KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:50:56 2014 Check: 00 .. Name: ENSP00000268854/1-599 Len: 689 Check: 7413 Weight: 1.00 Name: ENSBTAP00000013622/1-596 Len: 689 Check: 4226 Weight: 1.00 Name: bmy_02876T0/1-649 Len: 689 Check: 5895 Weight: 1.00 Name: ENSTTRP00000008458/1-598 Len: 689 Check: 7575 Weight: 1.00 // 1 50 ENSP00000268854/1-599 MDVHDLFRRL GAGAKFDTRR FSADAARFQI GKRKYDFDSS EVLQGLDFFG ENSBTAP00000013622/1-596 MDAHDLFRRL GVGAKFDLRR FSADAARFQI GKRKYDFDSS EVLQGLDFFG bmy_02876T0/1-649 MDAHDLFRRL GAGAKFDVRR FSADAARFKI GKRKYDFDSS EVLQGLDFFG ENSTTRP00000008458/1-598 MDAHDLFRRL GAGAKFDVRR FSADAARFKI GKRKYDFDSS EVLQGLDFFG 51 100 ENSP00000268854/1-599 NKKSVPGVCG ASQTHQKPQN GEKKEESLTE RKREQSKKKR KTMTSEIASQ ENSBTAP00000013622/1-596 NKKPVPGDCG ALRTHQELPD EEKTEESQIE RKKQ--NRKK KKITSEITSE bmy_02876T0/1-649 NKKSVP---- ---------- ---------- ---------- -----EITSQ ENSTTRP00000008458/1-598 NKKSVPGESE SSRTHQELQD EEKNEESLTE RKREQNKKKR KKMTSEITSQ 101 150 ENSP00000268854/1-599 EEGATIQWMS SVEAKIEDKK VQRESKLTSG KLENLRKEKI NFLRNKHKIH ENSBTAP00000013622/1-596 EEVSTIQWIS SVEAKIEDKN VKRKNKLTSG KLEQLRKEKL NFFRNKHKIH bmy_02876T0/1-649 -EVSTIQWIS SVEAKIEDKK VKRENKLTSG KLEQLRKEKI NFFRNKHKIH ENSTTRP00000008458/1-598 -EVSTIQWIS SVEAKIEDKK VKRENKLTSG KLEQLRKEKI NFFRNKHKIH 151 200 ENSP00000268854/1-599 VQGTDLPDPI ATFQQLDQEY KINSRLLQNI LDAGFQMPTP IQMQAIPVML ENSBTAP00000013622/1-596 VQGTDLPDPI ATFQQLDQEY KINSRLLQNI LDAGFQTPTP IQMQAIPVML bmy_02876T0/1-649 VQGTDLPDPI ATFQQLDQEF KISSRLLQNI LDAGFQIPTP IQMQAIPVML ENSTTRP00000008458/1-598 VQGTDLPDPI ATFQQLDQEF KINSRLLQNI LDAGFQIPTP IQMQAIPVML 201 250 ENSP00000268854/1-599 HGRELLASAP TGSGKTLAFS IPILMQLKQP ANKGFRALII SPTRELASQI ENSBTAP00000013622/1-596 HGRELLASAP TGSGKTLAFS IPILMHLKQP TNKGFRALII SPTRELASQI bmy_02876T0/1-649 HGRELLASAP TGSGKTLAFS IPILMQLKQP TNKGFRALII SPTRELASQI ENSTTRP00000008458/1-598 HGRELLASAP TGSGKTLAFS IPILMHLKQP TNKGFRALII SPTRELASQI 251 300 ENSP00000268854/1-599 HRELIKISEG TGFRIHMIHK AAVAAKKFGP KSSKKFDILV TTPNRLIYLL ENSBTAP00000013622/1-596 HRELVKLSEG TGFRIHMIHK AAVAAKKFGP KSSKKFDILV TTPNRLIYLL bmy_02876T0/1-649 HRELIKISEG TGFRIHMIHK AAVAAKKFGP KSSKKFDILV TTPNRLIYLL ENSTTRP00000008458/1-598 HRELVKISEG TGFRIHMIHK AAVAAKKFGP KSSKKFDILV TTPNRLIYLL 301 350 ENSP00000268854/1-599 KQDPPGIDLA SVEWLVVDES DKLFEDGKTG FRDQLASIFL ACTSHKVRRA ENSBTAP00000013622/1-596 KQDPPGIDLT SVEWLVVDES DKLFEDGKTG FRDQLASIFL ACTSHKVKRA bmy_02876T0/1-649 KQDPPGIDLT SVEWLVVDES DKLFEDGKTG FRDQLATIFL ACTSHKVKRA ENSTTRP00000008458/1-598 KQDPPGIDLT SVEWLVVDES DKLFEDGKTG FRDQLASIFL ACTSHKVKRA 351 400 ENSP00000268854/1-599 MFSATFAYDV EQWCKLNLDN VISVSIGA-- ---------- --------RN ENSBTAP00000013622/1-596 MFSATFAYDV EQWCRLNLDS VITVSVGA-- ---------- --------RN bmy_02876T0/1-649 MFSATFAYDV EQWCRLNLDN VITVSIGARI KGGKQKSALA NYKGCFLLRN ENSTTRP00000008458/1-598 MFSATFAYDV EQWCRLNLDN IITVSIGA-- ---------- --------RN 401 450 ENSP00000268854/1-599 SAVETVEQEL LFVGSETGKL LAMRELVKKG FNPPVLVFVQ SIERAKELFH ENSBTAP00000013622/1-596 SAVETVEQEL LFVGSETGKL LAMRELVKKG FNPPVLVFVQ SIERAKELFH bmy_02876T0/1-649 SAVETVEQEL LFVGSETGKL LAMRELVKKG FNPPVLVFVQ SIERAKELFH ENSTTRP00000008458/1-598 SAVETVEQEL LFVGSETGKL LAMRELVKKG FNPPVLVFVQ SIERAKELFH 451 500 ENSP00000268854/1-599 ELIYEGINVD VIHAERTQQ- ---------- --QRDNTVHS FRAGKIWVLI ENSBTAP00000013622/1-596 ELIYEGINVD VIHADRTQQ- ---------- --QRDNTVHS FRAGKIWVLI bmy_02876T0/1-649 ELIYEGINVD VIHADRTQQQ SGTKTFNVCS VNQRDNTVHS FRAGKIWVLI ENSTTRP00000008458/1-598 ELIYEGINVD VIHADRTQQ- ---------- --QRDNTVHS FRAGKIWVLI 501 550 ENSP00000268854/1-599 CTALLARGID FKGVNLVINY DFPTSSVEYI HRIGRTGRAG NKGKAITFFT ENSBTAP00000013622/1-596 CTALLARGID FKGVNLVINY DFPTSSVEYI HRIGRTGRAG HKGKAVTFFT bmy_02876T0/1-649 CTALLARGID FKGVNLVINY DFPTSSVEYI HRIGRTGRAG HKGQAVTFFT ENSTTRP00000008458/1-598 CTALLARGID FKGVNLVINY DFPTSSVEYI HRIGRTGRAG HKGKAVTFFT 551 600 ENSP00000268854/1-599 EDDKPLLR-- ---------- ---------- SVANVIQQAG CPVPEYIKGF ENSBTAP00000013622/1-596 EDDKPLLR-- ---------- ---------- SVANVIQQAG CPVPEYIKGF bmy_02876T0/1-649 EDDKPLLRRG FMYINISLTR YKFTFMGTFF SVANVIQQAG CPVPEYIKGF ENSTTRP00000008458/1-598 EDDKPLLR-- ---------- ---------- SVANVIQQAG CPVPEYIKGF 601 650 ENSP00000268854/1-599 QKLLSKQKKK MIKKPLERES ISTTPKCFLE KAKDKQ---- ---------- ENSBTAP00000013622/1-596 QKLLSKQKKK MIKKPLERES ISTTPKYFLE KAKDKR---- ---------- bmy_02876T0/1-649 QKLLSKQKKK MIKKPLERES ISTTPKYFLE KAKDKRFMFP VAGGIRPPQG ENSTTRP00000008458/1-598 QKLLSKQKKK MIKKPLERES ISTTPKYFLE KAKDKR---- ---------- 651 700 ENSP00000268854/1-599 ---------- ---------K KVTGQNSKKK VA--LEDKS ENSBTAP00000013622/1-596 ---------- ---------K KVTGQN-KKK VA--PEDKS bmy_02876T0/1-649 LMPMQQQGFP MVSVMQPNMQ GMIGMNYSSQ MSQGPIAMQ ENSTTRP00000008458/1-598 ---------- ---------K KVTGQNSKKK VT--PEDKS