KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:46 2014 Check: 00 .. Name: ENSP00000278612/1-1427 Len: 1451 Check: 8429 Weight: 1.00 Name: ENSBTAP00000013589/1-1422 Len: 1451 Check: 9036 Weight: 1.00 Name: ENSTTRP00000005731/1-1430 Len: 1451 Check: 3145 Weight: 1.00 Name: bmy_11190T0/1-1444 Len: 1451 Check: 4418 Weight: 1.00 Name: BACU004589/1-1396 Len: 1451 Check: 5404 Weight: 1.00 // 1 50 ENSP00000278612/1-1427 MLLPSDVARL VLGYLQQENL ISTCQTFILE SSDLKEYAEH CTDEGFIPAC ENSBTAP00000013589/1-1422 ---------- -LGYLQQENL TSTCQAFILE SSDLKEYAEH CTDEGFIPAC ENSTTRP00000005731/1-1430 MLLPSDVARL VLGYLQQENL TSTCQAFILE SSNLKEYAEH CTDEGFIPAC bmy_11190T0/1-1444 MLLPSDVARL VLGYLQQENL TSTCQAFILE SSNLKEYAEH CTDEGFIPAC BACU004589/1-1396 ---------- -LGYLQQENL TSTCQAFILE SSNLKEYAEH CTDEGFIPAC 51 100 ENSP00000278612/1-1427 LLSLFGKNLT TILNEYVAMK TKETSNNVPA IMSSLWKKLD HTLSQIRSMQ ENSBTAP00000013589/1-1422 LLSLFGKNLT TILNEYVAMK AKETSNDVPA IMSSLWKKLD HTLSQIRSMQ ENSTTRP00000005731/1-1430 LLSLFGKNLT TILN-YVAMK AKETSNDVPA ILSSLWKKLD HTLSQIRSMQ bmy_11190T0/1-1444 LLSLFGKNLT TILNEYVAMK AKETSNDVPA ILSSLWKKLD HTLSQIRSMQ BACU004589/1-1396 LLSLFGKNLT TILNEYVAMK AK-------- ---------- ---------- 101 150 ENSP00000278612/1-1427 SSPRFAGSQR ARTRTGIAEI KRQRKLASQT APASAELLTL PYLSGQFTTP ENSBTAP00000013589/1-1422 SSPGFAASQR ARTRNGIAEI KRQRRLASQA APVSSE--PL PYLLGQFTNS ENSTTRP00000005731/1-1430 SSPGFAASQR ARTRSGIAEI KRQRRLASQA APVSSELLTL PYLSGQFTNS bmy_11190T0/1-1444 SSPGFAANQR ARTRSGIAEI KRQRRLASQA APVSSELLTL PYLSGQFTNS BACU004589/1-1396 ---------- ARTRSGIAEI KRQRRLASQA APVSSELLTL PYLSGQFTNS 151 200 ENSP00000278612/1-1427 PSTGTQVTRP SGQISDPSRS YFVVVNHSQS QDTVTTGEAL NVIPGAQEKK ENSBTAP00000013589/1-1422 PLTATQVIRP TGQISAPLRS DFVVVNHSQS QDTMTTGEAL NNNTGAQERK ENSTTRP00000005731/1-1430 PLTATQVVRP TGQISTPLRS NFVVVSHSQS QDTMTPGEAL NIIPGPQERK bmy_11190T0/1-1444 PLTATQVIRP AGQISTPLRS NFVVVNHSQS QDTMTPGEAF NIIPGPQERK BACU004589/1-1396 PLTATQVIRP AGQISTPLRS NFVVVNHSQS QDTMTPGEAL NIIPGPQERK 201 250 ENSP00000278612/1-1427 AHASLMSPGR RKSESQRKST TLSGPHSTIR NFQDPNAFAV EKQMVIENAR ENSBTAP00000013589/1-1422 NHASLMSPGR RKSESQRK-- --SGPHSTIR NLQDPNAFVV EKQMVIENAR ENSTTRP00000005731/1-1430 THASLMSPGR RKSESQRKSI TLSGPHSTIR NFQDPNTFAV EKQMVIENAR bmy_11190T0/1-1444 THASLMSPGR RKSESQRKSI TLSGPHSTIR NFQDPNTFAV EKQMVIENAR BACU004589/1-1396 THASLMSPGR RKSESQRKSI TLSGPHSTIR NFQDPNTFAV EKQMVIENAR 251 300 ENSP00000278612/1-1427 EKILSNKSLQ EKLAENINKF LTSDNNIAQV PKQTDNNPTE PETSIDEFLG ENSBTAP00000013589/1-1422 EKILSNKSLQ EKLAENINKF LTSDNSIAQV PKQTDSNPSE PETSIDELLG ENSTTRP00000005731/1-1430 EKILSNKSLQ EKLAENINKF LTSDNNIAQV PKQTDSNPSE PETSIDELLG bmy_11190T0/1-1444 EKILSNKSLQ EKLAENINKF LTSDNNIAQV PKQTDSNPSE PETSIDELLG BACU004589/1-1396 EKILSNKSLQ EKLAENINKF LTSDNSIAQV PKQTDSNPSE PETSIDELLG 301 350 ENSP00000278612/1-1427 LPSEIHMSEE AIQDILEQTE SDPAFQALFD LFDYGKTKNN KNISQSISSQ ENSBTAP00000013589/1-1422 LQSEIHMSEE AIQDILEQTE SDPAFQALFD LFDYGKTKNN KNISQGICSQ ENSTTRP00000005731/1-1430 LQSEIHMSEE AIQDILEQTE SDPAFQALFD LFDYGKTKNN KNISQGISSQ bmy_11190T0/1-1444 LQSEIHMSEE AIQDILEQTE SDPAFQALFD LFDYGKTKNN KNISQGISSQ BACU004589/1-1396 LQSEIHMSEE AIQDILEQTE SDPAFQALFD LFDYGKTKNN KNISQGISSQ 351 400 ENSP00000278612/1-1427 PMESNPSIVL ADETNLAVKG SFETEESDGQ SGQPAFCTSY QNDDPLNALK ENSBTAP00000013589/1-1422 HMETNPSVVL AGETNLAVKG TFETEESDDP SGQPSFCTSY QNEDTSNILK ENSTTRP00000005731/1-1430 HMETNLNVVL AGETNLAVKG SFETGESDDQ SGQPPYCTSY QNEDTSNVLK bmy_11190T0/1-1444 HMETNLNVVL AGETNLAVRG SFETEVSDDQ SGQPPFCTSY QNEDTSNVLK BACU004589/1-1396 HMETNLNVVL AGETNLAVKG SFETEVSDDQ SGQPPFCTSY QNEDTSNVLK 401 450 ENSP00000278612/1-1427 NSNNHDVLRQ EDQENFSQIS TSIQKKAFKT AVPTEQKCDI DITFESVPNL ENSBTAP00000013589/1-1422 NGSNHDELRQ EAQEHFSHID SSIQKKAFKT VVSTEQKCNL DITFESVPSL ENSTTRP00000005731/1-1430 NGSNHDELRQ EAQEHFSQID SSIQKKAFKT VVSTEQKYNL DITFESVPNL bmy_11190T0/1-1444 NGSNHDELRQ EAQEQFSQID SSVQKKAFKT VVSTEQKCNL DITFESVPNL BACU004589/1-1396 NGSNRDELRQ EAQEHFSQID SSVQKKAFKT VVSTEQKCNL DITFESVPNL 451 500 ENSP00000278612/1-1427 NDFNQRGNSN AECNPHCAEL YTNQMSTETE MAIGIEKNSL SSNVPSESQL ENSBTAP00000013589/1-1422 SDFNERVNSD AECNQHCAEL YTSQMSTETE MALEVEKNSL SPNVQNESQL ENSTTRP00000005731/1-1430 NDFNQRVNSD AECNQHCAEL YTSQMSTETE LAMEVEKNSL SPSVQNESRL bmy_11190T0/1-1444 NDFNQRINSD AECNQHCAEL YTNQMSTETD LAMEVEKNSL SPSVQNESRL BACU004589/1-1396 NDFNQRINSD AECNQHCAEL YTNQMSTETD LAMEVEKNSL SPSVQNESRL 501 550 ENSP00000278612/1-1427 QPDQPDIPIT SFVSLGCEAN NENLILSGKS SQLLSQDTSL TGKPSKKSQF ENSBTAP00000013589/1-1422 QPDQSPIPIS SVVSLGGETN SENLILSGKT SQLLPQNIPL AGKASKKGQF ENSTTRP00000005731/1-1430 QPDQSDIPIT SFVSLGGETN NANLILSGKT SQLLSQNIPL TGKPSKKGQF bmy_11190T0/1-1444 QPDQSDIPIT SFVSLGGETN NENLILSGKT SQLLSQNIPL TGKPSKKGQF BACU004589/1-1396 QPDQSDIPIT SFVSLGGETN NENLILSGKT SQLLSQNIPL TGKPSKKGQF 551 600 ENSP00000278612/1-1427 CENSNDTVKL KINFHGSKSS DSSEVHKSKI EINVLEPVMS Q-LSNCQDNS ENSBTAP00000013589/1-1422 CESSDDTRRL KADFHNSKSP DSREIHQNKI EINNVLPVTS QHLRDCQDNS ENSTTRP00000005731/1-1430 CESSDDTRRL TTNFHGSKSP DSREIHQSKI EINNVLPVAS QQLSDCQDNS bmy_11190T0/1-1444 CESSDDTRRL TTNFHGSKSP DSREIYQSKI EINNVLPVAS QQLSDCQDNS BACU004589/1-1396 CESSDDTRRL TTNFHGSKSP DSREIYQSKI EINNVLPVAS QQLSDCQDNS 601 650 ENSP00000278612/1-1427 CLQSEILPVS VESSHLNVSG Q-VEIHLGDS LSSTKQPSND SASVELNHTE ENSBTAP00000013589/1-1422 SLQ--ILPAS IENSGLTVSE QKGEIHLEDS VSSIKQPSND SSSVELNHTI ENSTTRP00000005731/1-1430 SLQSKILPVS VEGSGLTISE QKVEIHLGDS VSSIKQPSND SSSVKLNHTD bmy_11190T0/1-1444 SLQSKILPVS IEGSGLTVSE QKVEIHLGDS VSSIKQPSND SSSVELNHTD BACU004589/1-1396 SLQSKILPVS LEGSGLTVSE QKVEIHLGDS VSSIKQPSND SSSVELNHTD 651 700 ENSP00000278612/1-1427 NEAQASKSE- ---NSQEPSS SVKEE-NTIF LSLGGNANCE KVALTPPEGT ENSBTAP00000013589/1-1422 HETQSSKSEK AALDSQEPSS SVKEDGDSIF LSLGEN-NCE EVTLMPSESN ENSTTRP00000005731/1-1430 HEPQPSTSEK VALGSQEPSS SVKEDGDSIF LSLGEN-NCE EVTLISPEAN bmy_11190T0/1-1444 HEPQPSKSEK VALGSQEPSS SVKEDGDSIF LSLGEN-NCE EVTLIPPEAN BACU004589/1-1396 HEPQPSKSEK VALGSQEPSS SVKEDGDSIF LSLGEN-NCE EVTLIPPEAN 701 750 ENSP00000278612/1-1427 PVENSHSLPP ESVCSSVGDS HPESQNTDDK PSSNNSAEID ASNIVSLKVI ENSBTAP00000013589/1-1422 PIEDRHSLPS ESVCSSMRES HPESQNTNNK PANDKSTEID ASNIVSLKII ENSTTRP00000005731/1-1430 PIEDIRSLPS ESVCSSMRDS HPESQNTSDK PAGNKSAEID ASNIVSLKII bmy_11190T0/1-1444 PIEDIHSLPS ESVCSSMRDS HPESQNTSDK PAGNKSTEID ASNIVSLKII BACU004589/1-1396 PIEDIHSLPS ESVCSSMRDS HPESQNTSDK PAGNKSTEID ASNIVSLKII 751 800 ENSP00000278612/1-1427 ISDDPFVSSD TELTSAVSSI NGENLPTIIL SSPTKSPTKN AELVKCLSSE ENSBTAP00000013589/1-1422 ISDDPFVSSD TELNSAVSSI SGENLPTIIL SSPAKSPARN AELVKCLSSE ENSTTRP00000005731/1-1430 ISDDPFVSSD SELNSAVSSI SGENLPTIIL SSPSKSPARN AELVKCLSSE bmy_11190T0/1-1444 ISDDPFVSSD SELNSAVSSI SGENLPTIIL SSPAKSPARN AEVVKCLSSE BACU004589/1-1396 ISDDPFVSSD SELNSAVSSI SGENLPTIIL SSPAKSPARN AEVVKCLSSE 801 850 ENSP00000278612/1-1427 ETVGAVVYAE -VGDSASMEQ SLLTFKSEDS AVNNTQNEDG IAFSANVTPC ENSBTAP00000013589/1-1422 ETTGAISSAE GTGDSASMEQ SLLALKPEDS KVNNMQNEDS IALSTNVTPC ENSTTRP00000005731/1-1430 ETTDAISSAE GIGDSASMEQ SLLALKPEDS TVNNAQNEES IAFSANVTPC bmy_11190T0/1-1444 ETTGAVSSAE GIGDSASMEQ SLLAFKPEDS TINNTQNEDS IAFSANVTPC BACU004589/1-1396 ETTGAVSSAE GIGDSASMEQ SLLTFKPEDS TVNNTQNEDS IAFSANVTPC 851 900 ENSP00000278612/1-1427 VSKDGGYIQL MPATSTAFGN SNNILIATCV TDPTALGTSV SQSNVVVLPG ENSBTAP00000013589/1-1422 VSKDGGYIQL MPATSTTFGN SSNILIATCV TDPTALGTTV SQSNVVVLPG ENSTTRP00000005731/1-1430 VSKDGGYIQL MPATSTTFGN SNNILIATCV TDPTALGTTV SQSNVVVLPG bmy_11190T0/1-1444 VSKDGGYIQL MPATSTTFGN SNNILIATCV TDPTALGATV SQSNVVVLPG BACU004589/1-1396 VSKDGGYIQL MPATSTTFGN SNNILIATCV TDPTALGTTV SQSNVVVLPG 901 950 ENSP00000278612/1-1427 NSAPMTAQPL PPQLQTPPRS NSVFAVNQAV SPNFSQGSAI IIASPVQPVL ENSBTAP00000013589/1-1422 NSAPMTAQPP LSQLQTPPRS NSVFAVNQAV SPNFSQGSAI IIASPVQPVL ENSTTRP00000005731/1-1430 NSAPVTAQP- PPQLQTPPRS NSVFAVNQAM SPSFSQGSAI IIASPVQPVL bmy_11190T0/1-1444 NSAPMTAQP- PPQLQTPPRS NSVFAVNQAM SPNFSQGSAI IIASPVQPVL BACU004589/1-1396 NSAPMTAQP- PPQLQTPPRS NSVFAVNQAM SPNFSQGSAI IIASPVQPVL 951 1000 ENSP00000278612/1-1427 QGMVGMIPVS VVGQNGNNFS TPPRQVLHMP LTAPVCNRSI PQFPVPPKSQ ENSBTAP00000013589/1-1422 QGMVGMIPVS VVGQNGNTFS APPRQVLHMP LAAPVCNRSI SQFPIPQKSL ENSTTRP00000005731/1-1430 QGMVGMIPVS VVGQNGNTFS APPRQVLHMP LAAPVCNRSI PQFPIPPKSL bmy_11190T0/1-1444 QGMVGMIPVS VVGQNGNTFS APPRQVLHMP LAAPVCNRSI PQFPIPPKSL BACU004589/1-1396 QGMVGMIPVS VVGQNGNTFS APPRQVLHMP LAAPVCNRSI SQFPIPPKSL 1001 1050 ENSP00000278612/1-1427 KAQGLRNKPC IGKQVNNLVD SSGHSVGCHA QKTEVSDKSI ATDLGKKSEE ENSBTAP00000013589/1-1422 KSQGLKNKPC TGKQVNNLVD SSSHSVGCHA QRTEVSDKIM ATDLGKKLEE ENSTTRP00000005731/1-1430 KTQGLRNKPC TGKQVNNLVD SSSHLVGCHV QRTEVPDKNM ATDLGKKLEE bmy_11190T0/1-1444 KTQGLRNKPC TGKQVNNLVD SSSHLVGCHV QRTEVPDKNM ATDLGKKLEE BACU004589/1-1396 KTQGLRNKPC TGKQVNNLVD SSSHLVGCHV QRTEVPDKNM ATDLGKKLEE 1051 1100 ENSP00000278612/1-1427 TTVPFPEESI VPAAKP--CH RRVLCFDSTT APVANTQGPN HKMVSQNKER ENSBTAP00000013589/1-1422 TTVPFSVEST VPVSKPFESH RRVLCFDTTA SPVANTQGTN QKLVSQSKER ENSTTRP00000005731/1-1430 ITVPFSVESI VPTAKP--CH RRVLCFDSTA SPVANTQGTN HKTVSQNKER bmy_11190T0/1-1444 ITVPLSVESI VPTSKTFESH RRVLCFDSTA SPVANTQGTN HKTVSQNKER BACU004589/1-1396 ITVPFSVESI VPTSKTFESH RRVLCFDSTA SPVANTQGTN HKTVSQNKER 1101 1150 ENSP00000278612/1-1427 NAVSFPNLDS PNVSSTLKPP SNNAIKREKE KPPLPKILSK SESAISRHTT ENSBTAP00000013589/1-1422 NDISFSNLDS PIVSSTLKPP ANNAVRRERE KPSMPKILSK SETPIGRHAT ENSTTRP00000005731/1-1430 NDISFSNLDS PIVSSTLKPP SNNALKRERE KPPVPKILSK SETAISRH-T bmy_11190T0/1-1444 NDISFSNLDS PIVSSTLKPP SNNALKRERE KPPVPKILSK SETAISRH-T BACU004589/1-1396 NDISFSNLDS PIVSSTLKPP SNNALKRERE KPPVPKILSK SETAISRH-T 1151 1200 ENSP00000278612/1-1427 IRETQSEKKV SPTEIVLESF HKATANKENE LCSDVERQKN PENSKLSIGQ ENSBTAP00000013589/1-1422 IKETPSEKKV SPTETILESF HKATANKENE LCSDVERQKN PETSKLSNGQ ENSTTRP00000005731/1-1430 IKETQSEKKV -PTETVLESS HKATANKENE LCSDVERQKN PETSKLSNGQ bmy_11190T0/1-1444 IKETQSEKKV SXTETILESF HKTTANKENE LCSDVERQKN PETSKLSNGQ BACU004589/1-1396 IKETQSEKKV SPTETILESF HKTTANKENE LCSDVERQKN PETSKLSNGQ 1201 1250 ENSP00000278612/1-1427 QNGGLRSEKS IASLQEMTKK QGTSSNNKNV LSVGTAVKDL KQEQTKSASS ENSBTAP00000013589/1-1422 QNGGVRNEKT VTSLQELTRK QGTSSNSKNV FSVGAPVKDL KQDQTRSASS ENSTTRP00000005731/1-1430 QTGGVRNEKT IASLQELTRK QGTSSNSKNV ISVGAPVKDL KQEQTKSASS bmy_11190T0/1-1444 QNAGVRNEKT VVSLQELTRK QGTSSNSKNV ISVGAPVKDL KQEQTKSASS BACU004589/1-1396 QSGGVRNEKT VASLQELTRK QGTSSNSKNV ISVGAPVKDL KQEQTKSASS 1251 1300 ENSP00000278612/1-1427 LI------TT EMLQDIQRHS SVSRLADSSD LPVPRTPGSG AGEKHKEEPI ENSBTAP00000013589/1-1422 LINPLTKHTT EMLQDTQWHS PVNRLTDSTD LSVPRTSSSG AGEKLKEEPT ENSTTRP00000005731/1-1430 LI------TT EMLQDIQWHS PVNRLADSTD LSVPRTSGSG AGEKHKEEPT bmy_11190T0/1-1444 LINPLTKHTT EMLQDIQWHS PVSRLADSTD LSVPRTSGSG AGEKHKEEPT BACU004589/1-1396 LINPLTKHTT EMLQDIQWHS PVSRLADSTD LSVPRTSGSG AGEKHKEEPT 1301 1350 ENSP00000278612/1-1427 DIIKAPSSRR FSEDSSTSKV MVPPVTPDLP ACSPASETGS ENSVNMAAHT ENSBTAP00000013589/1-1422 DGIKVPSSRR FGED-STPKV MVPPVTPDLP ACSPASETGS ENSVNMAAHT ENSTTRP00000005731/1-1430 DVIKVPSSRR YGEESSTPKV MVPPVTPDLP ACSPASETGS ENSVNMAAHT bmy_11190T0/1-1444 DVIKVPSSRR YGEDSSTAKV MVPPVTPDLP ACSPASETGS ENSVNMAAHT BACU004589/1-1396 DVIKVPSSRR YGEDSSTPKV MVPPVTPDLP ACSPASETGS ENSVNMAAHT 1351 1400 ENSP00000278612/1-1427 LMILSRAAIS RTTSATPLKD NTQQFRASSR STTKKRKIEE LDERERNSRP ENSBTAP00000013589/1-1422 LMILSRAAIS RTTSSTPLKD NTQQFRASSR STTKKRKIEE VDEHERNSRT ENSTTRP00000005731/1-1430 LMILSRAAIS RTTSATPLKD NTQQFRASSR STTKKRKIEE LDERERHSRT bmy_11190T0/1-1444 LMILSRAAIS RTTSTTPLKD NTQQFRASSR STTKKRKIEE LDERERHSRT BACU004589/1-1396 LMILSRAAIS RTTSATPLKD NTQQFRASSR STTKKRKIEE LDERERHSRT 1401 1450 ENSP00000278612/1-1427 SSKNLTNSSI PMKKKKIK-- ------KKKL PSSFPAGMDV DKFLLSLHYD ENSBTAP00000013589/1-1422 SNKGLANSSM PMKKKKIK-- ------KKKL PSSFPAGMDV DKFLLSLHYD ENSTTRP00000005731/1-1430 SNKSLANSSI PMKKKKIK-- ------KKKL PSSFPAGMDV DKFLLSLHYD bmy_11190T0/1-1444 SNKSLANSSI PMKKKKIKAS LK----KKKL PSSFPAGMDV DKFLLSLHYD BACU004589/1-1396 SNKSLANSSI PMKKKKIKAS LKVLISKPHL ALPSVLRLKI SSFFAIAT-- 1451 1500 ENSP00000278612/1-1427 E ENSBTAP00000013589/1-1422 E ENSTTRP00000005731/1-1430 E bmy_11190T0/1-1444 E BACU004589/1-1396 -