KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:50:52 2014 Check: 00 .. Name: ENSP00000330601/1-782 Len: 796 Check: 2895 Weight: 1.00 Name: ENSBTAP00000013614/1-786 Len: 796 Check: 9281 Weight: 1.00 Name: BACU007694/1-649 Len: 796 Check: 9613 Weight: 1.00 Name: bmy_02546T0/1-732 Len: 796 Check: 3220 Weight: 1.00 Name: ENSTTRP00000016098/1-561 Len: 796 Check: 8415 Weight: 1.00 // 1 50 ENSP00000330601/1-782 MARARAGA-- -------LLA LWVLGAAAH- ----PQCLDF RPPFRPTQPL ENSBTAP00000013614/1-786 MAGRRAGAGA GAGTLLALLV LRALGAAAH- ----PQCLDF RPPFRPPQPL BACU007694/1-649 ---------- ---------- ---------- ----MXXXXX XXXXXPSTPL bmy_02546T0/1-732 ---------- ------MLGP AWVQSRGSET PRNTPGSWGP RPPFRPPQPL ENSTTRP00000016098/1-561 ---------- ---------- ----GAAAH- ----PQCLDF RPPFRPPQPL 51 100 ENSP00000330601/1-782 RLCAQYSDFG CCDEGRDAEL TRRFWALASR VDAAEWAACA GYARDLLCQE ENSBTAP00000013614/1-786 RFCSQYSAFG CCTPEQDAAL ARRFGAVAAR VDAAMWAECA GYALDLLCQE BACU007694/1-649 R--------- ---------- ---------- ---------- ---------- bmy_02546T0/1-732 RFCAQYSAFG CCAPEHDAAL ARRFGALAAR VDAAIWAECA GYALDLLC-- ENSTTRP00000016098/1-561 RFCAQYSAFG CCAPEHDAAL ARRFGALAAR VDAAIWAECA GYALDLLCQE 101 150 ENSP00000330601/1-782 CSPYAAHLYD AEDPFTPLRT VPGLCQDYCL DMWHKCRGLF RHLSTDQELW ENSBTAP00000013614/1-786 CSPYVAHLYD AEDPSTPLRT VPGLCEDYCL DMWQTCRGLF RHLSPDRELW BACU007694/1-649 ---------- ---------T VPGLCEDYCL DLWRSCRGLF RHLSPDRELW bmy_02546T0/1-732 ---------- ---------- ---------- ---QSCRGLF RHLSADRELW ENSTTRP00000016098/1-561 CSPYAAHLYD AEDPSTPLRT VPGLCEDYCL DLWQSCRGLF RHLSPDRELW 151 200 ENSP00000330601/1-782 ALEGNLARFC RYLSLDDTDY CFPYLLVNKN LNSNLGHVVA DAKGCLQLCL ENSBTAP00000013614/1-786 ALEGNRAKLC RSLSLDDTDY CFPRLLVNEN LNSNLGRVVA DAEGCLQLCL BACU007694/1-649 TLEGNRAKFC RYLSLDDTDY CFPRLLVNEN LNANLGRVVA DAMGCLQLCL bmy_02546T0/1-732 TLEGNRAKFC RYLSLDDTDY CFPRLLVNEN LNSNLGRVVA DAMGCLQLCL ENSTTRP00000016098/1-561 TLEGNRAKFC RYLSLDDTDY CFPHLLVNEN LNSNLGRVVA DAMGCLQLCL 201 250 ENSP00000330601/1-782 EEVANGLRNP VAMVHARDGT HRFFVAEQVG LVWAYLPDRS RLGKPFLNIS ENSBTAP00000013614/1-786 EEVANGLRNP VAMVHARDGT HRFFVAEQLG LVWVYLPDRS RLEKPFLNIS BACU007694/1-649 EEVANGLRNP VAMVHARDGS HRFFVAEQLG LVWVYLPDRS RLEKPFLNIS bmy_02546T0/1-732 EEVANGLRNP VAMVHARDGS HRFFVAEQLG LVWVYLPDRS RLEKPFLNIS ENSTTRP00000016098/1-561 EEVANGLRNP VAMVHAQDGS HRFFVAEQLG LVWVYLPDRS RLEKPFLNIS 251 300 ENSP00000330601/1-782 RVVLTSPWEG DERGFLGIAF HPSFQHNRRL YVYYSVGIRS SEWIRISEFR ENSBTAP00000013614/1-786 RAVLTSPWEG DERGFLGLAF HPSFRHNGKL YVYYSVGVGF DEWIRISEFR BACU007694/1-649 RAVLTSPWEG DERGFLGLAF HPGFRHNGKL YVYYSVGVGF HEWIRISEFR bmy_02546T0/1-732 RAVLTSPWEG DERGFLGLAF HPGFRHNGKL YVYYSVGVGF HEWIRISEFR ENSTTRP00000016098/1-561 RAVLTSPWEG DERGFLGLAF HPRFRHNGKL YVYYSVGVGF HEWIRISEFR 301 350 ENSP00000330601/1-782 VSEDDENAVD HSSERIILEV KEPASNHNGG QLLFGDDGYL YIFTGDGGMA ENSBTAP00000013614/1-786 VSEDDVNAVD HDSERIILEI EEPASNHNGG QLLFGDDGYL YIFTGDGGMA BACU007694/1-649 VSEDDVNAVD HDSERIILEI EEPASNHNGG QLLFGDDGYL YIFTGDGGMA bmy_02546T0/1-732 VSEDDVNAVD HDSERIILEI EEPASNHNGG QLLFGDDGYL YIFTGDGGMA ENSTTRP00000016098/1-561 VSEDDMNAVD HDSERIILEI EEPASNHNGG QLLFGDDGYL YIFTGDGGMA 351 400 ENSP00000330601/1-782 GDPFGTFGNA QNKSALLGKV LRIDVDRKER GLPYGIPPDN PFVGDPAAQP ENSBTAP00000013614/1-786 GDPFGKFGNA QNKSALLGKV LRIDVDRNER GPLYRIPPDN PFVGDPAARP BACU007694/1-649 GDPFGKFGNA QNKSALLGKV LRIDVDRNER GPLYRIPSDN PFVGDPAARP bmy_02546T0/1-732 GDPFGKFGNA QNKSALLGKV LRIDVDRNER GPLYRIPSDN PFVGDPAARP ENSTTRP00000016098/1-561 GDPFGKFGNA QNKSALLGKV LRIDVNRNER GPLYRIPSDN PFVGDPAARP 401 450 ENSP00000330601/1-782 EVYALGVRNM WRCSFDRGDP SSGTGRGRLF CGDVGQNKFE EVDVVERGGN ENSBTAP00000013614/1-786 EVYAFGVRNM WRCSFDRGDP ATGAGRGRLF CGDVGQNKFE EVDLVERGRN BACU007694/1-649 EVYALGVRNM WRCSFDRGDP ASGAGRGRLF CGDVGQNKFE EVDLVERGRN bmy_02546T0/1-732 EVYALGVRNM WRCSFDRGDP ASGAGRGRLF CGDVGQNKFE EVDLVERGRN ENSTTRP00000016098/1-561 EVYALGVRNM WRCSFDRGDP ASGAGRGRLF CGDVGQNKFE EVDLVERGRN 451 500 ENSP00000330601/1-782 YGWRAREGFE CYDRSLCANT SLNDLLPIFA YPHTVGKSVT GGYVYRGCEY ENSBTAP00000013614/1-786 YGWRAREGYQ CYDRKLCANA SLDDVLPIFA YPHKLGKSVT GGYVYRGCEY BACU007694/1-649 YGWRAREGFE CYDRKLCANT SLDDVLPIFA YPHKLGKSVT GGYVYRGCEY bmy_02546T0/1-732 YGWRAREGFE CYDRKLCANT SLDDVLPIFA YPHKLGKSVT GGYVYRGCEY ENSTTRP00000016098/1-561 YGWRAREGFE CYDRKLCANT SLDDVLPIFA YPHKLGKSVT GGYVYRGCEY 501 550 ENSP00000330601/1-782 PNLNGLYIFG DFMSGRLMSL QENPGTGQWQ YSEICMGHGQ TCEFPGLINN ENSBTAP00000013614/1-786 PNLNGLYVFG DFMSGRLMSL RENPETGQWR YSEICMGRGQ TCAFPGLINN BACU007694/1-649 PNLNGLYIFG DFMSGRLMSL RENLGTGQWR YNEICMGRGQ TCAFPGLINN bmy_02546T0/1-732 PNLNGLYIFG DFMSGRLMSL RENLGTGQWR YNEICMGRGQ TCEFPGLINN ENSTTRP00000016098/1-561 PNLNGLYIFG DFMSGRLMSL RENLGTGQWR YNEICMGRGQ TCAFPGLINN 551 600 ENSP00000330601/1-782 YYPYIISFGE DEAGELYFMS TGEPSATAPR GVVYKIIDAS RRAPPGKCQI ENSBTAP00000013614/1-786 YYPHIISFGE DEAGELYFMS TGMPSATVAH GVVYKMIDPS RRAPPGKCQI BACU007694/1-649 YYPHIISFAE DEAGELYFMS TGMPSATVAR GVVYKMIDPS RRAPPGKCQI bmy_02546T0/1-732 YYPHIISFAE DEAGELYFMS TGVPSATVAR GVVYKMIDPS RRAPPGKCQI ENSTTRP00000016098/1-561 YYPHIISFAE DEAGELYFMS TGVPSATVAR GVVYKVIDPS ---------- 601 650 ENSP00000330601/1-782 QPAQVKIRSR LIPFVPKEKF IPKTRSTPRP TARAPTRAPR RGRPTAAPPA ENSBTAP00000013614/1-786 QPSRVKVRSR LIHFVPKEKF IRRTESTPR- ----PTKAPR RSRPTAAPPA BACU007694/1-649 QPAQVKVRSR LIHFVPKEG- ---------- ---------- ---------- bmy_02546T0/1-732 QPAQVKVRSR LIHFVPKEEF IRRTESTLRP TAPAPTKAPR RSRPTAAPLA ENSTTRP00000016098/1-561 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000330601/1-782 PTPRPARPTQ QPGSRRGGGR RRGRLNSASR AFRDGEVRLV RPAGLSSGSG ENSBTAP00000013614/1-786 PTPRPPRPTS RPGRRRGSGR RRGRLGTADP EPSNGAVRLV RPAGLSPGRG BACU007694/1-649 --------DS QKGRRDGGGE RPSSRGTK-- ---QLPARVC RRAAEAPGI- bmy_02546T0/1-732 PTLRPSRPTP RPGRRRGGGR RRGRLGTKVP EPSNGAVRLV RPAGLSPGRG ENSTTRP00000016098/1-561 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000330601/1-782 RVEVFVGGRW GTVCDDSWNI SGAAVVCRQL GFAYAVRAVK RAEFGQGGSL ENSBTAP00000013614/1-786 RVEVFAGGRW GTVCDDAWDT KAAAVVCRQL GFLYAARAAK RAEFGEGRTL BACU007694/1-649 QLQVFTGGRW GTVCDDAWDT KGAAVVCRQL GFAYAVRAAK RAEFGEGHTL bmy_02546T0/1-732 RVEVFAGGRW GTVCDDAWDT KGAAVVCRQL GFAYAVRAAK RAEFGEGHTL ENSTTRP00000016098/1-561 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000330601/1-782 PILLDDVRCA GWERNLLECQ HNGVGTHNCE HDEDAGVVCS HQNPDL ENSBTAP00000013614/1-786 PILLDDVRCT GSERNLLECA HAGLGSHNCG HQEDAGVVCS REDPDL BACU007694/1-649 PILLDDVRCT GSERNLLECA HAGLGSHNCD HQEDAGVVCS REDPHL bmy_02546T0/1-732 PILLDDVRCT GSERNLLECA H--------- ----AGVVCS HEDPDL ENSTTRP00000016098/1-561 ---------- ---------- ---------- ---------- ------