KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:48 2014 Check: 00 .. Name: ENSP00000318016/1-1159 Len: 1165 Check: 8679 Weight: 1.00 Name: ENSBTAP00000013591/1-1164 Len: 1165 Check: 4852 Weight: 1.00 Name: ENSTTRP00000014699/1-1164 Len: 1165 Check: 560 Weight: 1.00 Name: bmy_07434T0/1-1029 Len: 1165 Check: 5451 Weight: 1.00 Name: BACU013235/1-1094 Len: 1165 Check: 9888 Weight: 1.00 // 1 50 ENSP00000318016/1-1159 -----MLDFL AENNLCGQAI LRIVSCGNAI IAELLRLSEF IPAVFRLKDR ENSBTAP00000013591/1-1164 -IFLKMVDFL AENNLCGQAI LRIVSCGNAI IAELLRLSEF IPPVFRLKDR ENSTTRP00000014699/1-1164 LIILTMLDFL AENNLCGQAI LRIVSCGNAI IAELLRLSEF IPAVFRLKDR bmy_07434T0/1-1029 -----MLDFL AENNLCGQAI LRIVSCGNAI IAELLRLSEF IPAVFRLKDR BACU013235/1-1094 -----MLDFL AENNLCGQAI LRIVSCGNAI IAELLRLSEF IPAVFRLKNR 51 100 ENSP00000318016/1-1159 ADQQKYGDII FDFSYFKGPE LWESKLDAKP ELQDLDEEFR ENNIEIVTRF ENSBTAP00000013591/1-1164 ADQQKYGDII FDFSYFKGPE LCESKLESKP ELQDLDEEFR ENNIEIVTRF ENSTTRP00000014699/1-1164 ADQQKYGDII FDFSYFKGPE LWESKLEAKP ELQDLDEEFR ENNTEIVTRF bmy_07434T0/1-1029 ADQQKYGDII FDFSYFKGPE LWESKLEAKP ELQDLDEEFR ENNTEIVTRF BACU013235/1-1094 ADQQKYGDII FDFSYFKGPE LWESKLEAKP ELQDLDEEFR ENNTEIVTRF 101 150 ENSP00000318016/1-1159 YLAFQSVHKY IVDLNRYLDD LNEGVYIQQT LETVLLNEDG KQLLCEALYL ENSBTAP00000013591/1-1164 YLAFQSVHKY IVDLNRYLDD LNEGVYIQQT LETVLLNEDG KQLLCEALYL ENSTTRP00000014699/1-1164 YLAFQSVHKY IVDLNRYLDD LNEGVYIQQT LETVLLNEDG KQLLCEALYL bmy_07434T0/1-1029 YLAFQSVHKY IVDLNRYLDD LNEGVYIQQT LETVLLNEDG KQLLCEALYL BACU013235/1-1094 YLAFQSVHKY IVDLNRYLDD LNEGVYIQQT LETVLLNEDG KQLLCEALYL 151 200 ENSP00000318016/1-1159 YGVMLLVIDQ KIEGEVRERM LVSYYRYSAA RSSADSNMDD ICKLLRSTGY ENSBTAP00000013591/1-1164 YGVMLLVIDQ KIEGETRERM LVSYYRYSAA RSSADSNMDD ICKLLRSTGY ENSTTRP00000014699/1-1164 YGVMLLVIDQ KIEGEIRERM LVSYYRYSAA RSSADSNMDD ICKLLRSTRY bmy_07434T0/1-1029 YGVMLLVIDQ KIEGEIRERM LVSYYRYSAA RSSADSNMDD ICKLLRSTGY BACU013235/1-1094 YGVMLLVIDQ KIEGEIRERM LVSYYRYSAA RSSADSNMDD ICKLLRSTGY 201 250 ENSP00000318016/1-1159 SSQPGAKRPS NYPESYFQRV PINESFISMV IGRLRSDDIY NQVSAYPLPE ENSBTAP00000013591/1-1164 SSQPGAKRPP NYPESYFQRV PINETFISMV IGRLRSDDIY NQVSAYPLPE ENSTTRP00000014699/1-1164 SSQPGAKRPP NYPESYFQRV PINETFISMV IGRLRSDDIY NQVSAYPLPE bmy_07434T0/1-1029 SSQPGAKRPP SYPESYFQRV PINETFISMV IGRLRSDDIY NQ-------- BACU013235/1-1094 SSQPGAKRPP NYPESYFQRV PINETFISMV IGRLRSDDIY NQ-------- 251 300 ENSP00000318016/1-1159 HRSTALANQA AMLYVILYFE PSILHTHQAK MREIVDKYFP DNWVISIYMG ENSBTAP00000013591/1-1164 HRSTALANQA AMLYVILYFE PSILHTHQAK MREIVDKYFP DNWVISIYMG ENSTTRP00000014699/1-1164 HRSTALANQA AMLYVILYFE PSILHTHQAK MREIVDKYFP DNWVISIYMG bmy_07434T0/1-1029 ---------- ---------- ---------- ---------- ---VISIYMG BACU013235/1-1094 ---------- ---------- ---------- ---------- ---VISIYMG 301 350 ENSP00000318016/1-1159 ITVNLVDAWE PYKAAKTALN NTLDLSNVRE QASRYATVSE RVHAQVQQFL ENSBTAP00000013591/1-1164 ITVNLADAWE PYKAAKTALN NTLDLSNVRE QASRYATVSE RVHAQVQQFL ENSTTRP00000014699/1-1164 ITVNLADAWE PYKAAKTALN NTLDLSNVRE QASRYATVSE RAHAQAQQFL bmy_07434T0/1-1029 ITVNLADAWE PYKAAKTALN NTLDLSNVRE QASRYATVSE RAHAQAQQFL BACU013235/1-1094 ITVNLADAWE PYKAAKTALN NTLDLSNVRE QASRYATVSE RAHAQAQQFL 351 400 ENSP00000318016/1-1159 KEGYLREEMV LDNIPKLLNC LRDCNVAIRW LMLHTADSAC DPNNKRLRQI ENSBTAP00000013591/1-1164 KEGYLREELV LDNIPRLLNC LRDGNVAIRW LMLHTADSAC DPNNKRLRQI ENSTTRP00000014699/1-1164 KEGCLREDLV LDNIPRLLNC LRDCNVTIRW LMLHTADSAC DPNNKRLRQI bmy_07434T0/1-1029 KEGCLREDLV LDNIPRLLNC LRDCNVTIRW LMLHTADSAC DPNNKRLRQI BACU013235/1-1094 KEGCLREDLV LDNIPRLLNC LRDCNVTIRW LMLHTADSAC DPNNKRLRQI 401 450 ENSP00000318016/1-1159 KDQILTDSRY NPRILFQLLL DTAQFEFILK EMFKQMLSEK QTKWEHYKKE ENSBTAP00000013591/1-1164 KDQILTDLRY NPKILFQLLL DTAQFEFILK EMFKQMLSEK QAKWEHHKKE ENSTTRP00000014699/1-1164 KDQILTDSRY NPKILFQLLL DTAQFEFILK EMFKQMLSEK QAKWEHYKKE bmy_07434T0/1-1029 KDQILTDSRY NPKILFQLLL DTAQFEFILK EMFKQMLSEK QAKWEYYKKE BACU013235/1-1094 KDQILTDSRY NPKILFQLLL DTAQFEFILK EMFKQMLSEK QAKWEYYKKE 451 500 ENSP00000318016/1-1159 GSERMTELAD VFSGVKPLTR VEKNENLQAW FREISKQILS LNYDDSTAAG ENSBTAP00000013591/1-1164 GSERMTELAD VFSGVKPLTR VEKNENLQAW FREISKQILS LNYDDSTAAG ENSTTRP00000014699/1-1164 GSERMTELAD VFSGVKPLTR VEKNENLQAW FREISKQILS LNYDDSTAAG bmy_07434T0/1-1029 GSERMTELAD VFSGVKPLTR VEKNENLQAW FREISKQILS LNYDDSTAAG BACU013235/1-1094 GSERMTELAD VFSGVKPLTR VEKNENLQAW FREISKQILS LNYDDSTAAG 501 550 ENSP00000318016/1-1159 RKTVQLIQAL EEVQEFHQLE SNLQVCQFLA DTRKFLHQMI RTINIKEEVL ENSBTAP00000013591/1-1164 RKTVQLIQAL EEVQEFHQLE SNLQVCQFLA DTRKFLHQMI RTINIKEEVL ENSTTRP00000014699/1-1164 RKTVQLIQAL EEVQEFHQLE SNLQVCQFLA DTRKFLHQMI RTINIKEEVL bmy_07434T0/1-1029 RKTVQLIQAL EEVQEFHQLE SNLQVCQFLA DTRKFLHQMI RTINIKEEVL BACU013235/1-1094 RKTVQLIQAL EEVQEFHQLE SNLQVCQFLA DTRKFLHQMI RTINIKEEVL 551 600 ENSP00000318016/1-1159 ITMQIVGDLS FAWQLIDSFT SIMQESIRVN PSMVTKLRAT FLKLASALDL ENSBTAP00000013591/1-1164 ITMQIIGDLS FAWQLIDSFT SIMQESIRVN PSMVTKLRAT FLKLASALDL ENSTTRP00000014699/1-1164 ITMQIVGDLS FAWQLIDSFT SIMQESIRVN PSMVTKLRAT FLKLASALDL bmy_07434T0/1-1029 ITMQIVGDLS FAWQLIDSFT SIMQESIRVN PSMVTKLRAT FL-------- BACU013235/1-1094 ITMQIVGDLS FAWQLIDSFT SIMQESIRVN PSMVTKLRAT FLKLASALDL 601 650 ENSP00000318016/1-1159 PLLRINQANS PDLLSVSQYY SGELVSYVRK VLQIIPESMF TSLLKIIKLQ ENSBTAP00000013591/1-1164 PLLRINQANS PDLLSVSQYY SGELVSYVRK VLQIIPESMF TSLLKIIKLQ ENSTTRP00000014699/1-1164 PLLRINQANS PDLLSVSQYY SGELVSYVRK VLQIIPESMF TSLLKIIKLQ bmy_07434T0/1-1029 ---------- ---------- ---------K VLQIIPESMF TSLLKIIKLQ BACU013235/1-1094 PLLRINQANS PDLLSVSQYY SGELVSYVRK VLQIIPESMF TSLLKIIKLQ 651 700 ENSP00000318016/1-1159 THDIIEVPTR LDKDKLRDYA QLGPRYE-VA KLTHAISIFT EGILMMKTTL ENSBTAP00000013591/1-1164 THDIIEVPTR LDKDKLRDYA QLGPRYEVVA KLTHAISIFT EGILMMKTTL ENSTTRP00000014699/1-1164 THDIIEVPTR LDKDKLRDYA QLGPRYE-VA KLTHAISIFT EGILMMKTTL bmy_07434T0/1-1029 THDIIEVPTR LDKDKLRDYA QLGPRYE-VA KLTHAISIFT EGILMMKTTL BACU013235/1-1094 THDIIEVPTR LDKDKLRDYA QLGPRYE-VA KLTHAISIFT EGILMMKTTL 701 750 ENSP00000318016/1-1159 VGIIKVDPKQ LLEDGIRKEL VKRVAFALHR GLIFNPRAKP SELMPKLKEL ENSBTAP00000013591/1-1164 VGIIKVDPKQ LLEDGIRKEL VKRVAFALHR GLIFNPRAKP SELMPKLKEL ENSTTRP00000014699/1-1164 VGIIKVDPKQ LLEDGIRKEL VKRVAFALHR GLIFNPRAKP SELMPKLKEL bmy_07434T0/1-1029 VGIIEVDPKQ LLEDGIRKEL VKRVAFALHR GLIFNPRAKP SELMPKLKEL BACU013235/1-1094 VGIIKVDPKQ LLEDGIRKEL VKRVAFALHR GLIFNPRAKP SELMPKLKEL 751 800 ENSP00000318016/1-1159 GATMDGFHRS FEYIQDYVNI YGLKIWQEEV SRIINYNVEQ ECNNFLRTKI ENSBTAP00000013591/1-1164 GATMDGFHRS FEYIQDYVNI YGLKIWQEEV SRIINYNVEQ ECNNFLRTKI ENSTTRP00000014699/1-1164 GATMDGFHRS FEYIQDYVNI YGLKIWQEEV SRIINYNVEQ ECNNFLRTKI bmy_07434T0/1-1029 GATMDGFHRS FEYIQDYVNI YGLKIWQEEV SRIINYNVEQ ECNNFLRTKI BACU013235/1-1094 GATMDGFHRS FEYIQDYVNI YGLKIWQEEV SRIINYNVEQ ECNNFLRTKI 801 850 ENSP00000318016/1-1159 QDWQSMYQST HIPIPKFTPV DESVTFIGRL CREILRITDP KMTCHIDQLN ENSBTAP00000013591/1-1164 QDWQSMYQST HIPIPKFTPV DESVTFIGRL CREILRITDP KMTCHIDQLN ENSTTRP00000014699/1-1164 QDWQSMYQST HIPIPKFTPV DESVTFIGRL CREILRITDP KMTCHIDQLN bmy_07434T0/1-1029 QDWQSMYQST HIPIPKFTPV DESVTFIGRL CREILRITDP KMTCHIDQLN BACU013235/1-1094 QDWQSMYQST HIPIPKFTPV DESVTFIGRL CREILRITDP KTTCHIDQLN 851 900 ENSP00000318016/1-1159 TWYDMKTHQE VTSSRLFSEI QTTLGTFGLN GLDRLLCFMI VKELQNFLSM ENSBTAP00000013591/1-1164 TWYDMKTHQE VTSSRLFSEI QNTLGTFGLN GLDRLLCFMI VKELQNFLSM ENSTTRP00000014699/1-1164 TWYDMKTHQE VTSSRLFSEI QNTLGTFGLN GLDRLLCFMI VKELQNFLSM bmy_07434T0/1-1029 TWYDMKTHQE VTSSRLFSEI QNTLGTFGLN GLDRLLCFMI VKELQNFLSM BACU013235/1-1094 TWYDMKTHQE VTSSRLFSEI QNTLGTFGLN GLDRLLCFMI VKELQNFLSM 901 950 ENSP00000318016/1-1159 FQKIILRDRT VQDTLKTLMN AVSPLKSIVA NSNKIYFSAI AKTQKIWTAY ENSBTAP00000013591/1-1164 FQKIILRDRT VQETLKTLMN AVSPLKSIVA NSNKIYFSAI AKTQKIWTAY ENSTTRP00000014699/1-1164 FQKIILRDRT VQDTLKTLMN AISPLKSIVA NSNKIYFSAI AKTQKIWTAY bmy_07434T0/1-1029 FQKIILRDRT VQDTLKTLMN AISPLKSIVA NSNKIYFSAI AKTQKIWTAY BACU013235/1-1094 FQKIILRDRT VQDTLKTLMN ALSPLKSIVA NSNKIYFSAI AKTQKIWTAY 951 1000 ENSP00000318016/1-1159 LEAIMKVGQM QILRQQIANE LNYSCRFDSK HLAAALENLN KALLADIEAH ENSBTAP00000013591/1-1164 LEAIMKVGQM QILRQQIANE LNYSCRFDSK HLAAALENLN KALLADIEAH ENSTTRP00000014699/1-1164 LEAIMKVGQM QILRQQIANE LNYSCRFDSK HLAAALENLN KALLADIEAH bmy_07434T0/1-1029 LEAIMKVGQM QILRQQIANE LNYSCRFDSK HLAAALENLN KALLADIEAH BACU013235/1-1094 LEAIMKVGQM QILRQQIANE LNYSCRFDSK HLAAALENLN KALLADIEAH 1001 1050 ENSP00000318016/1-1159 YQDPSLPYPK EDNTLLYEIT AYLEAAGIHN PLNKIYITTK RLPYFPIVNF ENSBTAP00000013591/1-1164 YQDPSLPYPK EDNTLLYEIT AYLEAAGIHN PLNKIYITTK RLPYFPVVNF ENSTTRP00000014699/1-1164 YQDPSLPYPK EDNTLLYEIT AYLEAAGIHN PLNKIYITTK RLPYFPVVNF bmy_07434T0/1-1029 YQDPSLPYPK EDNTLLYEIT AYLEAAGIHN PLNKIYITTK RLPYFPVVNF BACU013235/1-1094 YQDPSLPYPK EDNTLLYEIT AYLEAAGIHN PLNKIYITTK RLPYFPVVNF 1051 1100 ENSP00000318016/1-1159 LFLIAQLPKL QYNKNLGMVC RKPTDPVDWP PLVLGLLTLL KQFHSRYTEQ ENSBTAP00000013591/1-1164 LFLIAQLPKL QYNKNLGMVC RKPADPVDWP PLVLGLLTLL KQFHSRYTEQ ENSTTRP00000014699/1-1164 LFLIAQLPKL QYSKNLGMVC RKPADPVDWP PLVLGLLTLL KQFHSRYTEQ bmy_07434T0/1-1029 LFLIAQLPKL QYNKNLGMVC RKPADPVDWP PLVLGLLTLL KQFHSRYTEQ BACU013235/1-1094 LFLIAQLPKL QYNKNLGMVC RKPADPVDWP PLVLGLLTLL KQFHSRYTEQ 1101 1150 ENSP00000318016/1-1159 FLALIGQFIC STVEQCTSQK IPEIPADVVG ALLFLEDYVR YTKLPRRVAE ENSBTAP00000013591/1-1164 FLALIGQFIR STVEQCVSQK IPEMPADVVG ALLFLEDYVR YTKLPRRVAE ENSTTRP00000014699/1-1164 FLALIGQFIR STVEQCTSQK IPEMPADVVG ALLFLEDYVR YTKLPRRVAE bmy_07434T0/1-1029 FLALIGQFIR STVEQCTR-- ---------- ---------- ---------- BACU013235/1-1094 FLALIGQFIR STVEQCTSQK IPEMPADVVG ALLFLEDYVR YTKLPRRVSS 1151 1200 ENSP00000318016/1-1159 AHVPNFIFDE FRTVL ENSBTAP00000013591/1-1164 AHVPNFIFDE FRTVL ENSTTRP00000014699/1-1164 AHVPNFIFDE FRTVL bmy_07434T0/1-1029 ---------- FKLIM BACU013235/1-1094 R--------- -----