KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:45 2014 Check: 00 .. Name: bmy_12829T0/1-632 Len: 1049 Check: 1208 Weight: 1.00 Name: ENSP00000380120/1-714 Len: 1049 Check: 8594 Weight: 1.00 Name: ENSBTAP00000013588/1-713 Len: 1049 Check: 1520 Weight: 1.00 Name: BACU012136/1-813 Len: 1049 Check: 2279 Weight: 1.00 Name: ENSTTRP00000007193/1-766 Len: 1049 Check: 2892 Weight: 1.00 // 1 50 bmy_12829T0/1-632 SGLRRARIPG PEGLDAVWPG WHPAGAGWAE AGRGRAGGGD AVPDLLRRAA ENSP00000380120/1-714 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000013588/1-713 ---------- ---------- ---------- ---------- ---------- BACU012136/1-813 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007193/1-766 ---------- ---------- ---------- AQRGLLWPVS RRSDVRSAPE 51 100 bmy_12829T0/1-632 ERGPGRDVGL KGACPVGPEP APRAQWPREA ERRDPGRGAR RRSSPRPGAS ENSP00000380120/1-714 ---------- ---------- ---------- --MNTLQG-- ---------- ENSBTAP00000013588/1-713 ---------- ---------- ---------- --MNESQG-- ---------- BACU012136/1-813 ---------- ---------- ---------- -------G-- ---------- ENSTTRP00000007193/1-766 GAAPDRSLGS PGPAASRRGP PFTVYFFQEQ QKMNESQG-- ---------- 101 150 bmy_12829T0/1-632 GARGWSASPD WVGGASSGLQ AVVDPAALGE RDLGEPAPGP AGERPGGFDR ENSP00000380120/1-714 ---------- ---------- ----PVSFKD VAV------- ---------- ENSBTAP00000013588/1-713 ---------- ---------- ----SVSFRD VAV------- ---------- BACU012136/1-813 ---------- ---------- ----PVSFKD VAV------- ---------- ENSTTRP00000007193/1-766 ---------- ---------- ----PVSFTD VAV------- ---------- 151 200 bmy_12829T0/1-632 FPEVEGPDWR AGPAAPDGAP LGLVSCWFPG GAGATGSAGT CRVHPSLQPR ENSP00000380120/1-714 --DFTQEEWQ ---------- ---------- ---------- -----QLDP- ENSBTAP00000013588/1-713 --DFTQEEWQ ---------- ---------- ---------- -----QLDP- BACU012136/1-813 --DFTQEEWQ ---------- ---------- ---------- -----QLDP- ENSTTRP00000007193/1-766 --DFTQEEWQ ---------- ---------- ---------- -----QLDP- 201 250 bmy_12829T0/1-632 SCSSSCCRRV GLSHVSLKAH QPSLFIFTNE SNLIVLELER YTVYSLRFFQ ENSP00000380120/1-714 ---------- ---------- -------DEK ITYRDVMLEN YS-------- ENSBTAP00000013588/1-713 ---------- ---------- -------EEK MTYRDVMLEN YS-------- BACU012136/1-813 ---------- ---------- -------DEK TTYRDVMLEN YS-------- ENSTTRP00000007193/1-766 ---------- ---------- -------DEK TTYRDVMLEN YS-------- 251 300 bmy_12829T0/1-632 EQQKMNESQR PRAEQQVQVG SFSSTGYDST KPNVILKLEQ GEEPWVADGE ENSP00000380120/1-714 ---------- ---------- HLVSVGYDTT KPNVIIKLEQ GEEPWIMGGE ENSBTAP00000013588/1-713 ---------- ---------- HLVSVGYDST KPNVIIKLEQ GEEPWVVDSK BACU012136/1-813 ---------- ---------- HLVSVGYDST KPNVILKLEQ GEEPWVADGE ENSTTRP00000007193/1-766 ---------- ---------- HLVSVGYDST KPNVILKLEQ GEEPWVADGE 301 350 bmy_12829T0/1-632 FPRQFHPEEV WKVDDLMERA QENKDECSRQ AVSINSRTLT EEREVAFDKT ENSP00000380120/1-714 FPCQHSPEA- WRVDDLIERI QENEDKHSRQ AACINSKTLT EEKENTFSQI ENSBTAP00000013588/1-713 FLQQQHSEKV WKVGDLIERI QENGDECSRQ AVSINSRTLT EEREDAFDKT BACU012136/1-813 FPRQFHSEEV WKVDDLMERA QENKDECSRQ AVSINSRTLT EEREVAFDKT ENSTTRP00000007193/1-766 FPRQFHPEEV WKVDDLMERA QENKDECSRQ AVSINSRTLT EEREVAFDKT 351 400 bmy_12829T0/1-632 YNMEISLVPS NLISHNCVSF ---------V FTYQGIIPRN QPP-CSSCR- ENSP00000380120/1-714 Y-METSLVPS SIIAHNCVSC GKNLESISQL ISSDGSYART KPDECNECGK ENSBTAP00000013588/1-713 YNVETSLAPL NLTSYNCISC GKTLESTSEL IISDGSYARK KPDECNECGK BACU012136/1-813 YNMEISLVPS NLISHNCVSC GKTLGSTSEL IISDGSYARK KPDECSQCGK ENSTTRP00000007193/1-766 YNMEISLVPS NLMSHNCVSC GKTLGSTSEL IISDGSYARE KPDECSECGK 401 450 bmy_12829T0/1-632 ---------- ---------- ---------- ---------- ---------- ENSP00000380120/1-714 TYHGEKMCEF NQNGDTYSHN EENILQKISI LEKPFEYNEC MEALDNEAVF ENSBTAP00000013588/1-713 MY-GEKLYEF HQNGEACSQN EESI-QKISI LEKPFEYNGC TEALDNEAVF BACU012136/1-813 TYHGEKLYEF HQNGEAFSQN EESI-QKISI LEKPFEYDEC TGALDNEAVF ENSTTRP00000007193/1-766 TFHGEKLYEF HQNGEAFSQN EESI-QKISI LEKPFEYNEC TEALDNEAVF 451 500 bmy_12829T0/1-632 -------IGE LPLN------ -----AAFS- --------HP PSCPACLATW ENSP00000380120/1-714 IAHKRAYIGE KPYEWNDSGP DFIQMSNFNA YQRSQMEMKP FECSECGKSF ENSBTAP00000013588/1-713 ITHKSTYMGE KCYEWNDSRP DFIQMSNFNI YQRSQMDLKP FECRECGKSF BACU012136/1-813 ITHKRAYMGE KPYDWNGSGS DFIQMSSFNV YQRSQMELKP FECSECGKSF ENSTTRP00000007193/1-766 ITHKRAYMGE KPYDWNDSGS DFIQMSSFNV YQRSQMELKP FECSECGKSF 501 550 bmy_12829T0/1-632 CPLVLLLF-- --PAAPVPTA TAAPSPDAKT QDSLQSLQQG R--------- ENSP00000380120/1-714 CKKSKFIIHQ RAHTGEKPYE CNVCGKSFSQ KGTLTVHRRS HLEEKPYKCN ENSBTAP00000013588/1-713 CKKSKFIIHQ RAHTGEKPYA CTVCGKSFSQ KGTLTVHRRS HLEEKPYKCN BACU012136/1-813 CKKSKFIIHQ RAHTGEKPYE CNVCGKSFSQ KGTLTVHRRS HLEEKPYKCN ENSTTRP00000007193/1-766 CKKSKFIIHQ RAHTGEKPYE CNVCGKSFSQ KGTLTVHRRS HLEEKPYKCN 551 600 bmy_12829T0/1-632 ---------- ---NSLLLGA GERRTEKRGR GRQ------- --QERKPEGH ENSP00000380120/1-714 ECGKTFCQKL HLTQHLRTHS GEKPYECSEC GKTFCQKTHL TLHQRNHSGE ENSBTAP00000013588/1-713 ECGKTFCQKL HLTQHLRTHS GEKPYECNEC GKTFCQKTHL TLHQRNHSGE BACU012136/1-813 ECGKTFCQKL HLTQHLRTHS GEKPYECNEC GKTFCQKTHL TLHQRNHSGE ENSTTRP00000007193/1-766 ECGKTFCQKL HLTQHLRTHS GEKPYECNEC GKTFCQKTHL TLHQRNHSGE 601 650 bmy_12829T0/1-632 REGRDRDIG- ---------- --RGPEGQR- -QGDTAEQTR GRNKEIMGQK ENSP00000380120/1-714 RPYPCNECGK SFSRKSALSD HQRTHTGEKL YKCNECGKSY YRKSTLITHQ ENSBTAP00000013588/1-713 RPYPCSECGK SFSRKSALSD HQRTHTGEKL YKCNECGKSY YRKSTLITHQ BACU012136/1-813 RPYPCNECGK SFSRKSALSD HQRTHTGEKL YKCNECGKSY YRKSTLITHQ ENSTTRP00000007193/1-766 RPYPCNECGK SFSRKSALSD HQRTHTGEKL YKCNECGKSY YRKSTLITHQ 651 700 bmy_12829T0/1-632 RDGTEGQ--- ---------- ---------- ---------- ---------- ENSP00000380120/1-714 RTHTGEKPYQ CSECGKFFSR VSYLTIHYRS HLEEKPYECN ECGKTFNLNS ENSBTAP00000013588/1-713 RTHTGEKPYQ CSECGKFFSR VSYLTIHYRS HLEEKPYECN ECGKTFNLNS BACU012136/1-813 RTHTGEKPYQ CSECGKFFSR VSYLTIHYRS HLEEKPYECN ECGKTFNLNS ENSTTRP00000007193/1-766 RTHTGEKPYQ CSECGKFFSR VSYLTIHYRS HLEEKPYECN ECGKTFNLNS 701 750 bmy_12829T0/1-632 ---------- ---------- GQIR------ --TGH----- ----KMGVDW ENSP00000380120/1-714 AFIRHRKVHT EEKSHECSEC GKFSQLYLTD HHTAHLEEKP YECNECGKTF ENSBTAP00000013588/1-713 AFIRHRKVHT DEKPHECSEC GKLS--HLTS LHTTHLGEKP YECSECGKTF BACU012136/1-813 AFIRHRKVHT DEKPHECGEC GKFS--YLTD HHTTHLGEKP YECSECGKTF ENSTTRP00000007193/1-766 AFIRHRKVHT DEKPHECSEC GKFS--YLTN HHTTHLGEKP YECSECGKTL 751 800 bmy_12829T0/1-632 FS-------- --PEGQKVER EGVEG-IWGQ V-WRGIRDPH TTCCKPWGDL ENSP00000380120/1-714 LVNSAFDGHQ PLPKGEKSYE CNVCGKLFNE LSYYTEHYRS HSEEKPYGCS ENSBTAP00000013588/1-713 LENSAFNGHQ PLPTGEKSYE CNICGKVFSE LSYYTIHYRS HSEEKPYGCN BACU012136/1-813 LENSAFDGHQ SLPKGEKSYE CNICGKLFSE LSYYTIHYRS HSEEKPYGCN ENSTTRP00000007193/1-766 LENSAFDGHQ SLPKGEKSYE CNICGKLFSE LSYYTIHYRS HSEEKPYGCN 801 850 bmy_12829T0/1-632 PCGSV----- ---PLQELHS PEDQGTGWEA APF---QQHL EA-------- ENSP00000380120/1-714 ECGKTFSHNS SLFRHQRVHT GEKPYECYEC GKFFSQKSYL TIHHRIHSGE ENSBTAP00000013588/1-713 ECGKTFSHNS SLFRHQRVHT GEKPYECYEC GKFFSQKSYL TIHHRIHSGE BACU012136/1-813 ECGKTFSHNS SLFRHQRVHT GEKPYECYEC GKFFSQKSYL TIHHRIHSGE ENSTTRP00000007193/1-766 ECGKTFSHNS SLFRHQRVHT GEKPYECYEC GKFFSQKSYL TIHHRIHSGE 851 900 bmy_12829T0/1-632 ---TCSSPGT ---------- ---QAGGNRA --------LL AAARHIT-HF ENSP00000380120/1-714 KPYECSKCGK VFSRMSNLTV HYRSHSGEKP YECNECGKVF SQKSYLTVHY ENSBTAP00000013588/1-713 KPYECSKCGK VFSRMSNLTV HYRSHSGEKP YECNECGKVF SQKSYLTVHY BACU012136/1-813 KPYECSKCGK VFSRMSNLTV HYRSHSGEKP YECNECGKVF SQKSYLTVHY ENSTTRP00000007193/1-766 KPYECSKCGK VFSRMSNLTV HYRSHSGEKP YECNECGKVF SQKSYLTVHY 901 950 bmy_12829T0/1-632 RCPPAV---- ---------- ---------- ---------- ---------- ENSP00000380120/1-714 RTHSGEKPYE CNECGKKFHH RSAFNS---- ---------- HQRIHRRGNM ENSBTAP00000013588/1-713 RTHSGEKPYE CNECGKKFHH RSAFNS---- ---------- HQRIHRRGNL BACU012136/1-813 RTHSGEKPYE CNECGKKFHH RVLLVTLGGC WGRGPPQGLQ HGGVPSHGGL ENSTTRP00000007193/1-766 RTHSGEKPYE CNECGKKFHH RSAFNS---- ---------- HQRIHRRGNM 951 1000 bmy_12829T0/1-632 ---------- ---------- ---------- ---------- ---------- ENSP00000380120/1-714 NVL------- ---------- ---------- --DVENL--- ---------- ENSBTAP00000013588/1-713 NVL------- ---------- ---------- --DMGSLL-- ---------- BACU012136/1-813 AMLHDSCATA MYARPLSSHS LEEDSLVSFI YINLTPLLYP AIYTLQNRDV ENSTTRP00000007193/1-766 NVL------- ---------- ---------- --DMGMLL-- ---------- 1001 1050 bmy_12829T0/1-632 ---------- ---------- ---------- ---------- --------- ENSP00000380120/1-714 ---------- ---------- ---------- ---------- --------- ENSBTAP00000013588/1-713 ---------- ---------- ---------- ---------- --------- BACU012136/1-813 QGALQRVVGP RTPGAVHQAD VTECWMPGGV CSEISPPPPD GNLTFQNHL ENSTTRP00000007193/1-766 ---------- ---------- ---------- ---------- ---------