KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 16:50:56 2014 Check: 00 ..
Name: ENSP00000268854/1-599 Len: 689 Check: 7413 Weight: 1.00
Name: ENSBTAP00000013622/1-596 Len: 689 Check: 4226 Weight: 1.00
Name: bmy_02876T0/1-649 Len: 689 Check: 5895 Weight: 1.00
Name: ENSTTRP00000008458/1-598 Len: 689 Check: 7575 Weight: 1.00
//
1 50
ENSP00000268854/1-599 MDVHDLFRRL GAGAKFDTRR FSADAARFQI GKRKYDFDSS EVLQGLDFFG
ENSBTAP00000013622/1-596 MDAHDLFRRL GVGAKFDLRR FSADAARFQI GKRKYDFDSS EVLQGLDFFG
bmy_02876T0/1-649 MDAHDLFRRL GAGAKFDVRR FSADAARFKI GKRKYDFDSS EVLQGLDFFG
ENSTTRP00000008458/1-598 MDAHDLFRRL GAGAKFDVRR FSADAARFKI GKRKYDFDSS EVLQGLDFFG
51 100
ENSP00000268854/1-599 NKKSVPGVCG ASQTHQKPQN GEKKEESLTE RKREQSKKKR KTMTSEIASQ
ENSBTAP00000013622/1-596 NKKPVPGDCG ALRTHQELPD EEKTEESQIE RKKQ--NRKK KKITSEITSE
bmy_02876T0/1-649 NKKSVP---- ---------- ---------- ---------- -----EITSQ
ENSTTRP00000008458/1-598 NKKSVPGESE SSRTHQELQD EEKNEESLTE RKREQNKKKR KKMTSEITSQ
101 150
ENSP00000268854/1-599 EEGATIQWMS SVEAKIEDKK VQRESKLTSG KLENLRKEKI NFLRNKHKIH
ENSBTAP00000013622/1-596 EEVSTIQWIS SVEAKIEDKN VKRKNKLTSG KLEQLRKEKL NFFRNKHKIH
bmy_02876T0/1-649 -EVSTIQWIS SVEAKIEDKK VKRENKLTSG KLEQLRKEKI NFFRNKHKIH
ENSTTRP00000008458/1-598 -EVSTIQWIS SVEAKIEDKK VKRENKLTSG KLEQLRKEKI NFFRNKHKIH
151 200
ENSP00000268854/1-599 VQGTDLPDPI ATFQQLDQEY KINSRLLQNI LDAGFQMPTP IQMQAIPVML
ENSBTAP00000013622/1-596 VQGTDLPDPI ATFQQLDQEY KINSRLLQNI LDAGFQTPTP IQMQAIPVML
bmy_02876T0/1-649 VQGTDLPDPI ATFQQLDQEF KISSRLLQNI LDAGFQIPTP IQMQAIPVML
ENSTTRP00000008458/1-598 VQGTDLPDPI ATFQQLDQEF KINSRLLQNI LDAGFQIPTP IQMQAIPVML
201 250
ENSP00000268854/1-599 HGRELLASAP TGSGKTLAFS IPILMQLKQP ANKGFRALII SPTRELASQI
ENSBTAP00000013622/1-596 HGRELLASAP TGSGKTLAFS IPILMHLKQP TNKGFRALII SPTRELASQI
bmy_02876T0/1-649 HGRELLASAP TGSGKTLAFS IPILMQLKQP TNKGFRALII SPTRELASQI
ENSTTRP00000008458/1-598 HGRELLASAP TGSGKTLAFS IPILMHLKQP TNKGFRALII SPTRELASQI
251 300
ENSP00000268854/1-599 HRELIKISEG TGFRIHMIHK AAVAAKKFGP KSSKKFDILV TTPNRLIYLL
ENSBTAP00000013622/1-596 HRELVKLSEG TGFRIHMIHK AAVAAKKFGP KSSKKFDILV TTPNRLIYLL
bmy_02876T0/1-649 HRELIKISEG TGFRIHMIHK AAVAAKKFGP KSSKKFDILV TTPNRLIYLL
ENSTTRP00000008458/1-598 HRELVKISEG TGFRIHMIHK AAVAAKKFGP KSSKKFDILV TTPNRLIYLL
301 350
ENSP00000268854/1-599 KQDPPGIDLA SVEWLVVDES DKLFEDGKTG FRDQLASIFL ACTSHKVRRA
ENSBTAP00000013622/1-596 KQDPPGIDLT SVEWLVVDES DKLFEDGKTG FRDQLASIFL ACTSHKVKRA
bmy_02876T0/1-649 KQDPPGIDLT SVEWLVVDES DKLFEDGKTG FRDQLATIFL ACTSHKVKRA
ENSTTRP00000008458/1-598 KQDPPGIDLT SVEWLVVDES DKLFEDGKTG FRDQLASIFL ACTSHKVKRA
351 400
ENSP00000268854/1-599 MFSATFAYDV EQWCKLNLDN VISVSIGA-- ---------- --------RN
ENSBTAP00000013622/1-596 MFSATFAYDV EQWCRLNLDS VITVSVGA-- ---------- --------RN
bmy_02876T0/1-649 MFSATFAYDV EQWCRLNLDN VITVSIGARI KGGKQKSALA NYKGCFLLRN
ENSTTRP00000008458/1-598 MFSATFAYDV EQWCRLNLDN IITVSIGA-- ---------- --------RN
401 450
ENSP00000268854/1-599 SAVETVEQEL LFVGSETGKL LAMRELVKKG FNPPVLVFVQ SIERAKELFH
ENSBTAP00000013622/1-596 SAVETVEQEL LFVGSETGKL LAMRELVKKG FNPPVLVFVQ SIERAKELFH
bmy_02876T0/1-649 SAVETVEQEL LFVGSETGKL LAMRELVKKG FNPPVLVFVQ SIERAKELFH
ENSTTRP00000008458/1-598 SAVETVEQEL LFVGSETGKL LAMRELVKKG FNPPVLVFVQ SIERAKELFH
451 500
ENSP00000268854/1-599 ELIYEGINVD VIHAERTQQ- ---------- --QRDNTVHS FRAGKIWVLI
ENSBTAP00000013622/1-596 ELIYEGINVD VIHADRTQQ- ---------- --QRDNTVHS FRAGKIWVLI
bmy_02876T0/1-649 ELIYEGINVD VIHADRTQQQ SGTKTFNVCS VNQRDNTVHS FRAGKIWVLI
ENSTTRP00000008458/1-598 ELIYEGINVD VIHADRTQQ- ---------- --QRDNTVHS FRAGKIWVLI
501 550
ENSP00000268854/1-599 CTALLARGID FKGVNLVINY DFPTSSVEYI HRIGRTGRAG NKGKAITFFT
ENSBTAP00000013622/1-596 CTALLARGID FKGVNLVINY DFPTSSVEYI HRIGRTGRAG HKGKAVTFFT
bmy_02876T0/1-649 CTALLARGID FKGVNLVINY DFPTSSVEYI HRIGRTGRAG HKGQAVTFFT
ENSTTRP00000008458/1-598 CTALLARGID FKGVNLVINY DFPTSSVEYI HRIGRTGRAG HKGKAVTFFT
551 600
ENSP00000268854/1-599 EDDKPLLR-- ---------- ---------- SVANVIQQAG CPVPEYIKGF
ENSBTAP00000013622/1-596 EDDKPLLR-- ---------- ---------- SVANVIQQAG CPVPEYIKGF
bmy_02876T0/1-649 EDDKPLLRRG FMYINISLTR YKFTFMGTFF SVANVIQQAG CPVPEYIKGF
ENSTTRP00000008458/1-598 EDDKPLLR-- ---------- ---------- SVANVIQQAG CPVPEYIKGF
601 650
ENSP00000268854/1-599 QKLLSKQKKK MIKKPLERES ISTTPKCFLE KAKDKQ---- ----------
ENSBTAP00000013622/1-596 QKLLSKQKKK MIKKPLERES ISTTPKYFLE KAKDKR---- ----------
bmy_02876T0/1-649 QKLLSKQKKK MIKKPLERES ISTTPKYFLE KAKDKRFMFP VAGGIRPPQG
ENSTTRP00000008458/1-598 QKLLSKQKKK MIKKPLERES ISTTPKYFLE KAKDKR---- ----------
651 700
ENSP00000268854/1-599 ---------- ---------K KVTGQNSKKK VA--LEDKS
ENSBTAP00000013622/1-596 ---------- ---------K KVTGQN-KKK VA--PEDKS
bmy_02876T0/1-649 LMPMQQQGFP MVSVMQPNMQ GMIGMNYSSQ MSQGPIAMQ
ENSTTRP00000008458/1-598 ---------- ---------K KVTGQNSKKK VT--PEDKS