSFGPDSGKG
801 850
bmy_19397T0/1-730 AKSLVELLDE SECTSDEEIF ISQDEIQSFM ANNQSFYSNR EQYRQHLKEK
BACU013987/1-857 AKSLVELLDE SECTSDEEIF ISQDEIQSFM ANNQSFYSNR EQYRQHLKEK
ENSBTAP00000013586/1-697 AKSLVELLDE SECTSDEEIF ISQDEIQSFM ANNQSFYSNR EQYRQHLKEK
ENSP00000307617/1-697 AKSLVELLDE SECTSDEEIF ISQDEIQSFM ANNQSFYSNR EQYRQHLKEK
ENSTTRP00000011358/1-696 AKSLVELLDE SECTSDEEIF ISQDEIQSFM ANNQSFYSNR EQYRQHLKEK
851 900
bmy_19397T0/1-730 FNKYCRLNDH KSPICSGWLT TAGAN
BACU013987/1-857 FNKYCRLNDH KSPICSGWLT TAGAN
ENSBTAP00000013586/1-697 FNKYCRLNDH KRPICSGWLT TAGAN
ENSP00000307617/1-697 FNKYCRLNDH KRPICSGWLT TAGAN
ENSTTRP00000011358/1-696 FNKYCRLNDH KSPICSGWLT TAGAN